Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009295

Physical Location & Seq

Genomic Coordinates Reverse (-)

10703479 .. 10712287

Gene Structure 8809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3270 bp

ATGAGCGTCTGGAACTACGTCGTCACGGCCCACAAGCCCACCAACGTCACCCATTCCTGCGTCGGCAATTTCACCGGCCCTCAGGAGCTCAATCTCATCACTGCGAAATGCACACGGATTGAAATTCTTCTACTTACTCCTCTGGGTTTGCAGCCTGTCTTGGATGTGCCGATATATGGACGAATTGCAACCCTTCAACTTTTTCGGCCACATGGTGAAGCCCAGGATTTTCTGTTTATTGCAACAGAAAGATACAAGTTTTGTGTCCTTCAGTGGGATGTTGAAACGCAGGAGCTTATTACCAAGGCAATGGGTGATGTCTCAGATCGTATAGGTCGTCCTACAGACAGCGGTCAGATTGGTATAATAGATCCAGATTGCAGATTAATTGGACTTCATTTGTATGATGGCTTGTTTAAGGTTATTCCTTTCGACAATAAAGGGCAGCTGAAGGAAGCATTTAACATTAGGCTTGAGGAACTTCAAGTTCTAGATATCAAGTTTCTTTATGGTTGTTCAAAACCCACAATTGTAGTTCTTTACCAGGATAACAAGGATGCCCGCCATGTCAAAACATATGAGGTTGCTCTGAAGGATAAAGATTTTGTCGAGGGTCCTTGGTCACAGAACAACCTTGACAATGGGGCTGAGTTGTTAATACCAGTTCCTCCACCACTATGCGGTGTTCTAATTATTGGAGAGGAAACAATTGTTTACTGCAGTGCCAATGCATTTAAAGCAATACCCATAAGACCGTCCATCACAAGAGCCTATGGAAGAGTGGATGCAGATGGTTCTAGGTATCTACTTGGTGATCATGCTGGGCTACTTCACCTGCTTGTTATAACCCATGAGAAAGAAAAGGTGACTGGACTCAAGATTGAGCTCTTGGGTGAAACATCGATTGCATCTACAATCTCTTATCTTGATAATGGATTCGTCTATATTGGATCAAGCTATGGGGACTCACAGCTTGTAAAGCTGACTATAAATCCAGATGCAAAAGGTTCATATGTCGAAGTTTTGGAAAGGTATGTCAACTTGGGGCCAATAGTTGACTTCTGTGTGGTTGATCTTGAGAGACAAGGCCAAGGCCAAGTGGTAACTTGCTCTGGTGCTTACAAAGATGGTTCTCTTCGTGTTGTTCGAAATGGAATTGGAATCAATGAACAGGCATCAGTTGAGCTTCAAGGTATCAAGGGAATGTGGTCATTAAGATCGTCCACTGATGATCCACATGACTTCTTCCTGGTTGTTAGCTTTATCAGTGAGACACGTATTTTGGCAATGAATATGGAGGATGAGCTGGAAGAAACCGAGATACAGGGCTTCTCTTCTCAAGTGCAAACTTTATTTTGCCATGATGCTGTCTTCAATCAACTTGTGCAGGTCACTTCAAGCTCGGTAAGGCTAGTCAGTTCTACATCTAGGGATCTGAAGAATGAGTGGCATGCTCCTGCAGGCTATTCAATTAATGTAGCAACAGCTAATGCCACCCAGGTTTTATTGGCAACTGGAGGAAAGCATTTAGTTTATTTAGAAATTGGTGACGGGGTCTTGATAGAGAAGAAGTATGTACAGTTGGACTTTGAGATCTCATGCCTTGACATAAACCCCATAGGTGAAAATCCTAATTATAGCCAGCTAGCAGCTGTTGGGATGTGGACAGATATAAGTGTGCAAATATACTCTCTTCCTGATCTGAACCGCATCACAAAGGAGCATTTGGGAGGAGAGATCATACCTCGTTCTGTTCTTCTCTGTACTTTTGAAGGGATATCCTATCTGTTATGTGCTCTTGGTGATGGACACCTCTTAAACTTTACACTGAACACAACTACTGGCGAATTAACAGACAGGAAGAAAGTCTCTCTTGGGACGCAGCCCATTACACTCCGTACTTTCTCATCTAAGAATACTACTCATGTGTTTGCTGCATCGGATAGACCAACTGTCATCTACAGTAGTAACAAGAAACTGCTTTACAGCAATGTAAATTTGAAAGAAGTCAGCCATATGTGCCCATTCAACTCTGCTGCTTTCCCAGACAGCCTTGCGATTGCAAAAGAAGGTGAACTTACCATTGGCACAATTGATGACATCCAGAAGCTTCATATCCGTTCTATTCCTCTAGGGGAGCATGCACGCCGCATCTGCCATCAGGAGCAGTCGAGGACCTTTGCAATATGTAGTGTAAAAAATAATCAGACTGGTGCAGAGGATTCTGAAACACACTTCATCCGTTTGTTAGATGACCAAAGTTTTGACCTCGTGACGTATTATCAACTTGATGCTTTCGAGTATGCTTGTTCCATACTTAGCTGTTCCTTCTCAGATGATAGTAATGTATATTACTGTGTTGGGACTGCATATGTTCTGCCAGAAGAAAATGAGCCGACCAAGGGTCGCATTCTGGTTTTCCTGGTCGAAGATGGGAAGCTGCAGCTCATCGCTGAAAAGGAAACTAAGGGATCTGTTTACTCTTTGAATGCTTTCAATGGAAAATTACTTGCTGCCATCAATCAAAAGATACAGTTATACAAGTGGACACTCCGGGATGATGGTACTCGTGAGCTGCAGTCTGAATGCGGACATCATGGTCACATACTTGCCCTCTACGTACAAACTCGTGGAGACTTCATTGTTGTTGGTGATTTAATGAAGTCGATTTCGTTACTAATCTATAAGCACGAGGAAGGTGCCATCGAGGAGCGAGCCCGAGACTACAACGCAAATTGGATGTCCGCTGTAGAGATCCTTGATGATGATGTTTACCTTGGCGCTGAAAATTTTTACAACCTCTTTACTGTTAGGAAAAATAGTGAAGGTGCGACTGATGAGGAACGGGGCCGTCTTGAGGTTGTTGGAGAGTATCACCTTGGAGAATTTGTCAATCGGTTTCGGCATGGTTCTCTTGTCATGCGCTTGCCAGATTCTGATGTGGGCCAGATTCCTACTGTGATATTTGGCACTGTTAATGGTGTAATTGGAGTTATTGCTTCACTTCCTCAAGAACATTACTCCTTTCTAGAGAAGCTTCAGACGAACTTGAGGAAGGTGATAAAGGGTGTTGGAGGATTGAGCCATGAGCAGTGGAGATCATTCTGCAATGAGAAGAAGACCTCAGACACCAAAAATTTCTTGGATGGGGATCTTATTGAGTCATTCCTTGATCTCAGCCGTGGGAAAATGGATGAAATTTCAAAACAAATGAGTGTTCCAGTGGAGGAGCTCTGCAAGAGAGTAGAAGAGCTGACAAGGTTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 ko05161 ko05203 map03420 map04120 map05161 map05203

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1089

Amino Acids

121.49

Weight (kDa)

5.22

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	16 - 343	3.5e-79	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	389 - 698	6.6e-68	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	745 - 1058	1.6e-81	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05420 AT4G05420 AT4G21100
fragaria_vesca	FvH4_3g09700 FvH4_3g09700
malus_domestica	MD00G1109600.v1.1 MD05G1276000.v1.1
prunus_persica	Prupe.4G088300_v2.0.a1 Prupe.4G088300_v2.0.a1
pyrus_communis	pycom05g25700 pycom10g21110
rosa_chinensis	RchiOBHm_Chr5g0015371
rosa_laevigata	RLG00000032196
rosa_multiflora	Rmu_sc0017755.1_g000009 Rmu_ssc0000085.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061090
rosa_rugosa	Rorug05G0026900
rosa_samantha	Rh5AG120500 Rh5BG119300 Rh5CG129900 Rh5DG118500
rosa_wichuraiana	Rw5G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	845
