Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009295

Physical Location & Seq

Genomic Coordinates Forward (+)

83275990 .. 83284063

Gene Structure 8074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2595 bp

ATGTTGAAACGCAGGGAGCTTATTACCAAGCTTGAGGAACTTCAAGTTTTAGATATCAAGTTTCTTTATGGTTGTTCAAAACCCACAATTGTAGTTCTTTACCAGGATAACAAGGATGCCCGCCATGTCAAAACATATGAGGTTGCTCTGAAGGATAAAGATTTTGTCGAGGGTCCTTGGTCACAGAACAACCTTGACAATGGGGCTGAGTTGTTAATACCAGTTCCTCCACCACTATGCGGTGTTCTAATTATTGGAGAGGAAACAATTGTTTACTGCAGTGCCAATGCATTTAAAGCAATCCCCATAAGACCGTCCATCACAAGAGCCTATGGAAGAGTGGATGCAGATGGTTCTAGGTATCTACTTGGGGATCATGCTGGGCTACTTCACCTACTTGTTATAACCCATGAGAAAGAAAAGGTGACTGGACTCAAGATCGAGCTCTTGGGTGAAACATCGATTGCATCTACAATCTCTTATCTTGATAATGCATTCGTCTATGTTGGTTCAAGCTATGGGGACTCACAGCTTGTAAAGCTGAATGTACAGCTGGATGCAAAAGGTTCATATGTTGAAGTTTTGGAAAGGTATGTCAACTTGGGGCCAATAGTTGACTTCTGTGTGGTTGATCTTGAGAGACAAGGCCAAGGCCAAGTGGTAACTTGCTCTGGTGCTTACAAAGATGGTTCTCTTCGTGTTGTTCGAAATGGAATTGGAATCAATGAACAGGCGTCAGTTGAGCTTCAAGGTATCAAGGGAATGTGGTCATTAAGATCGTCCACTGATGATCCACATGACTTCTTCCTGGTTGTTAGCTTTATCAGTGAGACACGTATTTTGGCCATGAATATGGAGGATGAGCTGGAAGAAACCGAGATACAGGGCTTCTCTTCTCAAGTGCAAACTTTATTTTGCCATGATGCTGTCTTCAATCAACTTGTGCAGGGATCTGAATTGAAATGGACAGTATCTAATGCTGATGAATTGACATCACAGGTCACTTCAAGCTCGGTAAGGCTAGTCGGTTCTACATCTAGGGATCTGAAGAATGAGTGGCATGCTCCAGCAGGCTATTCGATTAATGTAGCAACAGCTAATGCCACCCAGGTTTTATTGGCAACTGGAGGAAAGCATTTAGTTTATTTAGAAATTGGTGATGGGGTCTTGATAGAGAAGAAGTATGTACAGTTGGACTTTGAGATCTCATGCCTTGACATAAACCCCATAGGTGAAAATCCTAATTATAGCCAGCTAGCAGCTGTTGGGATGTGGACAGATATAAGTGTGCAAATATACTCTCTTCCTGATCTGAACCGCATCACAAAGGAGCATTTGGGAGGAGAGATCATACCTCGTTCTGTTCTTCTCTGTACTTTTGAAGGGATATCCTATCTGCTATGTGCTCTTGGTGATGGACACCTCTTAAACTTTACACTGAACACAACTACTGGCGAATTAACAGACAGGAAGAAAGTCTCTCTTGGGACGCAGCCCATTACACTCCGTACTTTCTCATCTAAGAATACTACTCATGTGTTTGCTGCATCGGATAGACCAACTGTCATCTACAGTAGTAACAAGAAACTGCTTTACAGCAATGTAAATTTGAAAGAAGTCAGCCATATGTGCCCATTCAACTCTGCTGCTTTCCCAGACAGCCTTGCGATTGCTAAAGAAGGTGAACTTACCATTGGCACAATTGATGACATCCAGAAGCTTCATATCCGTTCTATTCCTTTAGGGGAGCATGCACGCCGCATCTGCCATCAGGAGCAGTCGAGGACCTTTGCAATATGTAGTGTAAAAAATAATCAGACTGGTGCAGAAGATTCTGAAACACACTTCATCCGTTTGTTAGATGACCAAAGTTTTGACCTCGTGTCGTATTATCAACTTGATGCTTTCGAGTATGCTTGTTCCATACTTAGCTGTTCCTTCTCAGATGATAGTAATGTATATTACTGTGTTGGGACTGCATACGTTCTGCCAGAAGAGAATGAGCCAACCAAGCACGAGGAAGGTGCCATTGAGGAGCGAGCCCGAGACTACAATGCAAATTGGATGTCCGCTGTAGAGATCCTTGATGATGATGTTTACCTTGGCGCTGAAAATTTTTACAACCTCTTTACTGTTAGGAAAAATAGTGAAGGTGCGACTGATGAGGAACGGGGCCGTCTTGAGGTTGTTGGAGAGTATCATCTTGGGGAATTTGTCAATCGGTTTCGGCATGGTTCTCTTGTCATGCGCTTGCCAGATTCTGATGTGGGCCAGATTCCTACTGTGATATTTGGCACTGTTAATGGTGTAATTGGAGTTATTGCTTCACTTCCTCAAGAACATTACTCCTTTCTAGAGAAGCTTCAGACGAACTTGAGGAAGGTGATAAAGGGTGTTGGAGGATTGAGCCATGAGCAATGGAGATCATTCTGCAATGAGAAGAAGACCTCAGACACCAAAAATTTCTTGGATGGCGATCTTATCGAGTCATTCCTTGATCTCAGCCGTGGGAAAATGGATGAAATTTCAAAACAAATGAGCGTTCCAGTGGAGGAGCTCTGCAAGAGAGTAGAAGAGCTGACAAGGTTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 ko05161 ko05203 map03420 map04120 map05161 map05203

