Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Forward (+)

206432 .. 208611

Gene Structure 2180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G01520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCGAAAATCGTTCAAGGATTCACTCAAGGCTCTTGAAGCTGATATCCAGTTCGCCAACACTCTGGCGTCAGAGTACCCAGAGGAGTATGATGGTGGCTACGTTCAGATGAGATTATCTTACAGCCCGGCGGCTCATCTCTTTCTCTTCCTTCTTCAGTGGACTGATTGTCATTTCGCTGGCGCTTTGGGCTTGCTTAGGATCCTTATTTATAAGGCATATGTTGATGGGAAGACCACAATGTCGCTACATGAACGCAAAACTAGTATCAGAGAATTCTATGATGTGTTGTTTCCTTCGCTATTGCAACTTCATGGAGGGATCACCGATGTAGAAGAAAGGAAACAGAAGGAGATATGCGACAAAAGATACCGTAAAAAGGACAGAACAGATAAAGGAAAGATGTCGGAGATCGATTTGGAGAGGGAAGAAGAGTGTGGAATCTGCTTGGAGATTCGAAACAAAGTTGTTCTTCCTACGTGCAATCACTCCATGTGTATAAACTGCTACAGAAACTGGCGTGCACGGTCACAGTCGTGCCCGTTCTGTCGAGGCAGCTTGAAAAGAGTGAATTCTGGTGATCTATGGATATACACTTGTAGCGCCGAGATTGCAGATTTACCAGCGATTTACAAGGAGAATCTGAAGAGGTTGTTGATATACATTGACAAGTTGCCTCTCGTTACTTCTGATCCAAATCTTGTCCCTTATGCTCCTCTTCCTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

242

Amino Acids

28.05

Weight (kDa)

