Rmu_sc0039673.1_g000001

Sphingolipid delta(4)-desaturase DES1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039673.1
OG0015507
Physical Location & Seq
Reverse (-)
2 .. 554
553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039673.1_g000001.1.cds

Sequence Viewer

Length: 553 bp
atgaaattttggttgccacagattactgtggttgtcttgcttcagctctgcactgctgcagcacttcacgatgcaggctggctgaagattctggcaatagcgtacttcttcggctcttttctcaaccacaacctcttcttggccatccatgagctcagccacaatctcgccttctcaaccccagtctacaaccgttggcttggtatttttgctaacctcccaattggcgttcccatgtctgtccccttccagaagtatcacctcgagcaccatcgcttccaaggagtagatggcattgacatggacatcccaagcaaagttgaggctcatgtggtgagaaatgtgttcaccaaatccgtatgggttctacttcaactcttcttctacgctcttcggcctgtgtttctgaaaccgaaaccccctggttgttgggagttcatcaatctttttgtccagatatccctcgatgtctccatggtttacttttgtggttggaagtcttttgcttatttgattctctctacatttgttgggggtgggatgcaccctatgg

Protein Analysis

184

Amino Acids

21.07

Weight (kDa)

8.81

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015507)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04930
fragaria_vesca FvH4_3g04930
malus_domestica MD10G1295900.v1.1
prunus_persica Prupe.4G044600_v2.0.a1
pyrus_communis pycom10g24850
rosa_chinensis RchiOBHm_Chr5g0008091
rosa_laevigata RLG00000031535
rosa_multiflora Rmu_sc0017465.1_g000005 Rmu_sc0039673.1_g000001
rosa_roxburghii Rroxscaffold_1G00068390
rosa_rugosa Rorug04G0433300
rosa_samantha Rh5AG061400 Rh5BG058200 Rh5CG068300 Rh5DG057500
rosa_wichuraiana Rw5G005920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 5
AcuI CTGAAG 2 cut(s) 26, 104
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 374
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 2 cut(s) 46, 154
AluI AGCT 2 cut(s) 46, 154
Alw21I GWGCWC 2 cut(s) 156, 270
Alw26I GTCTC 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 141, 395
ApeKI GCWGC 2 cut(s) 56, 59
ApoI RAATTY 1 cut(s) 5
AsuHPI GGTGA 3 cut(s) 251, 340, 346
AvaI CYCGRG 1 cut(s) 263
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 156, 270
BbvI GCAGC 2 cut(s) 43, 71
BccI CCATC 3 cut(s) 152, 279, 284
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 475
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 2 cut(s) 57, 60
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 2 cut(s) 58, 61
Bme1390I CCNGG 1 cut(s) 423
BmeT110I CYCGRG 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 423
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 61, 531
BmuI ACTGGG 1 cut(s) 176
Bpu1102I GCTNAGC 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 280, 421, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 280, 421, 474
BseGI GGATG 3 cut(s) 144, 306, 546
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 43, 71
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 2 cut(s) 143, 397
BsiHKAI GWGCWC 2 cut(s) 156, 270
BsiHKCI CYCGRG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 475
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 2 cut(s) 143, 397
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 156, 270
Bsp1720I GCTNAGC 1 cut(s) 155
Bsp19I CCATGG 1 cut(s) 474
BspANI GGCC 2 cut(s) 143, 397
BspCNI CTCAG 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 396
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 3 cut(s) 280, 421, 474
BssT1I CCWWGG 2 cut(s) 280, 474
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 28, 194
Bst6I CTCTTC 3 cut(s) 140, 383, 396
BstC8I GCNNGC 2 cut(s) 76, 80
BstDEI CTNAG 1 cut(s) 155
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 3 cut(s) 144, 306, 546
BstMAI GTCTC 1 cut(s) 475
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 43, 71
BsuRI GGCC 2 cut(s) 143, 397
BtgI CCRYGG 1 cut(s) 474
BtgZI GCGATG 1 cut(s) 257
BtsCI GGATG 3 cut(s) 144, 306, 546
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 76, 80
Csp6I GTAC 1 cut(s) 103
CviAII CATG 5 cut(s) 149, 235, 301, 329, 475
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 3 cut(s) 140, 383, 396
EarI CTCTTC 3 cut(s) 140, 383, 396
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 280, 474
Eco24I GRGCYC 1 cut(s) 156
Eco32I GATATC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 26, 104
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 421
EcoRV GATATC 1 cut(s) 459
EcoT14I CCWWGG 2 cut(s) 280, 474
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 280, 474
FaeI CATG 5 cut(s) 152, 238, 304, 332, 478
FaiI YATR 7 cut(s) 150, 236, 302, 330, 361, 476, 551
FaqI GGGAC 1 cut(s) 227
FatI CATG 5 cut(s) 148, 234, 300, 328, 474
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 57, 60
FokI GGATG 2 cut(s) 131, 293
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 57, 60
GluI GCNGC 2 cut(s) 57, 60
HaeIII GGCC 2 cut(s) 143, 397
Hin1II CATG 5 cut(s) 152, 238, 304, 332, 478
HinfI GANTC 2 cut(s) 88, 514
HphI GGTGA 3 cut(s) 251, 340, 346
Hpy166II GTNNAC 3 cut(s) 187, 348, 481
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 3 cut(s) 68, 250, 454
Hpy8I GTNNAC 3 cut(s) 187, 348, 481
HpyAV CCTTC 2 cut(s) 181, 256
HpyCH4III ACNGT 2 cut(s) 28, 194
HpyCH4V TGCA 4 cut(s) 51, 59, 74, 544
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 5 cut(s) 152, 238, 304, 332, 478
LguI GCTCTTC 1 cut(s) 396
LpnPI CCDG 9 cut(s) 60, 64, 77, 195, 263, 408, 411, 435, 467
Lsp1109I GCAGC 2 cut(s) 43, 71
LweI GCATC 2 cut(s) 61, 531
MboII GAAGA 6 cut(s) 97, 100, 127, 370, 373, 383
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 2 cut(s) 156, 270
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 2 cut(s) 5, 222
MluNI TGGCCA 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 473
MnlI CCTC 5 cut(s) 143, 227, 272, 316, 473
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 423
NcoI CCATGG 1 cut(s) 474
NlaIII CATG 5 cut(s) 152, 238, 304, 332, 478
PaeR7I CTCGAG 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 88, 514
PkrI GCNGC 2 cut(s) 58, 61
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspXI VCTCGAGB 1 cut(s) 263
PstI CTGCAG 1 cut(s) 61
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 156
SapI GCTCTTC 1 cut(s) 396
SatI GCNGC 2 cut(s) 57, 60
ScrFI CCNGG 1 cut(s) 423
SduI GDGCHC 2 cut(s) 156, 270
SetI ASST 5 cut(s) 48, 135, 156, 219, 264
SfaNI GCATC 2 cut(s) 61, 531
SfcI CTRYAG 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 2 cut(s) 5, 222
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 2 cut(s) 280, 474
TaaI ACNGT 2 cut(s) 28, 194
TaqI TCGA 2 cut(s) 264, 465
TasI AATT 2 cut(s) 5, 222
TfiI GAWTC 2 cut(s) 88, 514
TscAI CASTG 1 cut(s) 58
TseI GCWGC 2 cut(s) 56, 59
TspDTI ATGAA 2 cut(s) 17, 427
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 5
XcmI CCANNNNNNNNNTGG 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.