Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Reverse (-)

24645349 .. 24647888

Gene Structure 2540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1165500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTTAGAGTTTTTCATGGGAGGGATGAGAAAAGAGTAAAAACCATCAGGAAAAGAAAAATGCGAAAGTCCTTCAAGGATTCTCTCAAGGCGCTCCAAGCTGACATCCAGTTCGCCAACACTCTGGCTTCTGGTTATCCGAGGGAAAATGACGGGGCCTGCTTCCAAATGAGATTATCCTACAGCCCGGCCGCGCAATTCTTTTGGTTTCTCATTCAGTGGACTGATTGTCACCTTGCTGGATCCATGGGATTGCTTAGAATTCTAATATACAAGGTGTACGAGGATGGGAAGACCACCATGTCTATTCATGAAAGAAAAGCTAGTCTAAAAGAGTTCTACAGCGTGATATTTCCTTCGTTATTGCAACTTCAGAGGGGATTGACTGAGGTAGAAGATAGGAAACAAAACGAAATCCTTTCCACCAAGTACAAGAGAAAAGACGAGGCGGTCAAAGGAAAGCTCTCCGAAATTGATTTAGAGCGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAGCAAGGTTGTATTGCCCAATTGCAGTCATTGTATGTGTATGAAGTGCTATCGAAACTGGCGTACACTGTCTCAATCATGCCCCTTCTGCCGTGACAGTCTGAAACGAGTCAACTCATGCGATCTTTGGATCTACACCAGCAACAATGAGATTGTTGACCTGTCTACAATCTCTAGGGAGAATTCAAAGAGACTTTTTATGTACATTGATAAGCTTCCTCTCATCGCGCCAAATCCTAAGTTTGTTTCGTATGATCTTCGTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

262

Amino Acids

30.72

Weight (kDa)

