Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009295

Physical Location & Seq

Genomic Coordinates Forward (+)

2746114 .. 2753014

Gene Structure 6901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G05420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3267 bp

ATGAGCTCATGGAACTACGTTGTTACGGCTCACAAACCGACCAGTGTCACTCACTCGTGCGTTGGCAACTTCACAAGTCCTCAAGAGCTCAATCTCATTGTCGCGAAATGTACTCGAATCGAGATCCATTTGCTTACCCCACAAGGACTTCAGCCTATGTTGGACGTTCCTATATATGGAAGAATCGCTACTCTGGAGTTGTTCCGACCCCATGGCGAAGCGCAAGACTTTTTGTTCATTGCAACTGAGAGATACAAATTCTGTGTTCTTCAATGGGATCCTGAGTCCTCTGAGCTTATTACAAGAGCAATGGGGGATGTTTCTGATCGTATAGGCCGGCCAACAGACAATGGTCAGATTGGTATAATTGATCCAGATTGTAGATTAATTGGACTCCATCTGTATGACGGCTTGTTCAAGGTTATTCCATTTGATAATAAGGGACAGCTCAAGGAAGCTTTTAATATCAGGCTTGAGGAATTGCAGGTTCTGGATATCAAGTTTCTGTTTGGATGTGCAAAGCCCACTATTGCAGTACTATATCAGGACAACAAAGATGCTCGTCATGTCAAAACATATGAAGTCTCTCTTAAAGATAAGGATTTTGTCGAGGGTCCATGGTCTCAGAACAGTCTCGACAATGGTGCTGACTTGCTGATTCCTGTACCACCACCGCTCTGTGGTGTCCTTATTATTGGTGAAGAAACAATTGTCTATTGCAGTGCTAGTGCATTCAAAGCAATACCAATAAGACCTTCCATCACTAAAGCATATGGAAGAGTTGATGTTGATGGCTCTAGATATCTTCTTGGTGACCATGCTGGAATGATTCATCTGCTTGTTATAACGCACGAGAAAGAAAAGGTCACTGGCCTAAAAATTGAGCTTTTGGGTGAAACATCTATTGCATCGACTATATCGTACCTTGACAATGCCGTTGTCTTTGTCGGCTCAAGCTATGGTGATTCACAGCTAGTAAAGCTGAATCTACACCCTGATGCAAAAGGCTCATATGTAGAAGTCTTGGAAAGGTATATCAACTTGGGGCCTATTGTCGACTTTTGTGTAGTTGACCTCGAGAGACAGGGGCAAGGTCAGGTTGTAACTTGTTCTGGAGCATTTAAGGATGGTTCCCTCCGCGTAGTTCGCAATGGAATAGGAATCAATGAACAGGCGTCTGTGGAACTTCAAGGTATCAAAGGAATGTGGTCGTTGAAATCTTCAATTGATGAAGCCTTCGATACATTTCTTGTTGTTAGCTTTATCAGTGAAACTCGCATATTAGCCATGAATCTTGAGGATGAACTGGAAGAAACAGAGATTGAGGGCTTCTTGTCTCAAGTGCAGACGTTATTTTGCCATGATGCTGTGTACAATCAACTTGTACAGGTTACCTCAAATTCTGTTAGACTAGTCAGTTCTACAACTAGAGAATTGCGGGACGAGTGGCATGCCCCAGCTGGATTCACTGTTAATGTTGCAACTGCAAATGCCAGCCAGGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATGGGAAATTGACGGAAGTGCAACATGCCCTTTTGGAGTACGAGGTTTCCTGTCTTGATATAAACCCTATCGGTGACAATCCTAATTACAGTCAGCTAGCTGCGGTTGGGATGTGGACAGATATAAGTGTGAGGATCTTTTCGCTGCCAGAATTGACTCTTATTACAAAAGAGCAACTTGGAGGGGAAATAATTCCCCGATCTGTTCTTCTTTGTGCATTCGAAGGGATATCTTACTTGCTATGTGCTCTTGGAGATGGCCATCTTTTGAACTTCCAGATGGATACAACTACCGGACAATTAAAAGACAGGAAAAAAGTATCACTCGGGACTCAGCCTATAACTCTGCGTACATTTTCATCAAAAAGCGCCACACATGTCTTTGCTGCATCAGATAGACCAACCGTGATCTATAGCAGCAACAAGAAGCTGTTATATAGCAATGTCAATCTTAAAGAAGTTAGTCATATGTGCCCTTTCAATTCTGCTGCTTTTCCCGACAGTTTAGCAATTGCCAGGGAAGGTGAACTTACGATTGGAACCATTGATGATATTCAGAAGCTTCACATACGTACTATTCCTCTTGGAGAGCATGCTCGTCGAATTTGCCATCAGGAGCAGACACGTACATTTGGTATCTGCAGTTTGGGAAACCAGTCAAATTCCGAAGAATCTGAAATGCACTTTGTCCGTCTTTTGGACGACCAGACTTTCGAGTTTATGTCAACTTACCCCTTGGATTCCTTTGAATATGGTTGTTCAATTCTGAGCTGCTCATTCACCGAAGATAAAAATGTCTATTACTGCGTTGGAACCGCATATGTTTTACCGGAGGAAAATGAACCAACTAAGGGAAGGATATTAGTATTTATAGTCGAAGATGGGAGGTTGCAGCTAATCGCCGAGAAAGAAACCAAAGGAGCTGTTTATTCTCTCAATGCCTTTAATGGAAAACTTCTTGCTGCTATTAATCAGAAGATTCAGTTGTACAAGTGGATGCTGAGGGATGATGGCACTCGTGAACTGCAGTCTGAATGCGGACATCACGGACACATTCTAGCTCTCTATGTGCAGACCCGTGGAGACTTTATAGTTGTTGGTGATCTCATGAAATCAATCTCCTTATTGCTATACAAGCACGAGGAAGGTGCAATTGAGGAGCGGGCTCGGGATTACAATGCAAATTGGATGTCAGCGGTTGAGATACTCGATGATGATATTTACCTCGGTGCTGAGAACAATTTCAATCTGTTAACAGTGAAAAAGAACAGTGAAGGTGCTACTGATGAAGAACGAGGACGGTTAGAGGTAGTTGGAGAGTATCACCTTGGGGAATTTGTGAACAGATTCCGCCATGGATCTCTAGTAATGAGGCTACCTGATTCAGAGATTGGTCAGATCCCAACTGTCATCTTTGGTACAGTCAATGGAGTGATTGGAGTAATAGCTTCACTTCCTCAAGAACAATATACTTTCTTGGAGAAGTTGCAGTCAAGTTTGAGAAAAGTGATTAAAGGAGTCGGCGGATTAAGCCACGAGCAATGGAGGTCGTTTAATAACGAGAAAAGAACCGCGGAAGCGAGGAATTTCTTGGATGGTGACTTAATCGAATCGTTTCTGGATCTGAGTAGAAACAAGATGGAGGATATATCGAAATCCATGAATGTTCAAGTGGAGGAGTTGTGTAAGAGAGTTGAAGAACTCACTAGGCTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 ko05161 ko05203 map03420 map04120 map05161 map05203

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1088

Amino Acids

121.3

Weight (kDa)

5.14

Isoelectric Point (pI)

34.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	15 - 343	1.6e-79	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	389 - 698	9.6e-69	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	745 - 1057	1.3e-78	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05420 AT4G05420 AT4G21100
fragaria_vesca	FvH4_3g09700 FvH4_3g09700
malus_domestica	MD00G1109600.v1.1 MD05G1276000.v1.1
prunus_persica	Prupe.4G088300_v2.0.a1 Prupe.4G088300_v2.0.a1
pyrus_communis	pycom05g25700 pycom10g21110
rosa_chinensis	RchiOBHm_Chr5g0015371
rosa_laevigata	RLG00000032196
rosa_multiflora	Rmu_sc0017755.1_g000009 Rmu_ssc0000085.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061090
rosa_rugosa	Rorug05G0026900
rosa_samantha	Rh5AG120500 Rh5BG119300 Rh5CG129900 Rh5DG118500
