Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009295

Physical Location & Seq

Genomic Coordinates Reverse (-)

27052061 .. 27055069

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTGGTCGTTAAGATCCTCCACTGATGATCCTTATGACACCTTCCTGGTTGTAAGCTTTATCAGTGAGACAAGGATTTTGGCAATGAATATTGAGGATGAGTTGGAAGAAACTGAGATAGAAGGCTTCTGTTCTCAAGTACAGACTTTGTTTTGCCATGATGCTGTCTGTAATCAACTGGTGCAGGTAACTTCAAGCTCTGTAAGATTAGTCAGTTCTACAACTAGGGAGCTCAAGCATGAGTGGAATGCTCCAGCAGGCTATTCAATTAATGTTGCCACTGCTAATGCCACCCAGGTTTTATTGGCGACTGGTGGAAAGCACTTAGTTTATTTGGAAATTGGTGATGGGATATTGACAGAGAAAAACCACGCACAGTTAGATTTTGAGATATCATGCCTTGACATAAACCCTATAGGCGACAATCCCAACTATAGCCAGCTGGCAGCTGTTGGAATGTGGACAGATATTAGTGTCCAGATATATTCACTTCCTGACCTGAACCGCATCACAAAGGAACATTTGGGAGGGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGATATCCTACCTATTGTGTGCCCTAGGAGATGGGCACCTCTTAAACTTTATATTGAACACAAGCACTGGTGAGTTGACGGACAGGAAAAAAGTCTCTCTTGGGACACAGCCCATTACACTCCGTACCTTCTCATCCAAGAGTACTACGCATGTATTTGCTGCATCGGATAGGCCAACTGTCATATATAGTAGCAACAAGAAACTGCTTTACAGCAACGTAAATCTGAAAGAAGTCAGCCATATGTGCCCATTCAACTCTGCTGCTTTTCCAGATAGCCTTGCAATTGCTAAGGAAGGTGAACTTACTATTGGCACAATTGATGACATCCAGAAGCTTCATATTCGCTCTATTCCCCTAGGTGAGCATGCACGTCGTATCTGTCATCAGGAGCAGTCCAGGACTTTCGCCATTTTGAGTGTGAAATATAACCAGTCTAGTGCAGAAGACTCAGAAACACACTTCATCCTATTGTTAGATCGATCAGAGTTTCGACCTCGTAACATATTATCAACTGGACGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 ko05161 ko05203 map03420 map04120 map05161 map05203

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

366

Amino Acids

40.54

Weight (kDa)