9.31

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	163 - 209	4.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	165 - 204	1.2e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	301, 449
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	2 cut(s)	194, 746
AciI	CCGC	2 cut(s)	192, 449
AclWI	GGATC	3 cut(s)	237, 250, 656
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	261, 700
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	4 cut(s)	281, 431, 583, 722
AgsI	TTSAA	2 cut(s)	76, 705
AhdI	GACNNNNNGTC	1 cut(s)	228
AluBI	AGCT	4 cut(s)	101, 323, 463, 733
AluI	AGCT	4 cut(s)	101, 323, 463, 733
Alw26I	GTCTC	2 cut(s)	594, 703
AlwI	GGATC	3 cut(s)	237, 250, 656
AoxI	GGCC	2 cut(s)	156, 189
ApoI	RAATTY	2 cut(s)	261, 700
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	3 cut(s)	94, 196, 748
AspS9I	GGNCC	1 cut(s)	156
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	299
BccI	CCATC	2 cut(s)	53, 281
BceAI	ACGGC	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	594, 703
BfaI	CTAG	2 cut(s)	324, 693
BfmI	CTRYAG	2 cut(s)	181, 340
BfoI	RGCGCY	1 cut(s)	95
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	188
BmeRI	GACNNNNNGTC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	2 cut(s)	157, 244
BmrFI	CCNGG	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	140, 246
Bse1I	ACTGG	2 cut(s)	109, 581
BseDI	CCNNGG	2 cut(s)	140, 246
BseGI	GGATG	3 cut(s)	31, 105, 292
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	109, 581
BseX3I	CGGCCG	1 cut(s)	189
Bsh1236I	CGCG	2 cut(s)	194, 746
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	158, 191
BsiEI	CGRYCG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	188
BsmAI	GTCTC	2 cut(s)	594, 703
BsnI	GGCC	2 cut(s)	158, 191
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	4 cut(s)	242, 640, 648, 772
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	2 cut(s)	192, 449
BspANI	GGCC	2 cut(s)	158, 191
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	2 cut(s)	194, 746
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	2 cut(s)	157, 244
BspPI	GGATC	3 cut(s)	237, 250, 656
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	109, 581
BssECI	CCNNGG	2 cut(s)	140, 246
BssMI	GATC	4 cut(s)	242, 640, 648, 772
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	588, 617
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	257, 387, 756
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	31, 105, 292
BstFNI	CGCG	2 cut(s)	194, 746
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	3 cut(s)	94, 196, 748
BstKTI	GATC	4 cut(s)	245, 643, 651, 775
BstMAI	GTCTC	2 cut(s)	594, 703
BstMBI	GATC	4 cut(s)	242, 640, 648, 772
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 606
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	2 cut(s)	181, 340
BstUI	CGCG	2 cut(s)	194, 746
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	2 cut(s)	242, 648
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	2 cut(s)	242, 648
BstZI	CGGCCG	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	158, 191
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	727
BtsCI	GGATG	3 cut(s)	31, 105, 292
BtsIMutI	CAGTG	2 cut(s)	224, 584
Cac8I	GCNNGC	1 cut(s)	160
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	3 cut(s)	94, 196, 748
Cfr13I	GGNCC	1 cut(s)	156
Csp6I	GTAC	4 cut(s)	280, 430, 582, 721
CviAII	CATG	7 cut(s)	17, 247, 301, 311, 508, 597, 636
CviJI	RGCY	8 cut(s)	101, 128, 158, 186, 191, 323, 463, 733
CviKI_1	RGCY	8 cut(s)	101, 128, 158, 186, 191, 323, 463, 733
CviQI	GTAC	4 cut(s)	280, 430, 582, 721
DdeI	CTNAG	3 cut(s)	257, 387, 756
DpnI	GATC	4 cut(s)	244, 642, 650, 774
DpnII	GATC	4 cut(s)	242, 640, 648, 772
DrdI	GACNNNNNNGTC	2 cut(s)	301, 449
DriI	GACNNNNNGTC	1 cut(s)	228
DseDI	GACNNNNNNGTC	2 cut(s)	301, 449
EaeI	YGGCCR	1 cut(s)	189
EagI	CGGCCG	1 cut(s)	189
Eam1105I	GACNNNNNGTC	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRI	GAATTC	2 cut(s)	261, 700
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	7 cut(s)	20, 250, 304, 314, 511, 600, 639
FatI	CATG	7 cut(s)	16, 246, 300, 310, 507, 596, 635
FblI	GTMKAC	1 cut(s)	683
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	3 cut(s)	38, 92, 299
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	324, 693
GlaI	GCGC	3 cut(s)	93, 195, 747
GluI	GCNGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	158, 191
HapII	CCGG	1 cut(s)	188
HhaI	GCGC	3 cut(s)	94, 196, 748
Hin1II	CATG	7 cut(s)	20, 250, 304, 314, 511, 600, 639
Hin6I	GCGC	3 cut(s)	92, 194, 746
HinP1I	GCGC	3 cut(s)	92, 194, 746
HincII	GTYRAC	2 cut(s)	631, 676
HindII	GTYRAC	2 cut(s)	631, 676
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	2 cut(s)	80, 627
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	6 cut(s)	222, 280, 584, 631, 676, 684
Hpy188I	TCNGA	4 cut(s)	141, 375, 469, 621
Hpy188III	TCNNGA	2 cut(s)	49, 311
Hpy8I	GTNNAC	6 cut(s)	222, 280, 584, 631, 676, 684
Hpy99I	CGWCG	1 cut(s)	783
HpyAV	CCTTC	3 cut(s)	82, 366, 613
HpyCH4III	ACNGT	2 cut(s)	588, 617
HpyCH4V	TGCA	3 cut(s)	367, 507, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 606
HpyF3I	CTNAG	3 cut(s)	257, 387, 756
Hsp92II	CATG	7 cut(s)	20, 250, 304, 314, 511, 600, 639
HspAI	GCGC	3 cut(s)	92, 194, 746
Kzo9I	GATC	4 cut(s)	242, 640, 648, 772
LmnI	GCTCC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	324, 693
MaeIII	GTNAC	2 cut(s)	230, 611
MalI	GATC	4 cut(s)	244, 642, 650, 774
MboI	GATC	4 cut(s)	242, 640, 648, 772
MboII	GAAGA	5 cut(s)	304, 407, 500, 503, 767
MfeI	CAATTG	1 cut(s)	538
MflI	RGATCY	2 cut(s)	242, 648
MluCI	AATT	5 cut(s)	197, 261, 471, 538, 700
MlyI	GAGTC	1 cut(s)	636
MnlI	CCTC	7 cut(s)	15, 135, 277, 369, 382, 439, 747
MslI	CAYNNNNRTG	1 cut(s)	512
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	538
MvnI	CGCG	2 cut(s)	194, 746
MwoI	GCNNNNNNNGC	2 cut(s)	98, 606
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	4 cut(s)	242, 640, 648, 772
NlaIII	CATG	7 cut(s)	20, 250, 304, 314, 511, 600, 639
NlaIV	GGNNCC	2 cut(s)	157, 244
NmuCI	GTSAC	2 cut(s)	230, 611
PagI	TCATGA	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PspN4I	GGNNCC	2 cut(s)	157, 244
PspPI	GGNCC	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	242, 648
RsaI	GTAC	4 cut(s)	281, 431, 583, 722
RsaNI	GTAC	4 cut(s)	280, 430, 582, 721
RseI	CAYNNNNRTG	1 cut(s)	512
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	4 cut(s)	242, 640, 648, 772
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	636
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	9 cut(s)	103, 237, 279, 325, 393, 465, 528, 681, 735
SfcI	CTRYAG	2 cut(s)	181, 340
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	5 cut(s)	197, 261, 471, 538, 700
SsiI	CCGC	2 cut(s)	192, 449
SspMI	CTAG	2 cut(s)	324, 693
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	588, 617
TaqI	TCGA	2 cut(s)	571, 781
TasI	AATT	5 cut(s)	197, 261, 471, 538, 700
TatI	WGTACW	2 cut(s)	429, 720
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	80
TscAI	CASTG	2 cut(s)	224, 591
TseFI	GTSAC	2 cut(s)	230, 611
Tsp45I	GTSAC	2 cut(s)	230, 611
TspDTI	ATGAA	5 cut(s)	5, 299, 327, 530, 575
TspRI	CASTG	2 cut(s)	224, 591
XapI	RAATTY	2 cut(s)	261, 700
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	2 cut(s)	324, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.