rosa_wichuraiana	Rw5G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	845
Acc36I	ACCTGC	1 cut(s)	475
AccBSI	CCGCTC	2 cut(s)	676, 2710
AccI	GTMKAC	1 cut(s)	1056
AccII	CGCG	3 cut(s)	104, 1140, 3122
AclWI	GGATC	8 cut(s)	118, 272, 285, 365, 1691, 2914, 2941, 3177
AcoI	YGGCCR	2 cut(s)	338, 1807
AcsI	RAATTY	6 cut(s)	257, 1399, 2151, 2209, 2882, 3133
AcuI	CTGAAG	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	1175
AfiI	CCNNNNNNNGG	4 cut(s)	176, 680, 2245, 2399
AflIII	ACRYGT	2 cut(s)	1924, 2171
AhlI	ACTAGT	1 cut(s)	1411
AjnI	CCWGG	2 cut(s)	1497, 2063
AjuI	GAANNNNNNNTTGG	4 cut(s)	739, 771, 2067, 2099
Alw21I	GWGCWC	3 cut(s)	8, 90, 1798
Alw26I	GTCTC	6 cut(s)	589, 627, 638, 1075, 1341, 2625
AlwI	GGATC	8 cut(s)	118, 272, 285, 365, 1691, 2914, 2941, 3177
AlwNI	CAGNNNCTG	1 cut(s)	490
Ama87I	CYCGRG	3 cut(s)	1076, 1874, 2715
AoxI	GGCC	5 cut(s)	334, 338, 871, 1046, 1807
ApeKI	GCWGC	8 cut(s)	1649, 1693, 1934, 1965, 2036, 2319, 2440, 2510
ApoI	RAATTY	6 cut(s)	257, 1399, 2151, 2209, 2882, 3133
ArsI	GACNNNNNNTTYG	4 cut(s)	2243, 2275, 2723, 2755
AseI	ATTAAT	2 cut(s)	386, 2517
Asp700I	GAANNNNTTC	4 cut(s)	1740, 2789, 2894, 3162
AspLEI	GCGC	2 cut(s)	223, 1919
AspS9I	GGNCC	2 cut(s)	614, 1046
AsuII	TTCGAA	1 cut(s)	1770
AsuNHI	GCTAGC	1 cut(s)	1645
AvaI	CYCGRG	3 cut(s)	1076, 1874, 2715
AvaII	GGWCC	1 cut(s)	614
BaeGI	GKGCMC	1 cut(s)	2024
BalI	TGGCCA	1 cut(s)	1809
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	3 cut(s)	8, 90, 2716
BarI	GAAGNNNNNNTAC	2 cut(s)	172, 204
BauI	CACGAG	5 cut(s)	55, 851, 2565, 2687, 3083
Bbv12I	GWGCWC	3 cut(s)	8, 90, 1798
BbvCI	CCTCAGC	1 cut(s)	2549
BbvI	GCAGC	8 cut(s)	1636, 1680, 1921, 1977, 2023, 2306, 2452, 2497
BceAI	ACGGC	3 cut(s)	42, 424, 920
BcgI	CGANNNNNNTGC	8 cut(s)	626, 660, 1433, 1467, 2129, 2163, 2678, 2712
BciT130I	CCWGG	2 cut(s)	1499, 2065
BciVI	GTATCC	1 cut(s)	1825
BcoDI	GTCTC	6 cut(s)	589, 627, 638, 1075, 1341, 2625
BcuI	ACTAGT	1 cut(s)	1411
BfmI	CTRYAG	3 cut(s)	1960, 2188, 2573
BfoI	RGCGCY	1 cut(s)	1920
BfuAI	ACCTGC	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	1825
BisI	GCNGC	8 cut(s)	1650, 1694, 1935, 1966, 2037, 2320, 2441, 2511
BlsI	GCNGC	8 cut(s)	1651, 1695, 1936, 1967, 2038, 2321, 2442, 2512
BmcAI	AGTACT	1 cut(s)	537
Bme1390I	CCNGG	2 cut(s)	1499, 2065
Bme18I	GGWCC	1 cut(s)	614
BmeT110I	CYCGRG	3 cut(s)	1076, 1874, 2715
BmgT120I	GGNCC	2 cut(s)	614, 1046
