Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Forward (+)

2137651 .. 2140870

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G044500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTATATAGCTTCCATGCGAAAGTCATTCAAGGACTCTCTGAAAGTGCTCGAAGCTGATATTCAGCATGCAAATACACTGGCCTCGGATTATCCAAGGGAGTATGATGGTGCTTGTCTTCAGATGAGAATGTCATACAGTCCAGCTGCTCACCTCTTCCTTTTTCTGGTGCAATGGACTGACTGCAACCTCGCAGGAGCCCTTGGGCTGTTAAGAATTTTAATTTACAAGGTTTATGTGGATGGCTCAACAACCATCATGTCTACCAAGGAAAGGAAAGCAAGCATCAGAGAGTTCTATGCTGTTATTTATCCCTCCTTGTTGCAACTTCAGAGAGGTGTCACCGACAGTGAAGATAAAAAGCAGAAGGCGGTATGCGTGGAAAGGTATCGAAAAAGAGATGATGAGGAAAATCGACAGTGTTCTGATATAGACATTGAAAGAGAGGAGGAATGCGGTATATGCATGGAGACAAATAGTAAAATTGTATTGCCTAACTGCAACCATGCTATGTGCTTGAAATGTTACCGTGATTGGCGAACAAGATCTCAGTCATGCCCATTCTGCCGTGACAATCTTAAGAGAGTGAACTCGGGTGATCTCTGGGTATACACTGACTGCAGGGACATAGTGGACATGGAAACAGTGATGAGGGAGAACCTTAGGAGGCTTTTCATGTATATAGATAAGTTGCCTTTAGTTACACCGGATAACCCCTTTGACCCTTATGATTCCCACCTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prok-RING_4 zf-C3HC4_3 zf-RING_2

Protein Analysis

249

Amino Acids

29.06

Weight (kDa)