5.38

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05420 AT4G05420 AT4G21100
fragaria_vesca	FvH4_3g09700 FvH4_3g09700
malus_domestica	MD00G1109600.v1.1 MD05G1276000.v1.1
prunus_persica	Prupe.4G088300_v2.0.a1 Prupe.4G088300_v2.0.a1
pyrus_communis	pycom05g25700 pycom10g21110
rosa_chinensis	RchiOBHm_Chr5g0015371
rosa_laevigata	RLG00000032196
rosa_multiflora	Rmu_sc0017755.1_g000009 Rmu_ssc0000085.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061090
rosa_rugosa	Rorug05G0026900
rosa_samantha	Rh5AG120500 Rh5BG119300 Rh5CG129900 Rh5DG118500
rosa_wichuraiana	Rw5G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	606
AciI	CCGC	1 cut(s)	505
AclWI	GGATC	2 cut(s)	9, 23
AfaI	GTAC	3 cut(s)	141, 697, 715
AfiI	CCNNNNNNNGG	1 cut(s)	570
AgsI	TTSAA	5 cut(s)	195, 267, 569, 628, 826
AjiI	CACGTC	1 cut(s)	944
AjnI	CCWGG	3 cut(s)	45, 294, 968
AjuI	GAANNNNNNNTTGG	2 cut(s)	864, 896
AluBI	AGCT	6 cut(s)	57, 198, 232, 442, 449, 907
AluI	AGCT	6 cut(s)	57, 198, 232, 442, 449, 907
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	62, 670
AlwI	GGATC	2 cut(s)	9, 23
AoxI	GGCC	1 cut(s)	743
ApeKI	GCWGC	3 cut(s)	446, 731, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AseI	ATTAAT	1 cut(s)	270
AspA2I	CCTAGG	2 cut(s)	595, 928
AsuHPI	GGTGA	4 cut(s)	356, 653, 881, 944
AvrII	CCTAGG	2 cut(s)	595, 928
BaeGI	GKGCMC	3 cut(s)	595, 609, 821
BanI	GGYRCC	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	1023
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	458, 718, 820
BccI	CCATC	2 cut(s)	341, 596
BcgI	CGANNNNNNTGC	2 cut(s)	926, 960
BciT130I	CCWGG	3 cut(s)	47, 296, 970
BcoDI	GTCTC	2 cut(s)	62, 670
BfaI	CTAG	4 cut(s)	225, 596, 929, 1008
BfmI	CTRYAG	2 cut(s)	414, 433
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	3 cut(s)	447, 732, 834
BlnI	CCTAGG	2 cut(s)	595, 928
BlsI	GCNGC	3 cut(s)	448, 733, 835
BmcAI	AGTACT	1 cut(s)	715
Bme1390I	CCNGG	3 cut(s)	47, 296, 970
BmgBI	CACGTC	1 cut(s)	944
BmiI	GGNNCC	1 cut(s)	608
BmrFI	CCNGG	3 cut(s)	47, 296, 970
BmsI	GCATC	3 cut(s)	151, 516, 743
BpiI	GAAGAC	1 cut(s)	1023
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	2 cut(s)	120, 218
Bsa29I	ATCGAT	1 cut(s)	1051
BsaJI	CCNNGG	3 cut(s)	294, 595, 928
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse1I	ACTGG	5 cut(s)	183, 316, 643, 1003, 1090
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	3 cut(s)	47, 296, 970
BseCI	ATCGAT	1 cut(s)	1051
BseDI	CCNNGG	3 cut(s)	294, 595, 928
BseGI	GGATG	4 cut(s)	103, 704, 897, 1035
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	105, 1035
BseNI	ACTGG	5 cut(s)	183, 316, 643, 1003, 1090
BseSI	GKGCMC	3 cut(s)	595, 609, 821
BseXI	GCAGC	3 cut(s)	458, 718, 820
BsgI	GTGCAG	2 cut(s)	203, 1032
BshFI	GGCC	1 cut(s)	745
BshNI	GGYRCC	1 cut(s)	606
BshVI	ATCGAT	1 cut(s)	1051
BsiHKAI	GWGCWC	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmAI	GTCTC	2 cut(s)	62, 670
BsmFI	GGGAC	1 cut(s)	688
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	745
Bsp1286I	GDGCHC	4 cut(s)	234, 595, 609, 821
