Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009295

Physical Location & Seq

Genomic Coordinates Reverse (-)

22942843 .. 22951326

Gene Structure 8484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1109600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3270 bp

ATGAGCGTATGGAACTACGTCGTAACGGCTCACAAGCCCACCAACGTCACCCACTCCTGCGTCGGCAACTTCACCGCCCCTCAGGAGCTCAATCTCATCACTGCGAAATGTACGCGAATTGAAATTCAGCTACTTACTCCTCTGGGACTGCAGCCTATCTTGGATGTCCCGATATATGGAAGAATAGCGACGCTTGAACTTTTCCGGCCTCATGGTGAAACACAGGATTTTCTATTTATTGCAACAGAAAGGTACAAATTTTGTGTTCTTCAGTGGGATGCCGAAGCATCTGAGCTCATCACAAGGGCAATGGGGGATGTCTCAGATCGCATAGGTCGTCCGACAGACAATGGTCAAATTGGTATTATTGATCCAGATTGCAGATTAATTGGACTCCATTTGTATGATGGATTGTTTAAGGTTATTCCTTTTGATAATAAAGGGCAGCTCAAGGAAGCATTTAATATACGGCTTGAGGAACTTCAAGTTTTGGATATCAAGTTTCTATATGGTTGTTCAAAACCAACAATTGTAGTTCTATATCAGGATAACAAAGATGTTCGCCATGTCAAAACATATGAGGTTTCTCTGAAGGATAAGGATTTCGTTGAAGGCCCTTGGGCACAGAACAACGTTGAAAATGGGGCTGATTTGTTAATACCAGTTCCTCCGCCACTCTGCGGTGTTCTTATTATTGGAGAAGATAATATTGTTTACCGCAGCCCGAATACATTTAAAGCAATCCCAATAAGACATTCCATCACAAGAGCCTATGGGAGAGTAGATGCAGATGGTTCCAGGTATTTACTTGGTGATCATGCCGGGCAACTTCACCTACTTGTTATAACGCATGAGAAAGAAAAGGTGTCTGGACTGAAAATTGAGCTCTTGGGGGAGACATCAATTGCATCTACTATCTCATACCTTGATAATGCATTTGTCTATATCGGATCAAGTTATGGGGATTCACAGCTTGTAAAGCTAAATCTACAGCCTGATGCAAAGGGTTCATATGTGGAAGTCTTAGAAAGGTATGTCAATTTGGGGCCGATCGTTGACTTTTGTGTGGTTGATCTTGAGAGGCAAGGCCAAGGTCAGGTTGTAACTTGTTCTGGAGCTTTCAAGGATGGTTCTCTTCGTGTAGTTCGGAACGGAATTGGAATCAATGAACAGGCATCAGTTGAGCTTCAAGGTATCAAGGGAATGTGGTCGTTAAGATCCTCCACTGATGATCCTTTTGACACCTTCCTGGTTGTAAGCTTTATCAGTGAGACAAGGATTTTGGCAATGAATCTTGAGGATGAGCTGGAAGAAACTGAGATAGAAGGCTTCTGTTCTCAAGTACAGACTTTATTTTGCCACGATGCTGTCTGTAATCAACTGGTACAGGTCACTTCAAGCTCTGTACGGCTAGTCAGTTCTACAACTAGGGAGCTCAAGCATGAGTGGAATGCTCCAGCAGGCAATTCGATTAATGTTGCCACTGCTAATGCCACCCAGGTCTTATTGGCGACTGGTGGAAAGCATTTAGTTTATTTGGAAATAGGTGATGGGGTATTGACAGAGAAAAACCACGCACAGTTAGATTTTGAGATATCATGCCTTGACATAAACCCCATAGGTGACAATCCCAACTATAGCCAGCTGGCAGCTGTTGGAATGTGGACAGATATTAGTGTCCAGATATATTCACTTCCTGCCCTGAGCCGCATCACAAAGGAACATTTGGGAGGGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGATATCCTACCTATTGTGTGCCCTTGGAGATGGGCACCTCTTAAACTTTATATTGAACACAAGCACTGGTGAGTTGACGGACAGGAAAAAAGTCTCACTTGGGACGCAGCCCATTACACTCCGTACCTTCTCATCCAAGAGTACTACGCATGTATTTGCTGCATCGGATAGGCCAACTGTCATCTATAGTAGCAACAAAAAATTGCTTTACAGCAATGTAAATCTGAAAGAAGTCAGCCATATGTGCCCATTCAACTCTGCTGCTTTTCCAGACAGCCTTGCAATTGCTAAGGAAGGTGAACTTACTATCGGCACTATTGATGACATCCAGAAGCTTCATATTCGCTCTATTCCCCTAGGTGAGCATGCGCGTCGTATCTGTCATCAGGAGCAGTCCAGGACTTTCGCCATTTTGAGTGTGAAATATAACCAGTCTAGTGCAGAAGACTCAGAAACACACTTCATCCGGTTGTTAGATGACCAGAGTTTTGACCTCATAACATATTATCAACTGGACGCTTTTGAGTATGCCTGCTCTATACTAAGCTGTTCTTTCTCAGATGACAGTAATTTATATTACTGTGTCGGGACTGCATATGTTCTCCCGGAAGAAAATGAGCCAACCAAGGGCCGCATTCTGGTTTTCATTGTTGAAGATGGGAAGCTGCAGCTCGTTGCTGAGAAGGAAACCAAGGGGTCTGTTTACTCGTTGAATGCGTTCAATGGCAAGCTACTTGCTGCTATTAATCAAAAGATACAGTTATACAAGTGGACTCTGCGGGATGATGGTACTCGTGAATTGCAATCGGAATGTGGACATCATGGCCACATACTTGCCCTTTATGTCCAGACTCGTGGAGACTTCATTATTGTTGGGGATTTAATGAAGTCAATCTCTCTGTTAATGTACAAGCATGAGGAAGGTGCCATTGAGGAGCGAGCCCGTGATTATAATGCAAATTGGATGTCTGCTGTAGAGATCCTCGACGATGATGTTTACATTGGAGCTGAAAATTTCGTCAACCTGTTCACTGTTCGTAAAAATAGTGAGGGTGCAACTGATGAGGAACGGGGCCGCCTTGAGGTTGTAGGTGAGTATCACCTAGGCGAGTTTGTCAATAGGTTCCGGCACGGCTCTCTTGTCATGCGGTTGCCAGACTCTGACGTGGGCCAGATTCCAACTGTCATCTTTGGCACCGTCAATGGTGTAATTGGAGTAATTGCCTCACTTCCTCAAGAACATTATGCATTTTTGGAGAAGCTCCAGTCAAACTTGAGGAAGGTGATAAAGGGTGTTGGAGGGTTGAACCATGAGCAGTGGAGATCATTCAGCAACGAGAAGAAAACTGTAGACGCCAAAAATTTCTTGGATGGCGATCTGATAGAATCGTTCCTTGATCTCAACCGTAGCAAGATGGACGAGATCTCAAAACAAATGCGCGTTTCAGTGGAGGAGCTCTGCAAGAGAGTAGAAGAATTGACAAGGCTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 ko05161 ko05203 map03420 map04120 map05161 map05203

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1090

Amino Acids

121.52

Weight (kDa)

5.24

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	16 - 344	1.6e-77	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	389 - 698	1.8e-67	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	745 - 1058	5.5e-82	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05420 AT4G05420 AT4G21100
fragaria_vesca	FvH4_3g09700 FvH4_3g09700
malus_domestica	MD00G1109600.v1.1 MD05G1276000.v1.1
prunus_persica	Prupe.4G088300_v2.0.a1 Prupe.4G088300_v2.0.a1