AarI	CACCTGC	1 cut(s)	843
AasI	GACNNNNNNGTC	1 cut(s)	2598
Acc36I	ACCTGC	2 cut(s)	843, 1378
AccB1I	GGYRCC	1 cut(s)	2699
AciI	CCGC	7 cut(s)	351, 562, 681, 1708, 2149, 2589, 2745
AclWI	GGATC	7 cut(s)	365, 958, 1226, 1440, 2479, 2749, 3159
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	6 cut(s)	123, 1996, 2788, 2885, 3136, 3198
AcuI	CTGAAG	5 cut(s)	254, 470, 611, 1457, 3023
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	5 cut(s)	1578, 1765, 1900, 2566, 2622
AfiI	CCNNNNNNNGG	5 cut(s)	176, 274, 680, 2402, 2857
AflIII	ACRYGT	1 cut(s)	1274
AhdI	GACNNNNNGTC	2 cut(s)	1952, 2403
AjnI	CCWGG	5 cut(s)	222, 543, 1248, 1497, 2421
AjuI	GAANNNNNNNTTGG	2 cut(s)	2067, 2099
Alw21I	GWGCWC	4 cut(s)	90, 888, 1798, 3234
Alw26I	GTCTC	6 cut(s)	325, 1075, 1265, 1873, 2628, 2715
AlwI	GGATC	7 cut(s)	365, 958, 1226, 1440, 2479, 2749, 3159
AlwNI	CAGNNNCTG	1 cut(s)	2936
Ama87I	CYCGRG	1 cut(s)	2718
AoxI	GGCC	8 cut(s)	27, 76, 206, 1046, 1087, 1093, 2848, 2944
ApoI	RAATTY	6 cut(s)	123, 1996, 2788, 2885, 3136, 3198
ArsI	GACNNNNNNTTYG	6 cut(s)	1264, 1296, 2246, 2278, 2726, 2758
AseI	ATTAAT	2 cut(s)	386, 1473
Asp700I	GAANNNNTTC	2 cut(s)	126, 2492
AspLEI	GCGC	2 cut(s)	2783, 2925
AspS9I	GGNCC	7 cut(s)	28, 77, 614, 1046, 2175, 2848, 2944
AsuC2I	CCSGG	1 cut(s)	2555
AsuII	TTCGAA	1 cut(s)	1147
AsuNHI	GCTAGC	1 cut(s)	1645
AvaI	CYCGRG	1 cut(s)	2718
AvaII	GGWCC	2 cut(s)	614, 2175
AxyI	CCTNAGG	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	2024
BanI	GGYRCC	1 cut(s)	2699
BanII	GRGCYC	4 cut(s)	90, 888, 2719, 3234
BauI	CACGAG	4 cut(s)	2270, 2568, 2628, 2690
BbsI	GAAGAC	2 cut(s)	1363, 3125
Bbv12I	GWGCWC	4 cut(s)	90, 888, 1798, 3234
BceAI	ACGGC	3 cut(s)	42, 2835, 3165
BcgI	CGANNNNNNTGC	2 cut(s)	2681, 2715
BciT130I	CCWGG	5 cut(s)	224, 545, 1250, 1499, 2423
BclI	TGATCA	1 cut(s)	814
BcnI	CCSGG	1 cut(s)	2555
BcoDI	GTCTC	6 cut(s)	325, 1075, 1265, 1873, 2628, 2715
BfaI	CTAG	7 cut(s)	491, 798, 1412, 1428, 1646, 2132, 3029
BfmI	CTRYAG	7 cut(s)	342, 718, 1458, 1960, 2441, 2576, 2748
BfoI	RGCGCY	1 cut(s)	2784
BfuAI	ACCTGC	2 cut(s)	843, 1378
BglII	AGATCT	1 cut(s)	1593
Bme1390I	CCNGG	6 cut(s)	224, 545, 1250, 1499, 2423, 2555
Bme18I	GGWCC	2 cut(s)	614, 2175
BmeRI	GACNNNNNGTC	2 cut(s)	1952, 2403
BmeT110I	CYCGRG	1 cut(s)	2718
BmgT120I	GGNCC	7 cut(s)	28, 77, 614, 1046, 2175, 2848, 2944