Bsp143I	GATC	5 cut(s)	14, 28, 534, 1048, 1052
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	1 cut(s)	745
BspCNI	CTCAG	2 cut(s)	106, 1034
BspDI	ATCGAT	1 cut(s)	1051
BspLI	GGNNCC	1 cut(s)	608
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	9, 23
BspT107I	GGYRCC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	5 cut(s)	183, 316, 643, 1003, 1090
BssECI	CCNNGG	3 cut(s)	294, 595, 928
BssMI	GATC	5 cut(s)	14, 28, 534, 1048, 1052
BssT1I	CCWWGG	2 cut(s)	595, 928
Bst2UI	CCWGG	3 cut(s)	47, 296, 970
Bst4CI	ACNGT	2 cut(s)	378, 751
BstC8I	GCNNGC	4 cut(s)	259, 440, 444, 939
BstDEI	CTNAG	4 cut(s)	114, 325, 861, 1021
BstF5I	GGATG	4 cut(s)	103, 704, 897, 1035
BstKTI	GATC	5 cut(s)	17, 31, 537, 1051, 1055
BstMAI	GTCTC	2 cut(s)	62, 670
BstMBI	GATC	5 cut(s)	14, 28, 534, 1048, 1052
BstMWI	GCNNNNNNNGC	1 cut(s)	816
BstNI	CCWGG	3 cut(s)	47, 296, 970
BstNSI	RCATGY	2 cut(s)	725, 941
BstSCI	CCNGG	3 cut(s)	45, 294, 968
BstSFI	CTRYAG	2 cut(s)	414, 433
BstSLI	GKGCMC	3 cut(s)	595, 609, 821
BstV1I	GCAGC	3 cut(s)	458, 718, 820
BstV2I	GAAGAC	1 cut(s)	1023
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	1051
BsuRI	GGCC	1 cut(s)	745
BsuTUI	ATCGAT	1 cut(s)	1051
BtrI	CACGTC	1 cut(s)	944
BtsCI	GGATG	4 cut(s)	103, 704, 897, 1035
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	4 cut(s)	21, 70, 279, 636
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	4 cut(s)	259, 440, 444, 939
ClaI	ATCGAT	1 cut(s)	1051
Csp6I	GTAC	3 cut(s)	140, 696, 714
CviAII	CATG	5 cut(s)	158, 239, 396, 722, 938
CviQI	GTAC	3 cut(s)	140, 696, 714
DdeI	CTNAG	4 cut(s)	114, 325, 861, 1021
DpnI	GATC	5 cut(s)	16, 30, 536, 1050, 1054
DpnII	GATC	5 cut(s)	14, 28, 534, 1048, 1052
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	595, 928
Eco24I	GRGCYC	1 cut(s)	234
Eco32I	GATATC	2 cut(s)	393, 576
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	3 cut(s)	45, 294, 968
EcoRV	GATATC	2 cut(s)	393, 576
EcoT14I	CCWWGG	2 cut(s)	595, 928
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	595, 928
FaeI	CATG	5 cut(s)	161, 242, 399, 725, 941
FalI	AAGNNNNNCTT	4 cut(s)	654, 686, 858, 890
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	5 cut(s)	157, 238, 395, 721, 937
FauNDI	CATATG	1 cut(s)	813
Fnu4HI	GCNGC	3 cut(s)	447, 732, 834
FokI	GGATG	4 cut(s)	110, 691, 884, 1022
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	447, 732, 834
FspBI	CTAG	4 cut(s)	225, 596, 929, 1008
GluI	GCNGC	3 cut(s)	447, 732, 834
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	745
Hin1II	CATG	5 cut(s)	161, 242, 399, 725, 941
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HindIII	AAGCTT	2 cut(s)	55, 905
HinfI	GANTC	1 cut(s)	1019
HphI	GGTGA	4 cut(s)	356, 653, 881, 944
Hpy166II	GTNNAC	3 cut(s)	462, 648, 872
Hpy188I	TCNGA	4 cut(s)	739, 798, 1024, 1057
Hpy188III	TCNNGA	5 cut(s)	478, 494, 842, 901, 959
Hpy8I	GTNNAC	3 cut(s)	462, 648, 872
Hpy99I	CGWCG	1 cut(s)	948
HpyAV	CCTTC	5 cut(s)	52, 116, 563, 709, 860
HpyCH4III	ACNGT	2 cut(s)	378, 751
HpyCH4IV	ACGT	2 cut(s)	789, 943