pyrus_communis	pycom05g25700 pycom10g21110
rosa_chinensis	RchiOBHm_Chr5g0015371
rosa_laevigata	RLG00000032196
rosa_multiflora	Rmu_sc0017755.1_g000009 Rmu_ssc0000085.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061090
rosa_rugosa	Rorug05G0026900
rosa_samantha	Rh5AG120500 Rh5BG119300 Rh5CG129900 Rh5DG118500
rosa_wichuraiana	Rw5G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	845, 2727
AccB1I	GGYRCC	3 cut(s)	1809, 2699, 2969
AccI	GTMKAC	1 cut(s)	3126
AccII	CGCG	3 cut(s)	115, 2146, 3216
AciI	CCGC	9 cut(s)	75, 671, 681, 718, 1708, 2407, 2554, 2851, 2923
AclI	AACGTT	1 cut(s)	633
AclWI	GGATC	5 cut(s)	365, 958, 1212, 1226, 2749
AcoI	YGGCCR	1 cut(s)	2599
AcsI	RAATTY	4 cut(s)	123, 257, 2788, 3136
AcuI	CTGAAG	2 cut(s)	254, 611
AcyI	GRCGYC	1 cut(s)	3129
AfaI	GTAC	9 cut(s)	112, 254, 1344, 1386, 1407, 1900, 1918, 2566, 2684
AfiI	CCNNNNNNNGG	7 cut(s)	176, 680, 1096, 1773, 2402, 2413, 2857
AjiI	CACGTC	1 cut(s)	2941
AjnI	CCWGG	4 cut(s)	797, 1248, 1497, 2171
AjuI	GAANNNNNNNTTGG	2 cut(s)	739, 771
Alw21I	GWGCWC	5 cut(s)	90, 297, 888, 1437, 3234
Alw26I	GTCTC	5 cut(s)	325, 890, 1265, 1873, 2628
AlwI	GGATC	5 cut(s)	365, 958, 1212, 1226, 2749
AlwNI	CAGNNNCTG	1 cut(s)	2936
AoxI	GGCC	9 cut(s)	206, 613, 1046, 1087, 1946, 2404, 2599, 2848, 2944
ApoI	RAATTY	4 cut(s)	123, 257, 2788, 3136
ArsI	GACNNNNNNTTYG	6 cut(s)	1264, 1296, 2246, 2278, 2726, 2758
AseI	ATTAAT	3 cut(s)	386, 1473, 2520
Asp700I	GAANNNNTTC	1 cut(s)	2492
AspA2I	CCTAGG	2 cut(s)	2131, 2878
AspLEI	GCGC	2 cut(s)	2146, 3216
AspS9I	GGNCC	5 cut(s)	614, 1046, 2404, 2848, 2944
AsuC2I	CCSGG	2 cut(s)	823, 2381
AvrII	CCTAGG	2 cut(s)	2131, 2878
AxyI	CCTNAGG	1 cut(s)	81
BaeGI	GKGCMC	4 cut(s)	625, 1798, 1812, 2024
BalI	TGGCCA	1 cut(s)	2601
BanI	GGYRCC	3 cut(s)	1809, 2699, 2969
BanII	GRGCYC	6 cut(s)	90, 297, 888, 1437, 2719, 3234
BauI	CACGAG	2 cut(s)	2568, 2628
BbsI	GAAGAC	1 cut(s)	2226
Bbv12I	GWGCWC	5 cut(s)	90, 297, 888, 1437, 3234
BceAI	ACGGC	4 cut(s)	42, 485, 1424, 2923
BcgI	CGANNNNNNTGC	4 cut(s)	1449, 1483, 2129, 2163
BciT130I	CCWGG	4 cut(s)	799, 1250, 1499, 2173
BclI	TGATCA	1 cut(s)	814
BcnI	CCSGG	2 cut(s)	823, 2381