BmiI	GGNNCC	6 cut(s)	279, 615, 1047, 1132, 2089, 2362
BmrFI	CCNGG	2 cut(s)	1499, 2065
BmsI	GCATC	6 cut(s)	547, 917, 988, 1354, 1946, 2535
BmtI	GCTAGC	1 cut(s)	1649
BoxI	GACNNNNGTC	2 cut(s)	44, 351
BpmI	CTGGAG	3 cut(s)	215, 1134, 1536
Bpu10I	CCTNAGC	1 cut(s)	2549
Bpu14I	TTCGAA	1 cut(s)	1770
BpuEI	CTTGAG	7 cut(s)	66, 434, 494, 937, 1316, 1323, 2991
BsaAI	YACGTR	2 cut(s)	2120, 2174
BsaBI	GATNNNNATC	1 cut(s)	1809
BsaHI	GRCGYC	1 cut(s)	1175
BsaI	GGTCTC	1 cut(s)	627
BsaJI	CCNNGG	9 cut(s)	211, 617, 2064, 2283, 2626, 2773, 2875, 2902, 3120
BsaWI	WCCGGW	2 cut(s)	1841, 2377
BsaXI	ACNNNNNCTCC	2 cut(s)	3215, 3245
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 680, 2245, 2399
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	5 cut(s)	42, 874, 1311, 1519, 2203
Bse3DI	GCAATG	5 cut(s)	237, 315, 1156, 1996, 3095
Bse8I	GATNNNNATC	1 cut(s)	1809
BseBI	CCWGG	2 cut(s)	1499, 2065
BseDI	CCNNGG	9 cut(s)	211, 617, 2064, 2283, 2626, 2773, 2875, 2902, 3120
BseGI	GGATG	9 cut(s)	322, 518, 1132, 1306, 1665, 2550, 2560, 2742, 3148
BseJI	GATNNNNATC	1 cut(s)	1809
BseLI	CCNNNNNNNGG	4 cut(s)	176, 680, 2245, 2399
BseMI	GCAATG	5 cut(s)	237, 315, 1156, 1996, 3095
BseMII	CTCAG	9 cut(s)	237, 273, 282, 638, 1895, 2306, 2540, 2772, 3164
BseNI	ACTGG	5 cut(s)	42, 874, 1311, 1519, 2203
BseRI	GAGGAG	2 cut(s)	2720, 3239
BseSI	GKGCMC	1 cut(s)	2024
BseXI	GCAGC	8 cut(s)	1636, 1680, 1921, 1977, 2023, 2306, 2452, 2497
BseYI	CCCAGC	1 cut(s)	1456
BsgI	GTGCAG	2 cut(s)	1364, 2639
Bsh1236I	CGCG	3 cut(s)	104, 1140, 3122
BshFI	GGCC	5 cut(s)	336, 340, 873, 1048, 1809
BsiHKAI	GWGCWC	3 cut(s)	8, 90, 1798
BsiHKCI	CYCGRG	3 cut(s)	1076, 1874, 2715
BsiSI	CCGG	3 cut(s)	337, 1842, 2378
BslFI	GGGAC	3 cut(s)	456, 1454, 1891
BslI	CCNNNNNNNGG	4 cut(s)	176, 680, 2245, 2399
BsmAI	GTCTC	6 cut(s)	589, 627, 638, 1075, 1341, 2625
BsmFI	GGGAC	3 cut(s)	456, 1454, 1891
BsmI	GAATGC	3 cut(s)	731, 1766, 2588
BsnI	GGCC	5 cut(s)	336, 340, 873, 1048, 1809
Bso31I	GGTCTC	1 cut(s)	627
BsoBI	CYCGRG	3 cut(s)	1076, 1874, 2715
Bsp119I	TTCGAA	1 cut(s)	1770
Bsp1286I	GDGCHC	5 cut(s)	8, 90, 1798, 2024, 2716
Bsp1407I	TGTACA	3 cut(s)	1371, 1384, 2535
Bsp19I	CCATGG	3 cut(s)	211, 617, 2902
Bsp68I	TCGCGA	1 cut(s)	104
BspANI	GGCC	5 cut(s)	336, 340, 873, 1048, 1809
BspCNI	CTCAG	9 cut(s)	238, 274, 283, 637, 1894, 2307, 2541, 2773, 3165