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

864

Amino Acids

96.24

Weight (kDa)

5.02

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	9 - 196	1.1e-39	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	242 - 568	6.9e-63	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	674 - 833	7.2e-41	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05420 AT4G05420 AT4G21100
fragaria_vesca	FvH4_3g09700 FvH4_3g09700
malus_domestica	MD00G1109600.v1.1 MD05G1276000.v1.1
prunus_persica	Prupe.4G088300_v2.0.a1 Prupe.4G088300_v2.0.a1
pyrus_communis	pycom05g25700 pycom10g21110
rosa_chinensis	RchiOBHm_Chr5g0015371
rosa_laevigata	RLG00000032196
rosa_multiflora	Rmu_sc0017755.1_g000009 Rmu_ssc0000085.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061090
rosa_rugosa	Rorug05G0026900
rosa_samantha	Rh5AG120500 Rh5BG119300 Rh5CG129900 Rh5DG118500
rosa_wichuraiana	Rw5G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	2024
AciI	CCGC	5 cut(s)	121, 240, 1318, 1759, 2070
AclWI	GGATC	5 cut(s)	381, 785, 958, 1050, 2074
AcoI	YGGCCR	1 cut(s)	843
AcsI	RAATTY	5 cut(s)	1606, 2113, 2210, 2461, 2523
AcuI	CTGAAG	3 cut(s)	170, 1067, 2348
AcyI	GRCGYC	1 cut(s)	734
AfaI	GTAC	4 cut(s)	549, 1188, 1375, 1510
AfiI	CCNNNNNNNGG	2 cut(s)	239, 2182
AflIII	ACRYGT	1 cut(s)	833
AhdI	GACNNNNNGTC	2 cut(s)	1562, 1882
AjnI	CCWGG	3 cut(s)	102, 807, 1107
AjuI	GAANNNNNNNTTGG	2 cut(s)	1677, 1709
Alw21I	GWGCWC	3 cut(s)	447, 1408, 2559
Alw26I	GTCTC	4 cut(s)	634, 824, 1483, 2040
AlwI	GGATC	5 cut(s)	381, 785, 958, 1050, 2074
AlwNI	CAGNNNCTG	1 cut(s)	2261
Ama87I	CYCGRG	1 cut(s)	2043
AoxI	GGCC	6 cut(s)	605, 646, 652, 843, 2173, 2269
ApeKI	GCWGC	4 cut(s)	1259, 1492, 1544, 1646
ApoI	RAATTY	5 cut(s)	1606, 2113, 2210, 2461, 2523
ArsI	GACNNNNNNTTYG	6 cut(s)	823, 855, 1856, 1888, 2051, 2083
AseI	ATTAAT	1 cut(s)	1083
AspLEI	GCGC	2 cut(s)	2108, 2250
AspS9I	GGNCC	5 cut(s)	173, 605, 1785, 2173, 2269
AsuHPI	GGTGA	8 cut(s)	383, 436, 464, 1169, 1244, 1424, 1694, 2395
AsuII	TTCGAA	1 cut(s)	706
AsuNHI	GCTAGC	1 cut(s)	1255
AvaI	CYCGRG	1 cut(s)	2043
AvaII	GGWCC	2 cut(s)	173, 1785
BaeGI	GKGCMC	1 cut(s)	1634
BalI	TGGCCA	1 cut(s)	845
BanI	GGYRCC	1 cut(s)	2024
BanII	GRGCYC	3 cut(s)	447, 2044, 2559
BauI	CACGAG	2 cut(s)	1880, 2015
BbsI	GAAGAC	2 cut(s)	922, 2450
Bbv12I	GWGCWC	3 cut(s)	447, 1408, 2559