BcoDI	GTCTC	5 cut(s)	325, 890, 1265, 1873, 2628
BfaI	CTAG	5 cut(s)	1412, 1428, 2132, 2211, 2879
BfmI	CTRYAG	7 cut(s)	149, 989, 1636, 1960, 2441, 2748, 3123
BglII	AGATCT	1 cut(s)	3198
BlnI	CCTAGG	2 cut(s)	2131, 2878
BmcAI	AGTACT	1 cut(s)	1918
Bme1390I	CCNGG	6 cut(s)	799, 823, 1250, 1499, 2173, 2381
BmgBI	CACGTC	1 cut(s)	2941
BmgT120I	GGNCC	5 cut(s)	614, 1046, 2404, 2848, 2944
BmiI	GGNNCC	7 cut(s)	796, 1047, 1811, 2701, 2849, 2900, 2971
BmrFI	CCNGG	6 cut(s)	799, 823, 1250, 1499, 2173, 2381
BmsI	GCATC	9 cut(s)	268, 296, 775, 917, 988, 1184, 1354, 1719, 1946
BoxI	GACNNNNGTC	1 cut(s)	351
BpiI	GAAGAC	1 cut(s)	2226
BpmI	CTGGAG	3 cut(s)	1134, 1440, 3023
Bpu10I	CCTNAGC	2 cut(s)	1703, 2064
BpuEI	CTTGAG	9 cut(s)	434, 494, 1097, 1316, 1323, 1421, 2876, 2994, 3070
BpuMI	CCSGG	2 cut(s)	823, 2381
BsaBI	GATNNNNATC	1 cut(s)	3150
BsaHI	GRCGYC	1 cut(s)	3129
BsaJI	CCNNGG	8 cut(s)	617, 1090, 1497, 1798, 2131, 2400, 2466, 2878
BsaWI	WCCGGW	1 cut(s)	2241
Bsc4I	CCNNNNNNNGG	7 cut(s)	176, 680, 1096, 1773, 2402, 2413, 2857
Bse1I	ACTGG	7 cut(s)	662, 1386, 1519, 1846, 2206, 2292, 3040
Bse21I	CCTNAGG	1 cut(s)	81
Bse3DI	GCAATG	3 cut(s)	315, 1293, 1996
Bse8I	GATNNNNATC	1 cut(s)	3150
BseBI	CCWGG	4 cut(s)	799, 1250, 1499, 2173
BseDI	CCNNGG	8 cut(s)	617, 1090, 1497, 1798, 2131, 2400, 2466, 2878
BseJI	GATNNNNATC	1 cut(s)	3150
BseLI	CCNNNNNNNGG	7 cut(s)	176, 680, 1096, 1773, 2402, 2413, 2857
BseMI	GCAATG	3 cut(s)	315, 1293, 1996
BseMII	CTCAG	8 cut(s)	95, 282, 336, 1308, 1694, 2238, 2346, 2445
BseNI	ACTGG	7 cut(s)	662, 1386, 1519, 1846, 2206, 2292, 3040
BseRI	GAGGAG	3 cut(s)	129, 2723, 3242
BseSI	GKGCMC	4 cut(s)	625, 1798, 1812, 2024
BsgI	GTGCAG	1 cut(s)	2235
Bsh1236I	CGCG	3 cut(s)	115, 2146, 3216
Bsh1285I	CGRYCG	1 cut(s)	1053
BshFI	GGCC	9 cut(s)	208, 615, 1048, 1089, 1948, 2406, 2601, 2850, 2946
BshNI	GGYRCC	3 cut(s)	1809, 2699, 2969
BsiEI	CGRYCG	1 cut(s)	1053
BsiHKAI	GWGCWC	5 cut(s)	90, 297, 888, 1437, 3234
BsiSI	CCGG	5 cut(s)	205, 822, 2242, 2381, 2902
BslFI	GGGAC	4 cut(s)	152, 159, 1891, 2377
BslI	CCNNNNNNNGG	7 cut(s)	176, 680, 1096, 1773, 2402, 2413, 2857
BsmAI	GTCTC	5 cut(s)	325, 890, 1265, 1873, 2628
BsmFI	GGGAC	4 cut(s)	152, 159, 1891, 2377