HpyCH4V	TGCA	5 cut(s)	184, 734, 854, 941, 1013
HpyF10VI	GCNNNNNNNGC	1 cut(s)	816
HpyF3I	CTNAG	4 cut(s)	114, 325, 861, 1021
HpySE526I	ACGT	2 cut(s)	789, 943
Hsp92II	CATG	5 cut(s)	161, 242, 399, 725, 941
Kzo9I	GATC	5 cut(s)	14, 28, 534, 1048, 1052
LmnI	GCTCC	3 cut(s)	229, 256, 961
Lsp1109I	GCAGC	3 cut(s)	458, 718, 820
LweI	GCATC	3 cut(s)	151, 516, 743
MaeI	CTAG	4 cut(s)	225, 596, 929, 1008
MaeII	ACGT	2 cut(s)	789, 943
MaeIII	GTNAC	2 cut(s)	187, 1070
MalI	GATC	5 cut(s)	16, 30, 536, 1050, 1054
MboI	GATC	5 cut(s)	14, 28, 534, 1048, 1052
MboII	GAAGA	3 cut(s)	119, 545, 1028
MfeI	CAATTG	2 cut(s)	855, 888
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	4 cut(s)	234, 595, 609, 821
MluCI	AATT	4 cut(s)	267, 339, 855, 888
MlyI	GAGTC	1 cut(s)	1013
MmeI	TCCRAC	2 cut(s)	84, 433
MnlI	CCTC	6 cut(s)	28, 88, 521, 552, 620, 1077
MseI	TTAA	3 cut(s)	11, 270, 614
MspA1I	CMGCKG	2 cut(s)	442, 449
MspR9I	CCNGG	3 cut(s)	47, 296, 970
MunI	CAATTG	2 cut(s)	855, 888
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	3 cut(s)	47, 296, 970
MwoI	GCNNNNNNNGC	1 cut(s)	816
NdeI	CATATG	1 cut(s)	813
NdeII	GATC	5 cut(s)	14, 28, 534, 1048, 1052
NlaIII	CATG	5 cut(s)	161, 242, 399, 725, 941
NlaIV	GGNNCC	1 cut(s)	608
NspI	RCATGY	2 cut(s)	725, 941
PaeI	GCATGC	1 cut(s)	941
PctI	GAATGC	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	968
PkrI	GCNGC	3 cut(s)	448, 733, 835
PleI	GAGTC	1 cut(s)	1013
PpsI	GAGTC	1 cut(s)	1013
PshBI	ATTAAT	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	3 cut(s)	45, 294, 968
PspGI	CCWGG	3 cut(s)	45, 294, 968
PspN4I	GGNNCC	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	14
PvuII	CAGCTG	2 cut(s)	442, 449
RsaI	GTAC	3 cut(s)	141, 697, 715
RsaNI	GTAC	3 cut(s)	140, 696, 714
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	11, 270, 614
SatI	GCNGC	3 cut(s)	447, 732, 834
Sau3AI	GATC	5 cut(s)	14, 28, 534, 1048, 1052
ScaI	AGTACT	1 cut(s)	715
SchI	GAGTC	1 cut(s)	1013
ScrFI	CCNGG	3 cut(s)	47, 296, 970
SduI	GDGCHC	4 cut(s)	234, 595, 609, 821
SfaNI	GCATC	3 cut(s)	151, 516, 743
SfcI	CTRYAG	2 cut(s)	414, 433
SmlI	CTYRAG	2 cut(s)	135, 233
SmoI	CTYRAG	2 cut(s)	135, 233
SphI	GCATGC	1 cut(s)	941
Sse9I	AATT	4 cut(s)	267, 339, 855, 888
SsiI	CCGC	1 cut(s)	505
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	4 cut(s)	225, 596, 929, 1008
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	45, 294, 968
StyI	CCWWGG	2 cut(s)	595, 928
TaaI	ACNGT	2 cut(s)	378, 751
TaiI	ACGT	2 cut(s)	792, 946
TaqI	TCGA	2 cut(s)	1051, 1063
TasI	AATT	4 cut(s)	267, 339, 855, 888
TatI	WGTACW	2 cut(s)	139, 713
Tru1I	TTAA	3 cut(s)	11, 270, 614
Tru9I	TTAA	3 cut(s)	11, 270, 614
TscAI	CASTG	4 cut(s)	28, 70, 286, 643
TseI	GCWGC	3 cut(s)	446, 731, 833
TspDTI	ATGAA	3 cut(s)	101, 899, 1024
TspGWI	ACGGA	2 cut(s)	665, 683
TspRI	CASTG	4 cut(s)	28, 70, 286, 643
VspI	ATTAAT	1 cut(s)	270
XceI	RCATGY	2 cut(s)	725, 941
XmaJI	CCTAGG	2 cut(s)	595, 928
XspI	CTAG	4 cut(s)	225, 596, 929, 1008
ZrmI	AGTACT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.