BbvI	GCAGC	4 cut(s)	1271, 1504, 1531, 1633
BccI	CCATC	7 cut(s)	326, 344, 680, 1154, 1409, 1776, 2465
BceAI	ACGGC	2 cut(s)	2160, 2490
BcgI	CGANNNNNNTGC	4 cut(s)	1059, 1093, 2006, 2040
BciT130I	CCWGG	3 cut(s)	104, 809, 1109
BcoDI	GTCTC	4 cut(s)	634, 824, 1483, 2040
BfaI	CTAG	5 cut(s)	357, 1022, 1038, 1256, 2354
BfmI	CTRYAG	3 cut(s)	277, 1570, 2073
BfoI	RGCGCY	1 cut(s)	2109
BglII	AGATCT	1 cut(s)	1203
BisI	GCNGC	5 cut(s)	1260, 1493, 1545, 1647, 1759
BlsI	GCNGC	5 cut(s)	1261, 1494, 1546, 1648, 1760
Bme1390I	CCNGG	3 cut(s)	104, 809, 1109
Bme18I	GGWCC	2 cut(s)	173, 1785
BmeRI	GACNNNNNGTC	2 cut(s)	1562, 1882
BmeT110I	CYCGRG	1 cut(s)	2043
BmgT120I	GGNCC	5 cut(s)	173, 605, 1785, 2173, 2269
BmiI	GGNNCC	4 cut(s)	174, 606, 2026, 2174
BmrFI	CCNGG	3 cut(s)	104, 809, 1109
BmsI	GCATC	9 cut(s)	106, 334, 476, 547, 913, 1329, 1556, 1770, 1891
BmtI	GCTAGC	1 cut(s)	1259
BpiI	GAAGAC	2 cut(s)	922, 2450
BpmI	CTGGAG	2 cut(s)	1050, 1146
Bpu14I	TTCGAA	1 cut(s)	706
BpuEI	CTTGAG	7 cut(s)	53, 419, 656, 882, 2201, 2319, 2395
Bsa29I	ATCGAT	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	836
BsaBI	GATNNNNATC	1 cut(s)	2475
BsaHI	GRCGYC	1 cut(s)	734
BsaJI	CCNNGG	5 cut(s)	176, 649, 1107, 2101, 2506
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 2182
Bse1I	ACTGG	6 cut(s)	221, 433, 1129, 1456, 1825, 2546
Bse3DI	GCAATG	3 cut(s)	1606, 2423, 2440
Bse8I	GATNNNNATC	1 cut(s)	2475
BseBI	CCWGG	3 cut(s)	104, 809, 1109
BseCI	ATCGAT	1 cut(s)	461
BseDI	CCNNGG	5 cut(s)	176, 649, 1107, 2101, 2506
BseJI	GATNNNNATC	1 cut(s)	2475
BseLI	CCNNNNNNNGG	2 cut(s)	239, 2182
BseMI	GCAATG	3 cut(s)	1606, 2423, 2440
BseMII	CTCAG	4 cut(s)	198, 1956, 2463, 2515
BseNI	ACTGG	6 cut(s)	221, 433, 1129, 1456, 1825, 2546
BseRI	GAGGAG	3 cut(s)	1356, 2048, 2567
BseSI	GKGCMC	1 cut(s)	1634
BseXI	GCAGC	4 cut(s)	1271, 1504, 1531, 1633
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	2 cut(s)	965, 1845
BshFI	GGCC	6 cut(s)	607, 648, 654, 845, 2175, 2271
BshNI	GGYRCC	1 cut(s)	2024
BshVI	ATCGAT	1 cut(s)	461
BsiHKAI	GWGCWC	3 cut(s)	447, 1408, 2559
BsiHKCI	CYCGRG	1 cut(s)	2043
BslFI	GGGAC	3 cut(s)	536, 1501, 1987
BslI	CCNNNNNNNGG	2 cut(s)	239, 2182
BsmAI	GTCTC	4 cut(s)	634, 824, 1483, 2040
BsmFI	GGGAC	3 cut(s)	536, 1501, 1987
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	6 cut(s)	607, 648, 654, 845, 2175, 2271