BspFNI	CGCG	3 cut(s)	104, 1140, 3122
BspHI	TCATGA	1 cut(s)	2655
BspLI	GGNNCC	6 cut(s)	279, 615, 1047, 1132, 2089, 2362
BspMAI	CTGCAG	2 cut(s)	2192, 2577
BspMI	ACCTGC	1 cut(s)	475
BspOI	GCTAGC	1 cut(s)	1649
BspPI	GGATC	8 cut(s)	118, 272, 285, 365, 1691, 2914, 2941, 3177
BspT104I	TTCGAA	1 cut(s)	1770
BspTNI	GGTCTC	1 cut(s)	627
BsrBI	CCGCTC	2 cut(s)	676, 2710
BsrDI	GCAATG	5 cut(s)	237, 315, 1156, 1996, 3095
BsrFI	RCCGGY	1 cut(s)	336
BsrGI	TGTACA	3 cut(s)	1371, 1384, 2535
BsrI	ACTGG	5 cut(s)	42, 874, 1311, 1519, 2203
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	9 cut(s)	211, 617, 2064, 2283, 2626, 2773, 2875, 2902, 3120
BssNI	GRCGYC	1 cut(s)	1175
BssSI	CACGAG	5 cut(s)	55, 851, 2565, 2687, 3083
BssT1I	CCWWGG	5 cut(s)	211, 617, 2283, 2875, 2902
Bst2BI	CACGAG	5 cut(s)	55, 851, 2565, 2687, 3083
Bst2UI	CCWGG	2 cut(s)	1499, 2065
Bst6I	CTCTTC	1 cut(s)	772
BstACI	GRCGYC	1 cut(s)	1175
BstAUI	TGTACA	3 cut(s)	1371, 1384, 2535
BstBAI	YACGTR	2 cut(s)	2120, 2174
BstBI	TTCGAA	1 cut(s)	1770
BstC8I	GCNNGC	6 cut(s)	338, 1452, 1495, 1647, 2142, 2712
BstDSI	CCRYGG	5 cut(s)	211, 617, 2626, 2902, 3120
BstEII	GGTNACC	2 cut(s)	812, 1390
BstF5I	GGATG	9 cut(s)	322, 518, 1132, 1306, 1665, 2550, 2560, 2742, 3148
BstFNI	CGCG	3 cut(s)	104, 1140, 3122
BstH2I	RGCGCY	1 cut(s)	1920
BstHHI	GCGC	2 cut(s)	223, 1919
BstMAI	GTCTC	6 cut(s)	589, 627, 638, 1075, 1341, 2625
BstMWI	GCNNNNNNNGC	5 cut(s)	737, 979, 1146, 2683, 3078
BstNI	CCWGG	2 cut(s)	1499, 2065
BstNSI	RCATGY	4 cut(s)	1454, 1577, 1928, 2144
BstPAI	GACNNNNGTC	2 cut(s)	44, 351
BstPI	GGTNACC	2 cut(s)	812, 1390
BstSCI	CCNGG	2 cut(s)	1497, 2063
BstSFI	CTRYAG	3 cut(s)	1960, 2188, 2573
BstSLI	GKGCMC	1 cut(s)	2024
BstSNI	TACGTA	1 cut(s)	2120
BstUI	CGCG	3 cut(s)	104, 1140, 3122
BstV1I	GCAGC	8 cut(s)	1636, 1680, 1921, 1977, 2023, 2306, 2452, 2497
BstX2I	RGATCY	6 cut(s)	123, 277, 1683, 2906, 2946, 3169
BstYI	RGATCY	6 cut(s)	123, 277, 1683, 2906, 2946, 3169
BsuI	GTATCC	1 cut(s)	1825
BsuRI	GGCC	5 cut(s)	336, 340, 873, 1048, 1809
BtgI	CCRYGG	5 cut(s)	211, 617, 2626, 2902, 3120
BtsCI	GGATG	9 cut(s)	322, 518, 1132, 1306, 1665, 2550, 2560, 2742, 3148
BtsI	GCAGTG	1 cut(s)	727
BtsIMutI	CAGTG	8 cut(s)	49, 727, 867, 1273, 1467, 2811, 2824, 3262
BtuMI	TCGCGA	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	6 cut(s)	338, 1452, 1495, 1647, 2142, 2712