BmiI	GGNNCC	4 cut(s)	615, 1047, 2701, 2849
BmrFI	CCNGG	6 cut(s)	224, 545, 1250, 1499, 2423, 2555
BmtI	GCTAGC	1 cut(s)	1649
BoxI	GACNNNNGTC	1 cut(s)	351
BpiI	GAAGAC	2 cut(s)	1363, 3125
BpmI	CTGGAG	1 cut(s)	1536
Bpu14I	TTCGAA	1 cut(s)	1147
BpuEI	CTTGAG	7 cut(s)	494, 860, 1097, 1323, 2876, 2994, 3070
BpuMI	CCSGG	1 cut(s)	2555
Bsa29I	ATCGAT	1 cut(s)	902
BsaAI	YACGTR	2 cut(s)	1277, 2620
BsaBI	GATNNNNATC	1 cut(s)	3150
BsaJI	CCNNGG	9 cut(s)	222, 303, 617, 1090, 1497, 2400, 2776, 2878, 3181
BsaXI	ACNNNNNCTCC	2 cut(s)	2874, 2904
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 274, 680, 2402, 2857
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	6 cut(s)	662, 874, 1519, 1846, 2215, 3221
Bse21I	CCTNAGG	1 cut(s)	81
Bse3DI	GCAATG	4 cut(s)	315, 1293, 1996, 3115
Bse8I	GATNNNNATC	1 cut(s)	3150
BseBI	CCWGG	5 cut(s)	224, 545, 1250, 1499, 2423
BseCI	ATCGAT	1 cut(s)	902
BseDI	CCNNGG	9 cut(s)	222, 303, 617, 1090, 1497, 2400, 2776, 2878, 3181
BseJI	GATNNNNATC	1 cut(s)	3150
BseLI	CCNNNNNNNGG	5 cut(s)	176, 274, 680, 2402, 2857
BseMI	GCAATG	4 cut(s)	315, 1293, 1996, 3115
BseMII	CTCAG	6 cut(s)	95, 336, 639, 2346, 3138, 3190
BseNI	ACTGG	6 cut(s)	662, 874, 1519, 1846, 2215, 3221
BseRI	GAGGAG	4 cut(s)	129, 1746, 2723, 3242
BseSI	GKGCMC	1 cut(s)	2024
BseYI	CCCAGC	1 cut(s)	821
BsgI	GTGCAG	2 cut(s)	1406, 2235
BshFI	GGCC	8 cut(s)	29, 78, 208, 1048, 1089, 1095, 2850, 2946
BshNI	GGYRCC	1 cut(s)	2699
BshVI	ATCGAT	1 cut(s)	902
BsiHKAI	GWGCWC	4 cut(s)	90, 888, 1798, 3234
BsiHKCI	CYCGRG	1 cut(s)	2718
BsiSI	CCGG	2 cut(s)	75, 2554
BslFI	GGGAC	3 cut(s)	977, 1891, 2377
BslI	CCNNNNNNNGG	5 cut(s)	176, 274, 680, 2402, 2857
BsmAI	GTCTC	6 cut(s)	325, 1075, 1265, 1873, 2628, 2715
BsmFI	GGGAC	3 cut(s)	977, 1891, 2377
BsmI	GAATGC	3 cut(s)	2409, 2494, 2591
BsnI	GGCC	8 cut(s)	29, 78, 208, 1048, 1089, 1095, 2850, 2946
BsoBI	CYCGRG	1 cut(s)	2718
Bsp119I	TTCGAA	1 cut(s)	1147
Bsp1286I	GDGCHC	6 cut(s)	90, 888, 1798, 2024, 2719, 3234
Bsp1407I	TGTACA	1 cut(s)	1576
BspACI	CCGC	7 cut(s)	351, 562, 681, 1708, 2149, 2589, 2745
BspANI	GGCC	8 cut(s)	29, 78, 208, 1048, 1089, 1095, 2850, 2946
BspCNI	CTCAG	6 cut(s)	94, 335, 640, 2345, 3137, 3189
BspDI	ATCGAT	1 cut(s)	902
BspLI	GGNNCC	4 cut(s)	615, 1047, 2701, 2849
BspMAI	CTGCAG	4 cut(s)	722, 1462, 2445, 2580
BspMI	ACCTGC	2 cut(s)	843, 1378