6.45

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	263, 609
AciI	CCGC	2 cut(s)	371, 456
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	2 cut(s)	104, 314
AfiI	CCNNNNNNNGG	3 cut(s)	166, 273, 741
AflII	CTTAAG	1 cut(s)	578
AgsI	TTSAA	3 cut(s)	31, 440, 520
AluBI	AGCT	3 cut(s)	11, 56, 146
AluI	AGCT	3 cut(s)	11, 56, 146
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	592
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	143, 334, 608
AvaI	CYCGRG	1 cut(s)	592
AxyI	CCTNAGG	2 cut(s)	662, 740
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	3 cut(s)	101, 236, 263
BceAI	ACGGC	1 cut(s)	552
BcoDI	GTCTC	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	619
BfrI	CTTAAG	1 cut(s)	578
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	592
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	84, 95, 202, 267
BsaWI	WCCGGW	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 273, 741
Bse1I	ACTGG	1 cut(s)	84
Bse21I	CCTNAGG	2 cut(s)	662, 740
Bse3DI	GCAATG	1 cut(s)	179
BseDI	CCNNGG	4 cut(s)	84, 95, 202, 267
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	3 cut(s)	166, 273, 741
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	3 cut(s)	166, 273, 741
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	638
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	592
Bsp1286I	GDGCHC	2 cut(s)	51, 202
Bsp143I	GATC	2 cut(s)	545, 598
BspACI	CCGC	2 cut(s)	371, 456
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	199
BspMAI	CTGCAG	1 cut(s)	623
BspTI	CTTAAG	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	4 cut(s)	84, 95, 202, 267
BssMI	GATC	2 cut(s)	545, 598
BssNAI	GTATAC	1 cut(s)	610
BssT1I	CCWWGG	3 cut(s)	95, 202, 267
Bst1107I	GTATAC	1 cut(s)	610
Bst4CI	ACNGT	5 cut(s)	140, 350, 420, 530, 646
Bst6I	CTCTTC	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	69, 283
BstDEI	CTNAG	3 cut(s)	549, 662, 740
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	2 cut(s)	548, 601
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	545, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	462, 564
BstNSI	RCATGY	1 cut(s)	71
BstSFI	CTRYAG	1 cut(s)	619
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	545
BstZ17I	GTATAC	1 cut(s)	610
Bsu36I	CCTNAGG	2 cut(s)	662, 740
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	247
BtsIMutI	CAGTG	5 cut(s)	77, 355, 425, 612, 651
Cac8I	GCNNGC	2 cut(s)	69, 283
CviAII	CATG	8 cut(s)	16, 68, 259, 466, 506, 555, 637, 676
CviJI	RGCY	8 cut(s)	11, 56, 83, 146, 200, 208, 246, 670
CviKI_1	RGCY	8 cut(s)	11, 56, 83, 146, 200, 208, 246, 670
DdeI	CTNAG	3 cut(s)	549, 662, 740
DpnI	GATC	2 cut(s)	547, 600
DpnII	GATC	2 cut(s)	545, 598
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco130I	CCWWGG	3 cut(s)	95, 202, 267
Eco24I	GRGCYC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	104, 314
Eco81I	CCTNAGG	2 cut(s)	662, 740
Eco88I	CYCGRG	1 cut(s)	592
EcoT14I	CCWWGG	3 cut(s)	95, 202, 267
EcoT22I	ATGCAT	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	3 cut(s)	95, 202, 267
FaeI	CATG	8 cut(s)	19, 71, 262, 469, 509, 558, 640, 679
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	8 cut(s)	15, 67, 258, 465, 505, 554, 636, 675
FblI	GTMKAC	2 cut(s)	263, 609
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	707
Hin1II	CATG	8 cut(s)	19, 71, 262, 469, 509, 558, 640, 679
HinfI	GANTC	2 cut(s)	35, 731
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	3 cut(s)	143, 334, 608
Hpy166II	GTNNAC	4 cut(s)	264, 589, 610, 634
Hpy188I	TCNGA	6 cut(s)	42, 88, 123, 290, 333, 427
Hpy8I	GTNNAC	4 cut(s)	264, 589, 610, 634
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	5 cut(s)	140, 350, 420, 530, 646
HpyCH4V	TGCA	7 cut(s)	71, 172, 186, 325, 465, 501, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	462, 564
HpyF3I	CTNAG	3 cut(s)	549, 662, 740
Hsp92II	CATG	8 cut(s)	19, 71, 262, 469, 509, 558, 640, 679
Kzo9I	GATC	2 cut(s)	545, 598
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	7 cut(s)	65, 152, 156, 180, 589, 607, 720
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	294
MaeIII	GTNAC	4 cut(s)	340, 524, 569, 700
MalI	GATC	2 cut(s)	547, 600
MboI	GATC	2 cut(s)	545, 598
MboII	GAAGA	3 cut(s)	110, 148, 365
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	2 cut(s)	51, 202
MluCI	AATT	3 cut(s)	216, 222, 483
MlyI	GAGTC	1 cut(s)	29
Mph1103I	ATGCAT	1 cut(s)	467
MseI	TTAA	3 cut(s)	212, 221, 579
MspA1I	CMGCKG	1 cut(s)	146
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	1 cut(s)	707
Mva1269I	GAATGC	1 cut(s)	458
MwoI	GCNNNNNNNGC	2 cut(s)	462, 564
NdeII	GATC	2 cut(s)	545, 598
NlaIII	CATG	8 cut(s)	19, 71, 262, 469, 509, 558, 640, 679
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	2 cut(s)	340, 569
NsiI	ATGCAT	1 cut(s)	467
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	731
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	212, 221, 579
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	545, 598
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	51, 202
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	619
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	3 cut(s)	216, 222, 483
SsiI	CCGC	2 cut(s)	371, 456
StyI	CCWWGG	3 cut(s)	95, 202, 267
TaaI	ACNGT	5 cut(s)	140, 350, 420, 530, 646
TaqI	TCGA	3 cut(s)	51, 391, 415
TasI	AATT	3 cut(s)	216, 222, 483
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	3 cut(s)	212, 221, 579
Tru9I	TTAA	3 cut(s)	212, 221, 579
TscAI	CASTG	5 cut(s)	84, 355, 425, 619, 651
TseFI	GTSAC	2 cut(s)	340, 569
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	2 cut(s)	340, 569
TspDTI	ATGAA	1 cut(s)	664
TspRI	CASTG	5 cut(s)	84, 355, 425, 619, 651
Vha464I	CTTAAG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	216
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	2 cut(s)	263, 609
Zsp2I	ATGCAT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.