CaiI	CAGNNNCTG	1 cut(s)	490
CciI	TCATGA	1 cut(s)	2655
CfoI	GCGC	2 cut(s)	223, 1919
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	614, 1046
Cfr42I	CCGCGG	1 cut(s)	3123
CseI	GACGC	1 cut(s)	1164
EaeI	YGGCCR	2 cut(s)	338, 1807
Eam1104I	CTCTTC	1 cut(s)	772
EarI	CTCTTC	1 cut(s)	772
EciI	GGCGGA	2 cut(s)	2888, 3087
Ecl136II	GAGCTC	2 cut(s)	6, 88
Eco105I	TACGTA	1 cut(s)	2120
Eco130I	CCWWGG	5 cut(s)	211, 617, 2283, 2875, 2902
Eco24I	GRGCYC	3 cut(s)	8, 90, 2716
Eco31I	GGTCTC	1 cut(s)	627
Eco32I	GATATC	3 cut(s)	496, 803, 1779
Eco47I	GGWCC	1 cut(s)	614
Eco53kI	GAGCTC	2 cut(s)	6, 88
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	3 cut(s)	1076, 1874, 2715
Eco91I	GGTNACC	2 cut(s)	812, 1390
EcoICRI	GAGCTC	2 cut(s)	6, 88
EcoO109I	RGGNCCY	1 cut(s)	1046
EcoO65I	GGTNACC	2 cut(s)	812, 1390
EcoRII	CCWGG	2 cut(s)	1497, 2063
EcoRV	GATATC	3 cut(s)	496, 803, 1779
EcoT14I	CCWWGG	5 cut(s)	211, 617, 2283, 2875, 2902
EcoT38I	GRGCYC	3 cut(s)	8, 90, 2716
ErhI	CCWWGG	5 cut(s)	211, 617, 2283, 2875, 2902
FalI	AAGNNNNNCTT	6 cut(s)	573, 605, 1710, 1742, 2061, 2093
FaqI	GGGAC	3 cut(s)	456, 1454, 1891
FauI	CCCGC	2 cut(s)	1431, 2703
FauNDI	CATATG	5 cut(s)	577, 772, 1012, 2016, 2368
FblI	GTMKAC	1 cut(s)	1056
Fnu4HI	GCNGC	8 cut(s)	1650, 1694, 1935, 1966, 2037, 2320, 2441, 2511
FokI	GGATG	9 cut(s)	329, 525, 1139, 1313, 1672, 2557, 2567, 2749, 3155
FriOI	GRGCYC	3 cut(s)	8, 90, 2716
FseI	GGCCGGCC	1 cut(s)	340
Fsp4HI	GCNGC	8 cut(s)	1650, 1694, 1935, 1966, 2037, 2320, 2441, 2511
GlaI	GCGC	2 cut(s)	222, 1918
GluI	GCNGC	8 cut(s)	1650, 1694, 1935, 1966, 2037, 2320, 2441, 2511
GsaI	CCCAGC	1 cut(s)	1460
GsuI	CTGGAG	3 cut(s)	215, 1134, 1536
HaeII	RGCGCY	1 cut(s)	1920
HaeIII	GGCC	5 cut(s)	336, 340, 873, 1048, 1809
HapII	CCGG	3 cut(s)	337, 1842, 2378
HgaI	GACGC	1 cut(s)	1164
HhaI	GCGC	2 cut(s)	223, 1919
Hin1I	GRCGYC	1 cut(s)	1175
Hin6I	GCGC	2 cut(s)	221, 1917
HinP1I	GCGC	2 cut(s)	221, 1917
HincII	GTYRAC	4 cut(s)	1057, 1072, 2274, 2802
HindII	GTYRAC	4 cut(s)	1057, 1072, 2274, 2802
HindIII	AAGCTT	2 cut(s)	456, 2108
HpaI	GTTAAC	1 cut(s)	2802
HpaII	CCGG	3 cut(s)	337, 1842, 2378
Hpy166II	GTNNAC	9 cut(s)	1057, 1072, 1372, 1665, 2075, 2274, 2570, 2802, 2890
Hpy8I	GTNNAC	9 cut(s)	1057, 1072, 1372, 1665, 2075, 2274, 2570, 2802, 2890
Hpy99I	CGWCG	1 cut(s)	2151