BspOI	GCTAGC	1 cut(s)	1649
BspPI	GGATC	7 cut(s)	365, 958, 1226, 1440, 2479, 2749, 3159
BspQI	GCTCTTC	1 cut(s)	3243
BspT104I	TTCGAA	1 cut(s)	1147
BspT107I	GGYRCC	1 cut(s)	2699
BsrDI	GCAATG	4 cut(s)	315, 1293, 1996, 3115
BsrFI	RCCGGY	1 cut(s)	74
BsrGI	TGTACA	1 cut(s)	1576
BsrI	ACTGG	6 cut(s)	662, 874, 1519, 1846, 2215, 3221
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	9 cut(s)	222, 303, 617, 1090, 1497, 2400, 2776, 2878, 3181
BssSI	CACGAG	4 cut(s)	2270, 2568, 2628, 2690
BssT1I	CCWWGG	6 cut(s)	303, 617, 1090, 2400, 2776, 2878
Bst2BI	CACGAG	4 cut(s)	2270, 2568, 2628, 2690
Bst2UI	CCWGG	5 cut(s)	224, 545, 1250, 1499, 2423
Bst4CI	ACNGT	9 cut(s)	756, 1581, 1954, 1964, 2357, 2535, 2809, 2959, 2974
Bst6I	CTCTTC	5 cut(s)	772, 1140, 1339, 1698, 3243
BstAUI	TGTACA	1 cut(s)	1576
BstBAI	YACGTR	2 cut(s)	1277, 2620
BstBI	TTCGAA	1 cut(s)	1147
BstC8I	GCNNGC	9 cut(s)	562, 1452, 1462, 1643, 1647, 2142, 2146, 2715, 2927
BstDEI	CTNAG	9 cut(s)	81, 322, 648, 1911, 2318, 2332, 2466, 3124, 3176
BstDSI	CCRYGG	1 cut(s)	3181
BstH2I	RGCGCY	1 cut(s)	2784
BstHHI	GCGC	2 cut(s)	2783, 2925
BstMAI	GTCTC	6 cut(s)	325, 1075, 1265, 1873, 2628, 2715
BstMWI	GCNNNNNNNGC	4 cut(s)	737, 979, 2019, 2154
BstNI	CCWGG	5 cut(s)	224, 545, 1250, 1499, 2423
BstNSI	RCATGY	2 cut(s)	1454, 2144
BstPAI	GACNNNNGTC	1 cut(s)	351
BstSCI	CCNGG	6 cut(s)	222, 543, 1248, 1497, 2421, 2553
BstSFI	CTRYAG	7 cut(s)	342, 718, 1458, 1960, 2441, 2576, 2748
BstSLI	GKGCMC	1 cut(s)	2024
BstSNI	TACGTA	1 cut(s)	2620
BstV2I	GAAGAC	2 cut(s)	1363, 3125
BstX2I	RGATCY	6 cut(s)	370, 1432, 1593, 2471, 2754, 3151
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	6 cut(s)	370, 1432, 1593, 2471, 2754, 3151
Bsu15I	ATCGAT	1 cut(s)	902
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	8 cut(s)	29, 78, 208, 1048, 1089, 1095, 2850, 2946
BsuTUI	ATCGAT	1 cut(s)	902
BtgI	CCRYGG	1 cut(s)	3181
BtgZI	GCGATG	1 cut(s)	2434
BtsI	GCAGTG	3 cut(s)	99, 727, 3098
BveI	ACCTGC	2 cut(s)	843, 1378
Cac8I	GCNNGC	9 cut(s)	562, 1452, 1462, 1643, 1647, 2142, 2146, 2715, 2927
CaiI	CAGNNNCTG	1 cut(s)	2936
CfoI	GCGC	2 cut(s)	2783, 2925
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	7 cut(s)	28, 77, 614, 1046, 2175, 2848, 2944
ClaI	ATCGAT	1 cut(s)	902
CseI	GACGC	2 cut(s)	49, 1888
Csp6I	GTAC	5 cut(s)	1577, 1764, 1899, 2565, 2621