BsmI	GAATGC	3 cut(s)	1456, 2409, 2494
BsnI	GGCC	9 cut(s)	208, 615, 1048, 1089, 1948, 2406, 2601, 2850, 2946
Bsp1407I	TGTACA	1 cut(s)	2682
BspACI	CCGC	9 cut(s)	75, 671, 681, 718, 1708, 2407, 2554, 2851, 2923
BspANI	GGCC	9 cut(s)	208, 615, 1048, 1089, 1948, 2406, 2601, 2850, 2946
BspCNI	CTCAG	8 cut(s)	94, 283, 335, 1309, 1695, 2237, 2345, 2446
BspFNI	CGCG	3 cut(s)	115, 2146, 3216
BspLI	GGNNCC	7 cut(s)	796, 1047, 1811, 2701, 2849, 2900, 2971
BspMAI	CTGCAG	2 cut(s)	153, 2445
BspPI	GGATC	5 cut(s)	365, 958, 1212, 1226, 2749
BspT107I	GGYRCC	3 cut(s)	1809, 2699, 2969
BsrDI	GCAATG	3 cut(s)	315, 1293, 1996
BsrGI	TGTACA	1 cut(s)	2682
BsrI	ACTGG	7 cut(s)	662, 1386, 1519, 1846, 2206, 2292, 3040
BssECI	CCNNGG	8 cut(s)	617, 1090, 1497, 1798, 2131, 2400, 2466, 2878
BssNI	GRCGYC	1 cut(s)	3129
BssSI	CACGAG	2 cut(s)	2568, 2628
BssT1I	CCWWGG	7 cut(s)	617, 1090, 1798, 2131, 2400, 2466, 2878
Bst2BI	CACGAG	2 cut(s)	2568, 2628
Bst2UI	CCWGG	4 cut(s)	799, 1250, 1499, 2173
Bst6I	CTCTTC	1 cut(s)	1140
BstACI	GRCGYC	1 cut(s)	3129
BstAUI	TGTACA	1 cut(s)	2682
BstC8I	GCNNGC	7 cut(s)	1462, 1643, 1647, 2142, 2308, 2504, 2715
BstFNI	CGCG	3 cut(s)	115, 2146, 3216
BstHHI	GCGC	2 cut(s)	2146, 3216
BstMAI	GTCTC	5 cut(s)	325, 890, 1265, 1873, 2628
BstMCI	CGRYCG	1 cut(s)	1053
BstMWI	GCNNNNNNNGC	2 cut(s)	979, 2019
BstNI	CCWGG	4 cut(s)	799, 1250, 1499, 2173
BstNSI	RCATGY	2 cut(s)	1928, 2144
BstPAI	GACNNNNGTC	1 cut(s)	351
BstSCI	CCNGG	6 cut(s)	797, 821, 1248, 1497, 2171, 2379
BstSFI	CTRYAG	7 cut(s)	149, 989, 1636, 1960, 2441, 2748, 3123
BstSLI	GKGCMC	4 cut(s)	625, 1798, 1812, 2024
BstUI	CGCG	3 cut(s)	115, 2146, 3216
BstV2I	GAAGAC	1 cut(s)	2226
BstX2I	RGATCY	3 cut(s)	1217, 2754, 3198
BstXI	CCANNNNNNTGG	1 cut(s)	2630
BstYI	RGATCY	3 cut(s)	1217, 2754, 3198
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	9 cut(s)	208, 615, 1048, 1089, 1948, 2406, 2601, 2850, 2946
BtrI	CACGTC	1 cut(s)	2941
BtsI	GCAGTG	3 cut(s)	99, 1482, 3098
BtsIMutI	CAGTG	9 cut(s)	99, 278, 1224, 1273, 1482, 1839, 2805, 3098, 3228
Cac8I	GCNNGC	7 cut(s)	1462, 1643, 1647, 2142, 2308, 2504, 2715
CaiI	CAGNNNCTG	1 cut(s)	2936