HpyAV	CCTTC	7 cut(s)	765, 1246, 1766, 2063, 2397, 2687, 2816
HpyCH4IV	ACGT	5 cut(s)	18, 165, 1349, 2119, 2173
HpyF10VI	GCNNNNNNNGC	5 cut(s)	737, 979, 1146, 2683, 3078
HpySE526I	ACGT	5 cut(s)	18, 165, 1349, 2119, 2173
Hsp92I	GRCGYC	1 cut(s)	1175
HspAI	GCGC	2 cut(s)	221, 1917
KroI	GCCGGC	1 cut(s)	336
KroNI	GCCGGC	1 cut(s)	338
KspAI	GTTAAC	1 cut(s)	2802
KspI	CCGCGG	1 cut(s)	3123
LmnI	GCTCC	4 cut(s)	1115, 2164, 2468, 2707
Lsp1109I	GCAGC	8 cut(s)	1636, 1680, 1921, 1977, 2023, 2306, 2452, 2497
LweI	GCATC	6 cut(s)	547, 917, 988, 1354, 1946, 2535
MaeII	ACGT	5 cut(s)	18, 165, 1349, 2119, 2173
MaeIII	GTNAC	8 cut(s)	22, 46, 812, 865, 1102, 1390, 1622, 3146
MbiI	CCGCTC	2 cut(s)	676, 2710
MfeI	CAATTG	4 cut(s)	708, 1224, 2058, 2700
MflI	RGATCY	6 cut(s)	123, 277, 1683, 2906, 2946, 3169
MhlI	GDGCHC	5 cut(s)	8, 90, 1798, 2024, 2716
MlsI	TGGCCA	1 cut(s)	1809
MluNI	TGGCCA	1 cut(s)	1809
MlyI	GAGTC	5 cut(s)	293, 387, 1699, 1873, 3075
MmeI	TCCRAC	4 cut(s)	141, 229, 2338, 2842
Mox20I	TGGCCA	1 cut(s)	1809
MroNI	GCCGGC	1 cut(s)	336
MroXI	GAANNNNTTC	4 cut(s)	1740, 2789, 2894, 3162
MscI	TGGCCA	1 cut(s)	1809
MslI	CAYNNNNRTG	2 cut(s)	402, 996
Msp20I	TGGCCA	1 cut(s)	1809
MspA1I	CMGCKG	3 cut(s)	1460, 2744, 3122
MspI	CCGG	3 cut(s)	337, 1842, 2378
MspR9I	CCNGG	2 cut(s)	1499, 2065
MunI	CAATTG	4 cut(s)	708, 1224, 2058, 2700
Mva1269I	GAATGC	3 cut(s)	731, 1766, 2588
MvaI	CCWGG	2 cut(s)	1499, 2065
MvnI	CGCG	3 cut(s)	104, 1140, 3122
MwoI	GCNNNNNNNGC	5 cut(s)	737, 979, 1146, 2683, 3078
NaeI	GCCGGC	1 cut(s)	338
NcoI	CCATGG	3 cut(s)	211, 617, 2902
NdeI	CATATG	5 cut(s)	577, 772, 1012, 2016, 2368
NgoMIV	GCCGGC	1 cut(s)	336
NheI	GCTAGC	1 cut(s)	1645
NlaIV	GGNNCC	6 cut(s)	279, 615, 1047, 1132, 2089, 2362
NmeAIII	GCCGAG	1 cut(s)	2476
NmuCI	GTSAC	5 cut(s)	46, 812, 865, 1622, 3146
NruI	TCGCGA	1 cut(s)	104
NspI	RCATGY	4 cut(s)	1454, 1577, 1928, 2144
NspV	TTCGAA	1 cut(s)	1770
PaeI	GCATGC	2 cut(s)	1454, 2144
PaeR7I	CTCGAG	1 cut(s)	1076
PagI	TCATGA	1 cut(s)	2655
PciI	ACATGT	1 cut(s)	1924
PcsI	WCGNNNNNNNCGW	1 cut(s)	917
PctI	GAATGC	3 cut(s)	731, 1766, 2588
PdiI	GCCGGC	1 cut(s)	338
PdmI	GAANNNNTTC	4 cut(s)	1740, 2789, 2894, 3162
PkrI	GCNGC	8 cut(s)	1651, 1695, 1936, 1967, 2038, 2321, 2442, 2512
PleI	GAGTC	5 cut(s)	292, 387, 1699, 1873, 3074
PpsI	GAGTC	5 cut(s)	292, 387, 1699, 1873, 3074
Ppu21I	YACGTR	2 cut(s)	2120, 2174
