Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015507

Physical Location & Seq

Genomic Coordinates Forward (+)

2842698 .. 2845226

Gene Structure 2529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGGAGAGGGGGAGAGAGAGATGGAGAAGAACAAGAGGGTGTGATGGCCACGGACTTCTTCTGGTCTTATACGGATGAGCCTCACGCTTCTCGCCGCCGTCAGATCCTCTCTCAGTACCCTCAGATTAAGGAGCTCTTTGGCCCTGACCCTTTGGCTTTTCTCAAGATTACTTTGGTCGTGATGCTTCAGCTCTCCACTGCTGCAGCGCTTCACAATGCTGGATGGCTGAAGATTCTGGCAATAGCCTACTTCTTTGGCTCTTTTCTCAACCACAACCTCTTCTTGGCCATCCATGAGCTCAGCCACAATCTTGCATTCTCAACCCCAGTCTACAACCGTTGGCTTGGTATCTTTGCTAACCTCCCAATTGGGGTTCCCATGTCTGTCACCTTTCAGAAGTATCACCTCGAGCACCATCGCTTCCAAGGTGTAGATGGCATTGACATGGACATCCCAAGCAAAGTCGAGGCTCATATGGTGAGAAATGTGTTCACCAAATCCATATGGGTTCTACTTCAACTCTTCTTCTATGCTTTTCGGCCTGTGTTCTTGAAACCAAAACCCCCTGGTTGTTGGGAGTTCATCAACCTTTTTGTCCAGATATCGCTCGATGTCTCCATGGTTTACTTCTGTGGTTGGAAGTCTTTTGCTTATTTGATTCTCTCTACATTTGTTGGGGGTGGGATGCATCCTATGGCTGGTCACTTCATTTCAGAGCATTACGTGTTCAATCCTGATCAAGAGACATATTCTTACTATGGCCCTCTTAATCTCATGACTTGGAGCGTAGGGTACCATAACGAACACCATGACTTTCCCAGAATTCCTGGGAGCAAGCTCCACAAGGTGAAGTCTATTGCACCAGAATACTACGAGGGTTTGGAATGTTATAAATCATGGAGTCAGGTCATCTACATGTATATAATGGACAGAACAGTCGGGCCATTTAGCCGAATGAAGAGGAAGCCAAGCAAATCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016491 GO:0016705 GO:0030148 GO:0034641 GO:0042284 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0046467 GO:0046513 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

FA_desaturase Lipid_DES

Protein Analysis

329

Amino Acids

37.98

Weight (kDa)