CfoI	GCGC	2 cut(s)	2146, 3216
Cfr13I	GGNCC	5 cut(s)	614, 1046, 2404, 2848, 2944
CseI	GACGC	6 cut(s)	49, 199, 1888, 2135, 2300, 3137
Csp6I	GTAC	9 cut(s)	111, 253, 1343, 1385, 1406, 1899, 1917, 2565, 2683
CviQI	GTAC	9 cut(s)	111, 253, 1343, 1385, 1406, 1899, 1917, 2565, 2683
DraI	TTTAAA	1 cut(s)	736
EaeI	YGGCCR	1 cut(s)	2599
Eam1104I	CTCTTC	1 cut(s)	1140
EarI	CTCTTC	1 cut(s)	1140
EciI	GGCGGA	1 cut(s)	660
Ecl136II	GAGCTC	5 cut(s)	88, 295, 886, 1435, 3232
Eco130I	CCWWGG	7 cut(s)	617, 1090, 1798, 2131, 2400, 2466, 2878
Eco24I	GRGCYC	6 cut(s)	90, 297, 888, 1437, 2719, 3234
Eco32I	GATATC	3 cut(s)	496, 1596, 1779
Eco53kI	GAGCTC	5 cut(s)	88, 295, 886, 1435, 3232
Eco57I	CTGAAG	2 cut(s)	254, 611
Eco81I	CCTNAGG	1 cut(s)	81
EcoICRI	GAGCTC	5 cut(s)	88, 295, 886, 1435, 3232
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRII	CCWGG	4 cut(s)	797, 1248, 1497, 2171
EcoRV	GATATC	3 cut(s)	496, 1596, 1779
EcoT14I	CCWWGG	7 cut(s)	617, 1090, 1798, 2131, 2400, 2466, 2878
EcoT22I	ATGCAT	2 cut(s)	937, 3025
EcoT38I	GRGCYC	6 cut(s)	90, 297, 888, 1437, 2719, 3234
ErhI	CCWWGG	7 cut(s)	617, 1090, 1798, 2131, 2400, 2466, 2878
FalI	AAGNNNNNCTT	6 cut(s)	1857, 1889, 2061, 2093, 2311, 2343
FaqI	GGGAC	4 cut(s)	152, 159, 1891, 2377
FauI	CCCGC	1 cut(s)	2547
FauNDI	CATATG	4 cut(s)	577, 1012, 2016, 2371
FbaI	TGATCA	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	3126
FriOI	GRGCYC	6 cut(s)	90, 297, 888, 1437, 2719, 3234
FspBI	CTAG	5 cut(s)	1412, 1428, 2132, 2211, 2879
GlaI	GCGC	2 cut(s)	2145, 3215
GsuI	CTGGAG	3 cut(s)	1134, 1440, 3023
HaeIII	GGCC	9 cut(s)	208, 615, 1048, 1089, 1948, 2406, 2601, 2850, 2946
HapII	CCGG	5 cut(s)	205, 822, 2242, 2381, 2902
HgaI	GACGC	6 cut(s)	49, 199, 1888, 2135, 2300, 3137
HhaI	GCGC	2 cut(s)	2146, 3216
Hin1I	GRCGYC	1 cut(s)	3129
Hin6I	GCGC	2 cut(s)	2144, 3214
HinP1I	GCGC	2 cut(s)	2144, 3214
HincII	GTYRAC	3 cut(s)	1057, 1851, 2797
HindII	GTYRAC	3 cut(s)	1057, 1851, 2797
HindIII	AAGCTT	2 cut(s)	1258, 2108
HpaII	CCGG	5 cut(s)	205, 822, 2242, 2381, 2902
Hpy99I	CGWCG	5 cut(s)	23, 65, 193, 2151, 2765
HpyCH4IV	ACGT	4 cut(s)	18, 45, 633, 2940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	979, 2019