PscI	ACATGT	1 cut(s)	1924
PshAI	GACNNNNGTC	2 cut(s)	44, 351
PshBI	ATTAAT	2 cut(s)	386, 2517
PsiI	TTATAA	1 cut(s)	845
Psp124BI	GAGCTC	2 cut(s)	8, 90
Psp6I	CCWGG	2 cut(s)	1497, 2063
PspEI	GGTNACC	2 cut(s)	812, 1390
PspFI	CCCAGC	1 cut(s)	1456
PspGI	CCWGG	2 cut(s)	1497, 2063
PspN4I	GGNNCC	6 cut(s)	279, 615, 1047, 1132, 2089, 2362
PspPI	GGNCC	2 cut(s)	614, 1046
PstI	CTGCAG	2 cut(s)	2192, 2577
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	6 cut(s)	123, 277, 1683, 2906, 2946, 3169
PvuII	CAGCTG	1 cut(s)	1460
RigI	GGCCGGCC	1 cut(s)	340
RruI	TCGCGA	1 cut(s)	104
RseI	CAYNNNNRTG	2 cut(s)	402, 996
SacI	GAGCTC	2 cut(s)	8, 90
SacII	CCGCGG	1 cut(s)	3123
SalI	GTCGAC	1 cut(s)	1055
SatI	GCNGC	8 cut(s)	1650, 1694, 1935, 1966, 2037, 2320, 2441, 2511
Sau96I	GGNCC	2 cut(s)	614, 1046
ScaI	AGTACT	1 cut(s)	537
SchI	GAGTC	5 cut(s)	293, 387, 1699, 1873, 3075
ScrFI	CCNGG	2 cut(s)	1499, 2065
SduI	GDGCHC	5 cut(s)	8, 90, 1798, 2024, 2716
SfaNI	GCATC	6 cut(s)	547, 917, 988, 1354, 1946, 2535
SfcI	CTRYAG	3 cut(s)	1960, 2188, 2573
Sfr274I	CTCGAG	1 cut(s)	1076
Sfr303I	CCGCGG	1 cut(s)	3123
SfuI	TTCGAA	1 cut(s)	1770
SgrBI	CCGCGG	1 cut(s)	3123
SinI	GGWCC	1 cut(s)	614
SlaI	CTCGAG	1 cut(s)	1076
SmiMI	CAYNNNNRTG	2 cut(s)	402, 996
SmlI	CTYRAG	8 cut(s)	81, 449, 473, 952, 1076, 1295, 1338, 3006
SmoI	CTYRAG	8 cut(s)	81, 449, 473, 952, 1076, 1295, 1338, 3006
SnaBI	TACGTA	1 cut(s)	2120
SpeI	ACTAGT	1 cut(s)	1411
SphI	GCATGC	2 cut(s)	1454, 2144
SstI	GAGCTC	2 cut(s)	8, 90
StyD4I	CCNGG	2 cut(s)	1497, 2063
StyI	CCWWGG	5 cut(s)	211, 617, 2283, 2875, 2902
TaiI	ACGT	5 cut(s)	21, 168, 1352, 2122, 2176
TatI	WGTACW	5 cut(s)	110, 535, 1371, 1384, 2535
TscAI	CASTG	7 cut(s)	49, 727, 874, 1273, 1474, 2811, 2824
TseFI	GTSAC	5 cut(s)	46, 812, 865, 1622, 3146
TseI	GCWGC	8 cut(s)	1649, 1693, 1934, 1965, 2036, 2319, 2440, 2510
Tsp45I	GTSAC	5 cut(s)	46, 812, 865, 1622, 3146
TspGWI	ACGGA	3 cut(s)	1577, 2228, 2610
TspRI	CASTG	7 cut(s)	49, 727, 874, 1273, 1474, 2811, 2824
VpaK11BI	GGWCC	1 cut(s)	614
VspI	ATTAAT	2 cut(s)	386, 2517
XapI	RAATTY	6 cut(s)	257, 1399, 2151, 2209, 2882, 3133
XbaI	TCTAGA	2 cut(s)	797, 1537
XceI	RCATGY	4 cut(s)	1454, 1577, 1928, 2144
XhoI	CTCGAG	1 cut(s)	1076
XmiI	GTMKAC	1 cut(s)	1056
XmnI	GAANNNNTTC	4 cut(s)	1740, 2789, 2894, 3162
ZrmI	AGTACT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.