CviQI	GTAC	5 cut(s)	1577, 1764, 1899, 2565, 2621
DdeI	CTNAG	9 cut(s)	81, 322, 648, 1911, 2318, 2332, 2466, 3124, 3176
DraI	TTTAAA	1 cut(s)	736
DraIII	CACNNNGTG	1 cut(s)	215
DrdI	GACNNNNNNGTC	1 cut(s)	2598
DriI	GACNNNNNGTC	2 cut(s)	1952, 2403
DseDI	GACNNNNNNGTC	1 cut(s)	2598
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	5 cut(s)	772, 1140, 1339, 1698, 3243
Eam1105I	GACNNNNNGTC	2 cut(s)	1952, 2403
EarI	CTCTTC	5 cut(s)	772, 1140, 1339, 1698, 3243
Ecl136II	GAGCTC	3 cut(s)	88, 886, 3232
Eco105I	TACGTA	1 cut(s)	2620
Eco130I	CCWWGG	6 cut(s)	303, 617, 1090, 2400, 2776, 2878
Eco24I	GRGCYC	4 cut(s)	90, 888, 2719, 3234
Eco32I	GATATC	2 cut(s)	496, 1779
Eco47I	GGWCC	2 cut(s)	614, 2175
Eco53kI	GAGCTC	3 cut(s)	88, 886, 3232
Eco57I	CTGAAG	5 cut(s)	254, 470, 611, 1457, 3023
Eco81I	CCTNAGG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	2718
EcoICRI	GAGCTC	3 cut(s)	88, 886, 3232
EcoO109I	RGGNCCY	2 cut(s)	614, 2175
EcoRII	CCWGG	5 cut(s)	222, 543, 1248, 1497, 2421
EcoRV	GATATC	2 cut(s)	496, 1779
EcoT14I	CCWWGG	6 cut(s)	303, 617, 1090, 2400, 2776, 2878
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	4 cut(s)	90, 888, 2719, 3234
ErhI	CCWWGG	6 cut(s)	303, 617, 1090, 2400, 2776, 2878
FalI	AAGNNNNNCTT	4 cut(s)	1857, 1889, 2061, 2093
FaqI	GGGAC	3 cut(s)	977, 1891, 2377
FauI	CCCGC	1 cut(s)	569
FauNDI	CATATG	4 cut(s)	577, 1012, 2016, 2371
FbaI	TGATCA	1 cut(s)	814
FriOI	GRGCYC	4 cut(s)	90, 888, 2719, 3234
FspBI	CTAG	7 cut(s)	491, 798, 1412, 1428, 1646, 2132, 3029
GlaI	GCGC	2 cut(s)	2782, 2924
GsaI	CCCAGC	1 cut(s)	825
GsuI	CTGGAG	1 cut(s)	1536
HaeII	RGCGCY	1 cut(s)	2784
HaeIII	GGCC	8 cut(s)	29, 78, 208, 1048, 1089, 1095, 2850, 2946
HapII	CCGG	2 cut(s)	75, 2554
HgaI	GACGC	2 cut(s)	49, 1888
HhaI	GCGC	2 cut(s)	2783, 2925
Hin6I	GCGC	2 cut(s)	2781, 2923
HinP1I	GCGC	2 cut(s)	2781, 2923
HincII	GTYRAC	2 cut(s)	1039, 1057
HindII	GTYRAC	2 cut(s)	1039, 1057
HindIII	AAGCTT	2 cut(s)	2108, 3035
HinfI	GANTC	8 cut(s)	873, 936, 965, 1161, 2222, 2933, 2950, 3161
HpaII	CCGG	2 cut(s)	75, 2554
Hpy166II	GTNNAC	9 cut(s)	715, 1039, 1057, 1224, 1665, 2075, 2479, 2547, 2773
Hpy8I	GTNNAC	9 cut(s)	715, 1039, 1057, 1224, 1665, 2075, 2479, 2547, 2773
Hpy99I	CGWCG	2 cut(s)	23, 65
HpyCH4III	ACNGT	9 cut(s)	756, 1581, 1954, 1964, 2357, 2535, 2809, 2959, 2974