8.45

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	143 - 189	3.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	145 - 184	3.4e-08	Ring finger domain
zf-C3HC4	PF00097	146 - 183	5e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AasI	GACNNNNNNGTC	1 cut(s)	241
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	4 cut(s)	196, 209, 329, 686
AcsI	RAATTY	2 cut(s)	275, 571
AcuI	CTGAAG	2 cut(s)	140, 665
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	16, 38, 562
AhdI	GACNNNNNGTC	1 cut(s)	168
AhlI	ACTAGT	1 cut(s)	263
AleI	CACNNNNGTG	1 cut(s)	535
AluBI	AGCT	2 cut(s)	41, 558
AluI	AGCT	2 cut(s)	41, 558
Alw21I	GWGCWC	1 cut(s)	526
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	4 cut(s)	196, 209, 329, 686
AlwNI	CAGNNNCTG	1 cut(s)	516
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	1 cut(s)	555
ApoI	RAATTY	2 cut(s)	275, 571
AspLEI	GCGC	2 cut(s)	185, 605
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	316, 590
AsuII	TTCGAA	1 cut(s)	457
BaeGI	GKGCMC	2 cut(s)	526, 542
BamHI	GGATCC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	1 cut(s)	567
BccI	CCATC	2 cut(s)	86, 221
BcnI	CCSGG	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	508
BfoI	RGCGCY	2 cut(s)	186, 606
BisI	GCNGC	2 cut(s)	132, 556
BlsI	GCNGC	2 cut(s)	133, 557
Bme1390I	CCNGG	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	457
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	49, 521
Bse8I	GATNNNNATC	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	722
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseNI	ACTGG	2 cut(s)	49, 521
BseRI	GAGGAG	2 cut(s)	98, 705
BseSI	GKGCMC	2 cut(s)	526, 542
BseXI	GCAGC	1 cut(s)	567
BshVI	ATCGAT	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	689
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	689
Bsp119I	TTCGAA	1 cut(s)	457
Bsp1286I	GDGCHC	2 cut(s)	526, 542
Bsp143I	GATC	5 cut(s)	201, 321, 411, 580, 691
BspACI	CCGC	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	203
BspPI	GGATC	4 cut(s)	196, 209, 329, 686
BspT104I	TTCGAA	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	49, 521
BssECI	CCNNGG	1 cut(s)	722
BssMI	GATC	5 cut(s)	201, 321, 411, 580, 691
BssNI	GRCGYC	1 cut(s)	68
Bst4CI	ACNGT	3 cut(s)	374, 528, 534
Bst6I	CTCTTC	4 cut(s)	152, 426, 641, 723
BstACI	GRCGYC	1 cut(s)	68
BstBAI	YACGTR	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	457
BstC8I	GCNNGC	3 cut(s)	181, 194, 522
BstDEI	CTNAG	1 cut(s)	197
BstH2I	RGCGCY	2 cut(s)	186, 606
BstHHI	GCGC	2 cut(s)	185, 605
BstKTI	GATC	5 cut(s)	204, 324, 414, 583, 694
BstMBI	GATC	5 cut(s)	201, 321, 411, 580, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 189, 611
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	508
BstSLI	GKGCMC	2 cut(s)	526, 542
BstV1I	GCAGC	1 cut(s)	567
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	201
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	414
BsuTUI	ATCGAT	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	3 cut(s)	181, 194, 522
CaiI	CAGNNNCTG	1 cut(s)	516
CfoI	GCGC	2 cut(s)	185, 605
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	3 cut(s)	251, 314, 493
CviJI	RGCY	7 cut(s)	32, 41, 99, 126, 134, 192, 558
CviKI_1	RGCY	7 cut(s)	32, 41, 99, 126, 134, 192, 558
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	5 cut(s)	203, 323, 413, 582, 693
DpnII	GATC	5 cut(s)	201, 321, 411, 580, 691
DrdI	GACNNNNNNGTC	1 cut(s)	241
DriI	GACNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	4 cut(s)	152, 426, 641, 723
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EarI	CTCTTC	4 cut(s)	152, 426, 641, 723
Eco32I	GATATC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	140, 665
EcoRI	GAATTC	2 cut(s)	275, 571
EcoRV	GATATC	1 cut(s)	46
FaeI	CATG	3 cut(s)	254, 317, 496
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	1 cut(s)	689
FatI	CATG	3 cut(s)	250, 313, 492
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	132, 556
Fsp4HI	GCNGC	2 cut(s)	132, 556
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	2 cut(s)	184, 604
GluI	GCNGC	2 cut(s)	132, 556
HaeII	RGCGCY	2 cut(s)	186, 606
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	2 cut(s)	185, 605
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	3 cut(s)	254, 317, 496
Hin6I	GCGC	2 cut(s)	183, 603
HinP1I	GCGC	2 cut(s)	183, 603
HinfI	GANTC	4 cut(s)	20, 441, 454, 640
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	316, 590
Hpy166II	GTNNAC	2 cut(s)	162, 524
Hpy188I	TCNGA	6 cut(s)	73, 108, 272, 409, 645, 691
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	2 cut(s)	162, 524
HpyAV	CCTTC	3 cut(s)	161, 306, 343
HpyCH4III	ACNGT	3 cut(s)	374, 528, 534
HpyCH4IV	ACGT	2 cut(s)	102, 479
HpyCH4V	TGCA	4 cut(s)	307, 483, 524, 614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 189, 611
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	2 cut(s)	102, 479
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	254, 317, 496
HspAI	GCGC	2 cut(s)	183, 603
Kzo9I	GATC	5 cut(s)	201, 321, 411, 580, 691
LmnI	GCTCC	1 cut(s)	718
LpnPI	CCDG	8 cut(s)	50, 62, 93, 141, 165, 502, 561, 636
Lsp1109I	GCAGC	1 cut(s)	567
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	2 cut(s)	102, 479
MaeIII	GTNAC	2 cut(s)	528, 682
MalI	GATC	5 cut(s)	203, 323, 413, 582, 693
MboI	GATC	5 cut(s)	201, 321, 411, 580, 691
MboII	GAAGA	9 cut(s)	139, 146, 244, 347, 440, 443, 464, 658, 710
MflI	RGATCY	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	526, 542
MluCI	AATT	2 cut(s)	275, 571
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	7 cut(s)	76, 311, 417, 545, 642, 687, 726
MslI	CAYNNNNRTG	1 cut(s)	535
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	38, 189, 611
NciI	CCSGG	1 cut(s)	128
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	5 cut(s)	201, 321, 411, 580, 691
NlaIII	CATG	3 cut(s)	254, 317, 496
NlaIV	GGNNCC	1 cut(s)	203
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	528
NspV	TTCGAA	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	535
PfeI	GAWTC	4 cut(s)	20, 441, 454, 640
PkrI	GCNGC	2 cut(s)	133, 557
Ppu21I	YACGTR	1 cut(s)	480
PsiI	TTATAA	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	535
SatI	GCNGC	2 cut(s)	132, 556
Sau3AI	GATC	5 cut(s)	201, 321, 411, 580, 691
ScrFI	CCNGG	1 cut(s)	128
SduI	GDGCHC	2 cut(s)	526, 542
SetI	ASST	5 cut(s)	43, 105, 482, 560, 653
SfcI	CTRYAG	1 cut(s)	508
SfuI	TTCGAA	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	2 cut(s)	275, 571
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	3 cut(s)	374, 528, 534
TaiI	ACGT	2 cut(s)	105, 482
TaqI	TCGA	3 cut(s)	414, 457, 550
TasI	AATT	2 cut(s)	275, 571
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	4 cut(s)	20, 441, 454, 640
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	528
TseI	GCWGC	1 cut(s)	555
Tsp45I	GTSAC	1 cut(s)	528
TspDTI	ATGAA	2 cut(s)	267, 302
TspRI	CASTG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	522
XapI	RAATTY	2 cut(s)	275, 571
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.