7.8

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipid_DES	PF08557	17 - 52	6e-20	Sphingolipid Delta4-desaturase (DES)
FA_desaturase	PF00487	75 - 292	6e-23	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04930
fragaria_vesca	FvH4_3g04930
malus_domestica	MD10G1295900.v1.1
prunus_persica	Prupe.4G044600_v2.0.a1
pyrus_communis	pycom10g24850
rosa_chinensis	RchiOBHm_Chr5g0008091
rosa_laevigata	RLG00000031535
rosa_multiflora	Rmu_sc0017465.1_g000005 Rmu_sc0039673.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068390
rosa_rugosa	Rorug04G0433300
rosa_samantha	Rh5AG061400 Rh5BG058200 Rh5CG068300 Rh5DG057500
rosa_wichuraiana	Rw5G005920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	894
AasI	GACNNNNNNGTC	1 cut(s)	938
Acc65I	GGTACC	1 cut(s)	795
AccB1I	GGYRCC	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	2 cut(s)	48, 288
AcsI	RAATTY	1 cut(s)	825
AcuI	CTGAAG	2 cut(s)	173, 251
AdeI	CACNNNGTG	1 cut(s)	850
AfaI	GTAC	2 cut(s)	119, 797
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	3 cut(s)	286, 373, 701
AflIII	ACRYGT	2 cut(s)	726, 918
AgsI	TTSAA	3 cut(s)	521, 556, 733
AjnI	CCWGG	2 cut(s)	568, 829
AluBI	AGCT	4 cut(s)	136, 193, 301, 841
AluI	AGCT	4 cut(s)	136, 193, 301, 841
Alw21I	GWGCWC	3 cut(s)	138, 303, 417
Alw26I	GTCTC	2 cut(s)	622, 740
AlwI	GGATC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	410
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	6 cut(s)	48, 142, 288, 542, 763, 944
ApeKI	GCWGC	2 cut(s)	203, 206
ApoI	RAATTY	1 cut(s)	825
Asp718I	GGTACC	1 cut(s)	795
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	3 cut(s)	143, 764, 944
AsuHPI	GGTGA	5 cut(s)	382, 398, 487, 493, 862
AvaI	CYCGRG	1 cut(s)	410
BalI	TGGCCA	2 cut(s)	50, 290
BanI	GGYRCC	1 cut(s)	795
BanII	GRGCYC	2 cut(s)	138, 303
Bbv12I	GWGCWC	3 cut(s)	138, 303, 417
BbvI	GCAGC	2 cut(s)	190, 218
BccI	CCATC	6 cut(s)	17, 40, 219, 299, 426, 431
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	2 cut(s)	570, 831
BclI	TGATCA	1 cut(s)	739
BcoDI	GTCTC	2 cut(s)	622, 740
BfmI	CTRYAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	3 cut(s)	97, 204, 207
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	3 cut(s)	98, 205, 208
Bme1390I	CCNGG	2 cut(s)	570, 831
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	3 cut(s)	143, 764, 944
BmiI	GGNNCC	2 cut(s)	378, 797
BmrFI	CCNGG	2 cut(s)	570, 831
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	3 cut(s)	174, 678, 700
BmuI	ACTGGG	1 cut(s)	323
Bpu1102I	GCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	149
BsaAI	YACGTR	1 cut(s)	727
BsaJI	CCNNGG	5 cut(s)	51, 427, 568, 621, 830
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 373, 701
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	2 cut(s)	570, 831
BseDI	CCNNGG	5 cut(s)	51, 427, 568, 621, 830
BseGI	GGATG	6 cut(s)	82, 230, 291, 453, 691, 693
BseLI	CCNNNNNNNGG	3 cut(s)	286, 373, 701
BseMII	CTCAG	3 cut(s)	128, 137, 316
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	190, 218
BshFI	GGCC	6 cut(s)	50, 144, 290, 544, 765, 946
BshNI	GGYRCC	1 cut(s)	795
BsiHKAI	GWGCWC	3 cut(s)	138, 303, 417
BsiHKCI	CYCGRG	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	286, 373, 701
BsmAI	GTCTC	2 cut(s)	622, 740
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	6 cut(s)	50, 144, 290, 544, 765, 946