HpySE526I	ACGT	4 cut(s)	18, 45, 633, 2940
Hsp92I	GRCGYC	1 cut(s)	3129
HspAI	GCGC	2 cut(s)	2144, 3214
Ksp22I	TGATCA	1 cut(s)	814
LmnI	GCTCC	9 cut(s)	85, 1115, 1432, 1459, 2164, 2710, 2780, 3042, 3229
LweI	GCATC	9 cut(s)	268, 296, 775, 917, 988, 1184, 1354, 1719, 1946
MaeI	CTAG	5 cut(s)	1412, 1428, 2132, 2211, 2879
MaeII	ACGT	4 cut(s)	18, 45, 633, 2940
MaeIII	GTNAC	5 cut(s)	22, 46, 1102, 1390, 1622
MfeI	CAATTG	3 cut(s)	528, 903, 2058
MflI	RGATCY	3 cut(s)	1217, 2754, 3198
MlsI	TGGCCA	1 cut(s)	2601
MluNI	TGGCCA	1 cut(s)	2601
MlyI	GAGTC	5 cut(s)	387, 2216, 2542, 2620, 2927
MmeI	TCCRAC	4 cut(s)	365, 1636, 2978, 3052
Mox20I	TGGCCA	1 cut(s)	2601
Mph1103I	ATGCAT	2 cut(s)	937, 3025
MroXI	GAANNNNTTC	1 cut(s)	2492
MscI	TGGCCA	1 cut(s)	2601
MslI	CAYNNNNRTG	1 cut(s)	402
Msp20I	TGGCCA	1 cut(s)	2601
MspA1I	CMGCKG	2 cut(s)	1645, 1652
MspI	CCGG	5 cut(s)	205, 822, 2242, 2381, 2902
MspR9I	CCNGG	6 cut(s)	799, 823, 1250, 1499, 2173, 2381
MunI	CAATTG	3 cut(s)	528, 903, 2058
Mva1269I	GAATGC	3 cut(s)	1456, 2409, 2494
MvaI	CCWGG	4 cut(s)	799, 1250, 1499, 2173
MvnI	CGCG	3 cut(s)	115, 2146, 3216
MwoI	GCNNNNNNNGC	2 cut(s)	979, 2019
NciI	CCSGG	2 cut(s)	823, 2381
NdeI	CATATG	4 cut(s)	577, 1012, 2016, 2371
NlaIV	GGNNCC	7 cut(s)	796, 1047, 1811, 2701, 2849, 2900, 2971
NmuCI	GTSAC	3 cut(s)	46, 1390, 1622
NsiI	ATGCAT	2 cut(s)	937, 3025
NspI	RCATGY	2 cut(s)	1928, 2144
PaeI	GCATGC	1 cut(s)	2144
PcsI	WCGNNNNNNNCGW	2 cut(s)	334, 2489
PctI	GAATGC	3 cut(s)	1456, 2409, 2494
PdmI	GAANNNNTTC	1 cut(s)	2492
PfeI	GAWTC	5 cut(s)	965, 1161, 1291, 2950, 3161
PfoI	TCCNGGA	2 cut(s)	2171, 2379
Ple19I	CGATCG	1 cut(s)	1053
PleI	GAGTC	5 cut(s)	387, 2216, 2542, 2620, 2927
PpsI	GAGTC	5 cut(s)	387, 2216, 2542, 2620, 2927
PshAI	GACNNNNGTC	1 cut(s)	351
PshBI	ATTAAT	3 cut(s)	386, 1473, 2520
PsiI	TTATAA	2 cut(s)	845, 2727
Psp124BI	GAGCTC	5 cut(s)	90, 297, 888, 1437, 3234
Psp1406I	AACGTT	1 cut(s)	633
Psp6I	CCWGG	4 cut(s)	797, 1248, 1497, 2171
PspGI	CCWGG	4 cut(s)	797, 1248, 1497, 2171
PspN4I	GGNNCC	7 cut(s)	796, 1047, 1811, 2701, 2849, 2900, 2971
PspPI	GGNCC	5 cut(s)	614, 1046, 2404, 2848, 2944
PstI	CTGCAG	2 cut(s)	153, 2445
