Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Reverse (-)

18236607 .. 18238819

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCGAAAGTCCTTCAAGGATTCTCTCAAGGCGCTCCAAGCTGATATCCAGTTCGCCAACACTCTGGCTTCTGGTTATCCGAGGGAAAATGATGGGGCCTGCTTCCAAATGAGATTATCCTACAGCCCGGCTGCGCAATTCTTTTGGTTTCTCATTCAGTGGACCGATTGTCACCTTGCTGGATCCATGGGATTGCTTAGAATTCTAATATACAAGGTGTACGAGGATGGGAAGACCACCATGTCTATTCATGAAAGAAAAGCTAGTCTAAAAGAGTTCTACGGCGTGATATTTCCTTCGTTATTGCAACTTCAGAGGGGATTGACTGAGGTAGAAGATAGGAAACAAAAAGAAATCCTTTCCACCAAGTACAAGAGAAAAGACGAGGCAGTCAAAGGAAAGCTCTCTGAAATTGATTTAGAGCGAGAACAAGAATGTGGTATTTGCATGGAGATGAACAGCAAGGTTGTATTGCCCAACTGCAGTCATTCTATGTGCATGAAGTGCTATCGAAACTGGCGTACACGGTCTCAATCATGCCCCTTCTGCCGGGATAGTCTGAAACGAGTCAACTCATGTGATCTTTGGATCTACACCAGCAACAATGAGATTGTTGACCTGTCTGCAATCTCTAGGGAGAATTCGAAGAGACTTTTCATGTACATTGATAAGCTTCCTCTCATTGCGCCAAATCCGGCGTATGTTTCTTATGATCTTCGTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

242

Amino Acids

28.09

Weight (kDa)