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	138, 303, 417
Bsp143I	GATC	2 cut(s)	105, 739
Bsp1720I	GCTNAGC	1 cut(s)	302
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	6 cut(s)	50, 144, 290, 544, 765, 946
BspCNI	CTCAG	3 cut(s)	127, 136, 315
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	2 cut(s)	378, 797
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	795
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	5 cut(s)	51, 427, 568, 621, 830
BssMI	GATC	2 cut(s)	105, 739
BssT1I	CCWWGG	2 cut(s)	427, 621
Bst2UI	CCWGG	2 cut(s)	570, 831
Bst4CI	ACNGT	2 cut(s)	341, 940
Bst6I	CTCTTC	3 cut(s)	287, 530, 956
BstBAI	YACGTR	1 cut(s)	727
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	3 cut(s)	114, 123, 302
BstDSI	CCRYGG	2 cut(s)	51, 621
BstF5I	GGATG	6 cut(s)	82, 230, 291, 453, 691, 693
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	2 cut(s)	108, 742
BstMAI	GTCTC	2 cut(s)	622, 740
BstMBI	GATC	2 cut(s)	105, 739
BstNI	CCWGG	2 cut(s)	570, 831
BstNSI	RCATGY	1 cut(s)	922
BstSCI	CCNGG	2 cut(s)	568, 829
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	190, 218
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	6 cut(s)	50, 144, 290, 544, 765, 946
BtgI	CCRYGG	2 cut(s)	51, 621
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	6 cut(s)	82, 230, 291, 453, 691, 693
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	839
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	3 cut(s)	143, 764, 944
Csp6I	GTAC	2 cut(s)	118, 796
CviAII	CATG	8 cut(s)	296, 382, 448, 622, 778, 812, 900, 919
CviQI	GTAC	2 cut(s)	118, 796
DdeI	CTNAG	3 cut(s)	114, 123, 302
DpnI	GATC	2 cut(s)	107, 741
DpnII	GATC	2 cut(s)	105, 739
DraIII	CACNNNGTG	1 cut(s)	850
DrdI	GACNNNNNNGTC	1 cut(s)	938
DseDI	GACNNNNNNGTC	1 cut(s)	938
EaeI	YGGCCR	2 cut(s)	48, 288
Eam1104I	CTCTTC	3 cut(s)	287, 530, 956
EarI	CTCTTC	3 cut(s)	287, 530, 956
Ecl136II	GAGCTC	2 cut(s)	136, 301
Eco130I	CCWWGG	2 cut(s)	427, 621
Eco24I	GRGCYC	2 cut(s)	138, 303
Eco32I	GATATC	1 cut(s)	606
Eco47III	AGCGCT	1 cut(s)	210
Eco53kI	GAGCTC	2 cut(s)	136, 301
Eco57I	CTGAAG	2 cut(s)	173, 251
Eco88I	CYCGRG	1 cut(s)	410
EcoICRI	GAGCTC	2 cut(s)	136, 301
EcoRI	GAATTC	1 cut(s)	825
EcoRII	CCWGG	2 cut(s)	568, 829
EcoRV	GATATC	1 cut(s)	606
EcoT14I	CCWWGG	2 cut(s)	427, 621
EcoT22I	ATGCAT	1 cut(s)	693
EcoT38I	GRGCYC	2 cut(s)	138, 303
ErhI	CCWWGG	2 cut(s)	427, 621
FaeI	CATG	8 cut(s)	299, 385, 451, 625, 781, 815, 903, 922
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	8 cut(s)	295, 381, 447, 621, 777, 811, 899, 918
FauNDI	CATATG	2 cut(s)	477, 506
FbaI	TGATCA	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	97, 204, 207
FokI	GGATG	6 cut(s)	89, 237, 278, 440, 678, 700
FriOI	GRGCYC	2 cut(s)	138, 303
Fsp4HI	GCNGC	3 cut(s)	97, 204, 207
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	3 cut(s)	97, 204, 207
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	6 cut(s)	50, 144, 290, 544, 765, 946
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	8 cut(s)	299, 385, 451, 625, 781, 815, 903, 922
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	3 cut(s)	235, 661, 904
HphI	GGTGA	5 cut(s)	382, 398, 487, 493, 862
Hpy166II	GTNNAC	3 cut(s)	334, 495, 628
Hpy188I	TCNGA	5 cut(s)	105, 126, 399, 718, 982