HpyCH4IV	ACGT	5 cut(s)	18, 45, 1276, 2276, 2619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	737, 979, 2019, 2154
HpyF3I	CTNAG	9 cut(s)	81, 322, 648, 1911, 2318, 2332, 2466, 3124, 3176
HpySE526I	ACGT	5 cut(s)	18, 45, 1276, 2276, 2619
HspAI	GCGC	2 cut(s)	2781, 2923
Ksp22I	TGATCA	1 cut(s)	814
LguI	GCTCTTC	1 cut(s)	3243
LmnI	GCTCC	8 cut(s)	85, 292, 1459, 1720, 2137, 2164, 2710, 3229
MaeI	CTAG	7 cut(s)	491, 798, 1412, 1428, 1646, 2132, 3029
MaeII	ACGT	5 cut(s)	18, 45, 1276, 2276, 2619
MfeI	CAATTG	3 cut(s)	528, 708, 2091
MflI	RGATCY	6 cut(s)	370, 1432, 1593, 2471, 2754, 3151
MhlI	GDGCHC	6 cut(s)	90, 888, 1798, 2024, 2719, 3234
MlyI	GAGTC	3 cut(s)	867, 959, 3170
MmeI	TCCRAC	3 cut(s)	1563, 2845, 3052
Mph1103I	ATGCAT	1 cut(s)	733
MroXI	GAANNNNTTC	2 cut(s)	126, 2492
MslI	CAYNNNNRTG	2 cut(s)	402, 676
MspA1I	CMGCKG	4 cut(s)	351, 448, 1652, 2747
MspI	CCGG	2 cut(s)	75, 2554
MspR9I	CCNGG	6 cut(s)	224, 545, 1250, 1499, 2423, 2555
MunI	CAATTG	3 cut(s)	528, 708, 2091
Mva1269I	GAATGC	3 cut(s)	2409, 2494, 2591
MvaI	CCWGG	5 cut(s)	224, 545, 1250, 1499, 2423
MwoI	GCNNNNNNNGC	4 cut(s)	737, 979, 2019, 2154
NciI	CCSGG	1 cut(s)	2555
NdeI	CATATG	4 cut(s)	577, 1012, 2016, 2371
NheI	GCTAGC	1 cut(s)	1645
NlaIV	GGNNCC	4 cut(s)	615, 1047, 2701, 2849
NmuCI	GTSAC	8 cut(s)	22, 46, 621, 865, 1390, 1547, 2272, 2600
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	2 cut(s)	1454, 2144
NspV	TTCGAA	1 cut(s)	1147
PaeI	GCATGC	2 cut(s)	1454, 2144
PaqCI	CACCTGC	1 cut(s)	843
PciSI	GCTCTTC	1 cut(s)	3243
PcsI	WCGNNNNNNNCGW	2 cut(s)	334, 1144
PctI	GAATGC	3 cut(s)	2409, 2494, 2591
PdmI	GAANNNNTTC	2 cut(s)	126, 2492
PfeI	GAWTC	5 cut(s)	936, 1161, 2222, 2933, 2950
PflFI	GACNNNGTC	1 cut(s)	1553
PfoI	TCCNGGA	1 cut(s)	2553
PleI	GAGTC	3 cut(s)	867, 959, 3169
PpsI	GAGTC	3 cut(s)	867, 959, 3169
Ppu21I	YACGTR	2 cut(s)	1277, 2620
PpuMI	RGGWCCY	2 cut(s)	614, 2175
PshAI	GACNNNNGTC	1 cut(s)	351
PshBI	ATTAAT	2 cut(s)	386, 1473
PsiI	TTATAA	1 cut(s)	845
Psp124BI	GAGCTC	3 cut(s)	90, 888, 3234
Psp5II	RGGWCCY	2 cut(s)	614, 2175
Psp6I	CCWGG	5 cut(s)	222, 543, 1248, 1497, 2421
PspFI	CCCAGC	1 cut(s)	821
PspGI	CCWGG	5 cut(s)	222, 543, 1248, 1497, 2421
PspN4I	GGNNCC	4 cut(s)	615, 1047, 2701, 2849
PspPI	GGNCC	7 cut(s)	28, 77, 614, 1046, 2175, 2848, 2944
PspPPI	RGGWCCY	2 cut(s)	614, 2175