9.02

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	241, 389
Acc16I	TGCGCA	1 cut(s)	135
AclWI	GGATC	3 cut(s)	177, 190, 596
AcsI	RAATTY	2 cut(s)	201, 640
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	4 cut(s)	221, 371, 523, 662
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	16
AhdI	GACNNNNNGTC	1 cut(s)	168
AluBI	AGCT	4 cut(s)	41, 263, 403, 673
AluI	AGCT	4 cut(s)	41, 263, 403, 673
Alw26I	GTCTC	2 cut(s)	534, 643
AlwI	GGATC	3 cut(s)	177, 190, 596
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	201, 640
AspLEI	GCGC	3 cut(s)	34, 136, 688
AspS9I	GGNCC	2 cut(s)	96, 162
AsuC2I	CCSGG	2 cut(s)	128, 551
AsuHPI	GGTGA	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	644
AvaII	GGWCC	1 cut(s)	162
BamHI	GGATCC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	86, 221
BceAI	ACGGC	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	128, 551
BcoDI	GTCTC	2 cut(s)	534, 643
BfaI	CTAG	2 cut(s)	264, 633
BfmI	CTRYAG	2 cut(s)	121, 481
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	2 cut(s)	128, 551
Bme18I	GGWCC	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	96, 162
BmiI	GGNNCC	2 cut(s)	97, 184
BmrFI	CCNGG	2 cut(s)	128, 551
BpiI	GAAGAC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	644
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	2 cut(s)	128, 551
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	80, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	2 cut(s)	49, 521
Bse3DI	GCAATG	1 cut(s)	681
BseDI	CCNNGG	2 cut(s)	80, 186
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	49, 521
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	98
BsiSI	CCGG	3 cut(s)	128, 550, 695
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	2 cut(s)	534, 643
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	534
Bsp119I	TTCGAA	1 cut(s)	644
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	4 cut(s)	182, 580, 588, 712
Bsp19I	CCATGG	1 cut(s)	186
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	97, 184
BspMAI	CTGCAG	1 cut(s)	485
BspPI	GGATC	3 cut(s)	177, 190, 596
BspT104I	TTCGAA	1 cut(s)	644
BspTNI	GGTCTC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	681
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	2 cut(s)	49, 521
BssECI	CCNNGG	2 cut(s)	80, 186
BssMI	GATC	4 cut(s)	182, 580, 588, 712
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	1 cut(s)	641
BstAPI	GCANNNNNTGC	1 cut(s)	504
BstAUI	TGTACA	1 cut(s)	660
BstBI	TTCGAA	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	197, 327
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	3 cut(s)	34, 136, 688
BstKTI	GATC	4 cut(s)	185, 583, 591, 715
BstMAI	GTCTC	2 cut(s)	534, 643
BstMBI	GATC	4 cut(s)	182, 580, 588, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 504, 546
BstSCI	CCNGG	2 cut(s)	126, 549
BstSFI	CTRYAG	2 cut(s)	121, 481
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	182, 588
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	2 cut(s)	182, 588
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	3 cut(s)	34, 136, 688
Cfr13I	GGNCC	2 cut(s)	96, 162
Csp6I	GTAC	4 cut(s)	220, 370, 522, 661
CviAII	CATG	8 cut(s)	187, 241, 251, 448, 499, 537, 576, 658
CviJI	RGCY	8 cut(s)	41, 68, 98, 126, 131, 263, 403, 673
CviKI_1	RGCY	8 cut(s)	41, 68, 98, 126, 131, 263, 403, 673
CviQI	GTAC	4 cut(s)	220, 370, 522, 661
DdeI	CTNAG	2 cut(s)	197, 327
DpnI	GATC	4 cut(s)	184, 582, 590, 714
DpnII	GATC	4 cut(s)	182, 580, 588, 712
DrdI	GACNNNNNNGTC	2 cut(s)	241, 389
DriI	GACNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	2 cut(s)	241, 389
Eam1104I	CTCTTC	1 cut(s)	641
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	96
EcoRI	GAATTC	2 cut(s)	201, 640
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	8 cut(s)	190, 244, 254, 451, 502, 540, 579, 661
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	8 cut(s)	186, 240, 250, 447, 498, 536, 575, 657
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	264, 633
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	3 cut(s)	33, 135, 687
GluI	GCNGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	3 cut(s)	128, 550, 695
HhaI	GCGC	3 cut(s)	34, 136, 688
Hin1II	CATG	8 cut(s)	190, 244, 254, 451, 502, 540, 579, 661
Hin6I	GCGC	3 cut(s)	32, 134, 686
HinP1I	GCGC	3 cut(s)	32, 134, 686
HincII	GTYRAC	2 cut(s)	571, 616
HindII	GTYRAC	2 cut(s)	571, 616
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	2 cut(s)	20, 567
HpaII	CCGG	3 cut(s)	128, 550, 695
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	5 cut(s)	162, 220, 524, 571, 616
Hpy188I	TCNGA	4 cut(s)	81, 315, 409, 561
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	5 cut(s)	162, 220, 524, 571, 616
Hpy99I	CGWCG	1 cut(s)	723
HpyAV	CCTTC	3 cut(s)	22, 306, 553
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4V	TGCA	5 cut(s)	307, 447, 483, 498, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 504, 546
HpyF3I	CTNAG	2 cut(s)	197, 327
Hsp92II	CATG	8 cut(s)	190, 244, 254, 451, 502, 540, 579, 661
HspAI	GCGC	3 cut(s)	32, 134, 686
Kzo9I	GATC	4 cut(s)	182, 580, 588, 712
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	264, 633
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	4 cut(s)	184, 582, 590, 714
MboI	GATC	4 cut(s)	182, 580, 588, 712
MboII	GAAGA	4 cut(s)	244, 347, 658, 707
MflI	RGATCY	2 cut(s)	182, 588
MluCI	AATT	4 cut(s)	137, 201, 411, 640
MlyI	GAGTC	1 cut(s)	576
MnlI	CCTC	6 cut(s)	75, 217, 309, 322, 379, 687
MslI	CAYNNNNRTG	1 cut(s)	452
MspI	CCGG	3 cut(s)	128, 550, 695
MspR9I	CCNGG	2 cut(s)	128, 551
MwoI	GCNNNNNNNGC	3 cut(s)	38, 504, 546
NciI	CCSGG	2 cut(s)	128, 551
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	182, 580, 588, 712
NlaIII	CATG	8 cut(s)	190, 244, 254, 451, 502, 540, 579, 661
NlaIV	GGNNCC	2 cut(s)	97, 184
NmuCI	GTSAC	1 cut(s)	170
NsbI	TGCGCA	1 cut(s)	135
NspV	TTCGAA	1 cut(s)	644
PagI	TCATGA	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
PspN4I	GGNNCC	2 cut(s)	97, 184
PspPI	GGNCC	2 cut(s)	96, 162
PstI	CTGCAG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	182, 588
RsaI	GTAC	4 cut(s)	221, 371, 523, 662
RsaNI	GTAC	4 cut(s)	220, 370, 522, 661
RseI	CAYNNNNRTG	1 cut(s)	452
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	4 cut(s)	182, 580, 588, 712
Sau96I	GGNCC	2 cut(s)	96, 162
SchI	GAGTC	1 cut(s)	576
ScrFI	CCNGG	2 cut(s)	128, 551
SetI	ASST	9 cut(s)	43, 177, 219, 265, 333, 405, 468, 621, 675
SfcI	CTRYAG	2 cut(s)	121, 481
SfuI	TTCGAA	1 cut(s)	644
SinI	GGWCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	137, 201, 411, 640
SspMI	CTAG	2 cut(s)	264, 633
StyD4I	CCNGG	2 cut(s)	126, 549
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	528
TaqI	TCGA	3 cut(s)	511, 644, 721
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	4 cut(s)	137, 201, 411, 640
TatI	WGTACW	2 cut(s)	369, 660
TfiI	GAWTC	1 cut(s)	20
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	5 cut(s)	239, 267, 470, 515, 646
TspRI	CASTG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	2 cut(s)	201, 640
XspI	CTAG	2 cut(s)	264, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.