Hpy188III	TCNNGA	7 cut(s)	166, 181, 553, 601, 737, 743, 778
Hpy8I	GTNNAC	3 cut(s)	334, 495, 628
HpyCH4III	ACNGT	2 cut(s)	341, 940
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	4 cut(s)	206, 317, 691, 863
HpyF3I	CTNAG	3 cut(s)	114, 123, 302
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	8 cut(s)	299, 385, 451, 625, 781, 815, 903, 922
HspAI	GCGC	1 cut(s)	209
KpnI	GGTACC	1 cut(s)	799
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	2 cut(s)	105, 739
LmnI	GCTCC	4 cut(s)	133, 786, 834, 846
Lsp1109I	GCAGC	2 cut(s)	190, 218
LweI	GCATC	3 cut(s)	174, 678, 700
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	2 cut(s)	388, 704
MalI	GATC	2 cut(s)	107, 741
MboI	GATC	2 cut(s)	105, 739
MboII	GAAGA	7 cut(s)	41, 52, 244, 274, 517, 520, 973
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	3 cut(s)	138, 303, 417
MlsI	TGGCCA	2 cut(s)	50, 290
MluCI	AATT	2 cut(s)	369, 825
MluNI	TGGCCA	2 cut(s)	50, 290
MlyI	GAGTC	1 cut(s)	913
MmeI	TCCRAC	1 cut(s)	620
Mox20I	TGGCCA	2 cut(s)	50, 290
Mph1103I	ATGCAT	1 cut(s)	693
MscI	TGGCCA	2 cut(s)	50, 290
MseI	TTAA	2 cut(s)	129, 771
MslI	CAYNNNNRTG	2 cut(s)	446, 917
Msp20I	TGGCCA	2 cut(s)	50, 290
MspR9I	CCNGG	2 cut(s)	570, 831
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	2 cut(s)	570, 831
NcoI	CCATGG	1 cut(s)	621
NdeI	CATATG	2 cut(s)	477, 506
NdeII	GATC	2 cut(s)	105, 739
NlaIII	CATG	8 cut(s)	299, 385, 451, 625, 781, 815, 903, 922
NlaIV	GGNNCC	2 cut(s)	378, 797
NmuCI	GTSAC	2 cut(s)	388, 704
NsiI	ATGCAT	1 cut(s)	693
NspI	RCATGY	1 cut(s)	922
PaeR7I	CTCGAG	1 cut(s)	410
PagI	TCATGA	1 cut(s)	777
PciI	ACATGT	1 cut(s)	918
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	235, 661
PkrI	GCNGC	3 cut(s)	98, 205, 208
PleI	GAGTC	1 cut(s)	912
PpsI	GAGTC	1 cut(s)	912
Ppu21I	YACGTR	1 cut(s)	727
PscI	ACATGT	1 cut(s)	918
PsiI	TTATAA	1 cut(s)	894
Psp124BI	GAGCTC	2 cut(s)	138, 303
Psp6I	CCWGG	2 cut(s)	568, 829
PspGI	CCWGG	2 cut(s)	568, 829
PspN4I	GGNNCC	2 cut(s)	378, 797
PspPI	GGNCC	3 cut(s)	143, 764, 944
PspXI	VCTCGAGB	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	2 cut(s)	119, 797
RsaNI	GTAC	2 cut(s)	118, 796
RseI	CAYNNNNRTG	2 cut(s)	446, 917
SacI	GAGCTC	2 cut(s)	138, 303
SaqAI	TTAA	2 cut(s)	129, 771
SatI	GCNGC	3 cut(s)	97, 204, 207
Sau3AI	GATC	2 cut(s)	105, 739
Sau96I	GGNCC	3 cut(s)	143, 764, 944
SchI	GAGTC	1 cut(s)	913
ScrFI	CCNGG	2 cut(s)	570, 831
SduI	GDGCHC	3 cut(s)	138, 303, 417
SfaNI	GCATC	3 cut(s)	174, 678, 700
SfcI	CTRYAG	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	446, 917
SmlI	CTYRAG	2 cut(s)	164, 410
SmoI	CTYRAG	2 cut(s)	164, 410
Sse9I	AATT	2 cut(s)	369, 825
SsiI	CCGC	1 cut(s)	97
SstI	GAGCTC	2 cut(s)	138, 303
StyD4I	CCNGG	2 cut(s)	568, 829
StyI	CCWWGG	2 cut(s)	427, 621
TaaI	ACNGT	2 cut(s)	341, 940
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	3 cut(s)	411, 468, 612
TasI	AATT	2 cut(s)	369, 825
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	235, 661
Tru1I	TTAA	2 cut(s)	129, 771
Tru9I	TTAA	2 cut(s)	129, 771
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	388, 704
TseI	GCWGC	2 cut(s)	203, 206
Tsp45I	GTSAC	2 cut(s)	388, 704
TspDTI	ATGAA	3 cut(s)	574, 700, 974
TspGWI	ACGGA	2 cut(s)	68, 89
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	825
XceI	RCATGY	1 cut(s)	922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.