PstI	CTGCAG	4 cut(s)	722, 1462, 2445, 2580
PstNI	CAGNNNCTG	1 cut(s)	2936
PsuI	RGATCY	6 cut(s)	370, 1432, 1593, 2471, 2754, 3151
PsyI	GACNNNGTC	1 cut(s)	1553
PvuII	CAGCTG	2 cut(s)	448, 1652
RsaI	GTAC	5 cut(s)	1578, 1765, 1900, 2566, 2622
RsaNI	GTAC	5 cut(s)	1577, 1764, 1899, 2565, 2621
RseI	CAYNNNNRTG	2 cut(s)	402, 676
SacI	GAGCTC	3 cut(s)	90, 888, 3234
SapI	GCTCTTC	1 cut(s)	3243
Sau96I	GGNCC	7 cut(s)	28, 77, 614, 1046, 2175, 2848, 2944
SbfI	CCTGCAGG	1 cut(s)	1462
SchI	GAGTC	3 cut(s)	867, 959, 3170
ScrFI	CCNGG	6 cut(s)	224, 545, 1250, 1499, 2423, 2555
SdaI	CCTGCAGG	1 cut(s)	1462
SduI	GDGCHC	6 cut(s)	90, 888, 1798, 2024, 2719, 3234
SfcI	CTRYAG	7 cut(s)	342, 718, 1458, 1960, 2441, 2576, 2748
SfuI	TTCGAA	1 cut(s)	1147
SinI	GGWCC	2 cut(s)	614, 2175
SmiMI	CAYNNNNRTG	2 cut(s)	402, 676
SmlI	CTYRAG	7 cut(s)	473, 875, 1076, 1338, 2855, 3009, 3049
SmoI	CTYRAG	7 cut(s)	473, 875, 1076, 1338, 2855, 3009, 3049
SnaBI	TACGTA	1 cut(s)	2620
SphI	GCATGC	2 cut(s)	1454, 2144
Sse8387I	CCTGCAGG	1 cut(s)	1462
SsiI	CCGC	7 cut(s)	351, 562, 681, 1708, 2149, 2589, 2745
SspMI	CTAG	7 cut(s)	491, 798, 1412, 1428, 1646, 2132, 3029
SstI	GAGCTC	3 cut(s)	90, 888, 3234
StyD4I	CCNGG	6 cut(s)	222, 543, 1248, 1497, 2421, 2553
StyI	CCWWGG	6 cut(s)	303, 617, 1090, 2400, 2776, 2878
TaaI	ACNGT	9 cut(s)	756, 1581, 1954, 1964, 2357, 2535, 2809, 2959, 2974
TaiI	ACGT	5 cut(s)	21, 48, 1279, 2279, 2622
TatI	WGTACW	2 cut(s)	1576, 1763
TauI	GCSGC	1 cut(s)	2151
TfiI	GAWTC	5 cut(s)	936, 1161, 2222, 2933, 2950
TscAI	CASTG	9 cut(s)	106, 278, 727, 1231, 1273, 1833, 2977, 3098, 3228
TseFI	GTSAC	8 cut(s)	22, 46, 621, 865, 1390, 1547, 2272, 2600
Tsp45I	GTSAC	8 cut(s)	22, 46, 621, 865, 1390, 1547, 2272, 2600
TspDTI	ATGAA	9 cut(s)	386, 999, 1182, 1304, 2102, 2227, 2629, 2675, 3210
TspGWI	ACGGA	4 cut(s)	130, 1886, 2108, 2231
TspRI	CASTG	9 cut(s)	106, 278, 727, 1231, 1273, 1833, 2977, 3098, 3228
Tth111I	GACNNNGTC	1 cut(s)	1553
VpaK11BI	GGWCC	2 cut(s)	614, 2175
VspI	ATTAAT	2 cut(s)	386, 1473
XapI	RAATTY	6 cut(s)	123, 1996, 2788, 2885, 3136, 3198
XbaI	TCTAGA	2 cut(s)	490, 3028
XceI	RCATGY	2 cut(s)	1454, 2144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3139
XmnI	GAANNNNTTC	2 cut(s)	126, 2492
XspI	CTAG	7 cut(s)	491, 798, 1412, 1428, 1646, 2132, 3029
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.