PstNI	CAGNNNCTG	1 cut(s)	2936
PsuI	RGATCY	3 cut(s)	1217, 2754, 3198
PvuI	CGATCG	1 cut(s)	1053
PvuII	CAGCTG	2 cut(s)	1645, 1652
RsaI	GTAC	9 cut(s)	112, 254, 1344, 1386, 1407, 1900, 1918, 2566, 2684
RsaNI	GTAC	9 cut(s)	111, 253, 1343, 1385, 1406, 1899, 1917, 2565, 2683
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	5 cut(s)	90, 297, 888, 1437, 3234
Sau96I	GGNCC	5 cut(s)	614, 1046, 2404, 2848, 2944
ScaI	AGTACT	1 cut(s)	1918
SchI	GAGTC	5 cut(s)	387, 2216, 2542, 2620, 2927
ScrFI	CCNGG	6 cut(s)	799, 823, 1250, 1499, 2173, 2381
SfaNI	GCATC	9 cut(s)	268, 296, 775, 917, 988, 1184, 1354, 1719, 1946
SfcI	CTRYAG	7 cut(s)	149, 989, 1636, 1960, 2441, 2748, 3123
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	9 cut(s)	449, 473, 1076, 1295, 1338, 1436, 2855, 3009, 3049
SmoI	CTYRAG	9 cut(s)	449, 473, 1076, 1295, 1338, 1436, 2855, 3009, 3049
SphI	GCATGC	1 cut(s)	2144
SsiI	CCGC	9 cut(s)	75, 671, 681, 718, 1708, 2407, 2554, 2851, 2923
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	5 cut(s)	1412, 1428, 2132, 2211, 2879
SstI	GAGCTC	5 cut(s)	90, 297, 888, 1437, 3234
StyD4I	CCNGG	6 cut(s)	797, 821, 1248, 1497, 2171, 2379
StyI	CCWWGG	7 cut(s)	617, 1090, 1798, 2131, 2400, 2466, 2878
TaiI	ACGT	4 cut(s)	21, 48, 636, 2943
TaqI	TCGA	2 cut(s)	1469, 2760
TatI	WGTACW	3 cut(s)	1342, 1916, 2682
TauI	GCSGC	3 cut(s)	1710, 2409, 2853
TfiI	GAWTC	5 cut(s)	965, 1161, 1291, 2950, 3161
TscAI	CASTG	9 cut(s)	106, 278, 1231, 1273, 1489, 1846, 2812, 3098, 3228
TseFI	GTSAC	3 cut(s)	46, 1390, 1622
Tsp45I	GTSAC	3 cut(s)	46, 1390, 1622
TspDTI	ATGAA	8 cut(s)	999, 1182, 1304, 2102, 2227, 2410, 2629, 2675
TspGWI	ACGGA	3 cut(s)	1167, 1868, 1886
TspRI	CASTG	9 cut(s)	106, 278, 1231, 1273, 1489, 1846, 2812, 3098, 3228
VspI	ATTAAT	3 cut(s)	386, 1473, 2520
XapI	RAATTY	4 cut(s)	123, 257, 2788, 3136
XceI	RCATGY	2 cut(s)	1928, 2144
XcmI	CCANNNNNNNNNTGG	2 cut(s)	404, 3139
XmaJI	CCTAGG	2 cut(s)	2131, 2878
XmiI	GTMKAC	1 cut(s)	3126
XmnI	GAANNNNTTC	1 cut(s)	2492
XspI	CTAG	5 cut(s)	1412, 1428, 2132, 2211, 2879
ZrmI	AGTACT	1 cut(s)	1918
Zsp2I	ATGCAT	2 cut(s)	937, 3025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.