Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002901

Physical Location & Seq

Genomic Coordinates Forward (+)

10288146 .. 10291059

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG125100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCGAAAGTCTTTCAAGGATTCGCTTAAGGCGCTTGAAGCTGATATTCAGTTTGCCAATACTTTGGCGTCTGATTATCCAAGAGAATATGATGGGGCTTGCCTCCAAATGAGATTATCATACAGCCCCGCCGCTCAATTCTTTCTGTTTCTTATTCAGTGGACTGATTGTCACCTTGCCGGTGCCTTAGGATTGCTTAGAATTCTTATATACAGGGCATATGAGGATGGGAAGACCACCATGTCAATTCATGAAAGAAAAGCTAGTTTAAAAGAGTTCTACAGTGTAATATTTCCCTCATTATTGCAACTTCAAAGTGGAATGACTGATGTAGAAGAACGGAAACAGAAAGAAATCTGTTCCAAGTACAAGAGAAAAGATGAGACGGACAAAGGAAAGCTCTCCGAAATTGAGTTGGAGCGAGAAGAAGAATGTGGTATTTGTATGGAGATGAACAGCAAGGTCGTATTGCCCAATTGCAGTCACTCTTTGTGTATAAAGTGCTATCGGAACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

172

Amino Acids

19.96

Weight (kDa)

6.82

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01520 AT5G01520
fragaria_vesca	FvH4_3g04920 FvH4_6g11510 FvH4_6g11510
malus_domestica	MD04G1151400.v1.1 MD05G1314700.v1.1 MD10G1296100.v1.1 MD12G1165500.v1.1
prunus_persica	Prupe.4G044500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1 Prupe.6G276500_v2.0.a1
pyrus_communis	pycom04g13730 pycom05g29250 pycom10g24860 pycom12g15810
rosa_chinensis	RchiOBHm_Chr3g0463221 RchiOBHm_Chr5g0008081
rosa_laevigata	RLG00000024801 RLG00000031534
rosa_multiflora	Rmu_sc0001626.1_g000003 Rmu_sc0004643.1_g000001 Rmu_sc0017465.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068400 Rroxscaffold_6G00416790
rosa_rugosa	Rorug03G0062500 Rorug03G0062500 Rorug04G0433300
rosa_samantha	Rh3AG120700 Rh3BG125100 Rh3CG127200 Rh3DG126300 Rh5BG058100 Rh5CG068200 Rh5DG057300
rosa_wichuraiana	Rw3G010250 Rw5G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AccB1I	GGYRCC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	134
AciI	CCGC	2 cut(s)	129, 132
AcsI	RAATTY	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	1 cut(s)	368
AflII	CTTAAG	1 cut(s)	26
AgsI	TTSAA	3 cut(s)	16, 38, 314
AhdI	GACNNNNNGTC	1 cut(s)	168
AluBI	AGCT	3 cut(s)	41, 263, 400
AluI	AGCT	3 cut(s)	41, 263, 400
Alw26I	GTCTC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	164
AxyI	CCTNAGG	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	239
BccI	CCATC	2 cut(s)	86, 221
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	518
Bse21I	CCTNAGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	518
BshNI	GGYRCC	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
BspACI	CCGC	2 cut(s)	129, 132
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	518
BssAI	RCCGGY	1 cut(s)	179
BssNI	GRCGYC	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	187, 197
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 38
BstSFI	CTRYAG	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	64
Bsu36I	CCTNAGG	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	164, 289
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	1 cut(s)	250
CfoI	GCGC	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	179
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	2 cut(s)	241, 251
CviJI	RGCY	5 cut(s)	41, 98, 126, 263, 400
CviKI_1	RGCY	5 cut(s)	41, 98, 126, 263, 400
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	187, 197
DraI	TTTAAA	1 cut(s)	270
DrdI	GACNNNNNNGTC	1 cut(s)	241
DriI	GACNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1105I	GACNNNNNGTC	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	2 cut(s)	244, 254
FatI	CATG	2 cut(s)	240, 250
FauI	CCCGC	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	35
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	244, 254
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	73, 406, 510
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	2 cut(s)	307, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 38
HpyF3I	CTNAG	2 cut(s)	187, 197
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	244, 254
HspAI	GCGC	1 cut(s)	32
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	3 cut(s)	193, 199, 499
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	2 cut(s)	170, 482
MbiI	CCGCTC	1 cut(s)	134
MboII	GAAGA	4 cut(s)	244, 347, 437, 440
MfeI	CAATTG	1 cut(s)	475
MluCI	AATT	5 cut(s)	137, 201, 246, 408, 475
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	3 cut(s)	113, 217, 307
MseI	TTAA	2 cut(s)	27, 269
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	180
MunI	CAATTG	1 cut(s)	475
MwoI	GCNNNNNNNGC	2 cut(s)	31, 38
NdeI	CATATG	1 cut(s)	220
NlaIII	CATG	2 cut(s)	244, 254
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	170, 482
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	27, 269
SatI	GCNGC	1 cut(s)	132
SetI	ASST	5 cut(s)	43, 177, 265, 402, 465
SfcI	CTRYAG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	5 cut(s)	137, 201, 246, 408, 475
SsiI	CCGC	2 cut(s)	129, 132
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	284
TasI	AATT	5 cut(s)	137, 201, 246, 408, 475
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	27, 269
Tru9I	TTAA	2 cut(s)	27, 269
TscAI	CASTG	2 cut(s)	164, 289
TseFI	GTSAC	2 cut(s)	170, 482
Tsp45I	GTSAC	2 cut(s)	170, 482
TspDTI	ATGAA	3 cut(s)	239, 267, 467
TspGWI	ACGGA	2 cut(s)	355, 401
TspRI	CASTG	2 cut(s)	164, 289
Vha464I	CTTAAG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	201
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.