BsoBI	CYCGRG	1 cut(s)	2043
Bsp119I	TTCGAA	1 cut(s)	706
Bsp1286I	GDGCHC	5 cut(s)	447, 1408, 1634, 2044, 2559
Bsp1407I	TGTACA	2 cut(s)	547, 1186
BspACI	CCGC	5 cut(s)	121, 240, 1318, 1759, 2070
BspANI	GGCC	6 cut(s)	607, 648, 654, 845, 2175, 2271
BspCNI	CTCAG	4 cut(s)	199, 1955, 2462, 2514
BspDI	ATCGAT	1 cut(s)	461
BspLI	GGNNCC	4 cut(s)	174, 606, 2026, 2174
BspMAI	CTGCAG	1 cut(s)	281
BspOI	GCTAGC	1 cut(s)	1259
BspPI	GGATC	5 cut(s)	381, 785, 958, 1050, 2074
BspQI	GCTCTTC	1 cut(s)	2568
BspT104I	TTCGAA	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	2024
BsrDI	GCAATG	3 cut(s)	1606, 2423, 2440
BsrGI	TGTACA	2 cut(s)	547, 1186
BsrI	ACTGG	6 cut(s)	221, 433, 1129, 1456, 1825, 2546
BssECI	CCNNGG	5 cut(s)	176, 649, 1107, 2101, 2506
BssNI	GRCGYC	1 cut(s)	734
BssSI	CACGAG	2 cut(s)	1880, 2015
BssT1I	CCWWGG	3 cut(s)	176, 649, 2101
Bst2BI	CACGAG	2 cut(s)	1880, 2015
Bst2UI	CCWGG	3 cut(s)	104, 809, 1109
Bst4CI	ACNGT	9 cut(s)	315, 970, 1191, 1564, 1574, 1967, 2134, 2284, 2299
Bst6I	CTCTTC	6 cut(s)	331, 699, 898, 1308, 1989, 2568
BstACI	GRCGYC	1 cut(s)	734
BstAUI	TGTACA	2 cut(s)	547, 1186
BstBAI	YACGTR	1 cut(s)	836
BstBI	TTCGAA	1 cut(s)	706
BstC8I	GCNNGC	9 cut(s)	121, 1062, 1072, 1253, 1257, 1752, 1756, 2040, 2252
BstDEI	CTNAG	6 cut(s)	207, 1521, 1928, 1942, 2449, 2501
BstDSI	CCRYGG	1 cut(s)	2506
BstH2I	RGCGCY	1 cut(s)	2109
BstHHI	GCGC	2 cut(s)	2108, 2250
BstMAI	GTCTC	4 cut(s)	634, 824, 1483, 2040
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 538, 1629, 1764, 2011
BstNI	CCWGG	3 cut(s)	104, 809, 1109
BstNSI	RCATGY	2 cut(s)	1064, 1754
BstSCI	CCNGG	3 cut(s)	102, 807, 1107
BstSFI	CTRYAG	3 cut(s)	277, 1570, 2073
BstSLI	GKGCMC	1 cut(s)	1634
BstV1I	GCAGC	4 cut(s)	1271, 1504, 1531, 1633
BstV2I	GAAGAC	2 cut(s)	922, 2450
BstX2I	RGATCY	4 cut(s)	950, 1042, 1203, 2079
BstXI	CCANNNNNNTGG	1 cut(s)	853
BstYI	RGATCY	4 cut(s)	950, 1042, 1203, 2079
Bsu15I	ATCGAT	1 cut(s)	461
BsuRI	GGCC	6 cut(s)	607, 648, 654, 845, 2175, 2271
BsuTUI	ATCGAT	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	2506
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	7 cut(s)	286, 783, 832, 1436, 2295, 2553, 2590
Cac8I	GCNNGC	9 cut(s)	121, 1062, 1072, 1253, 1257, 1752, 1756, 2040, 2252
CaiI	CAGNNNCTG	1 cut(s)	2261
CfoI	GCGC	2 cut(s)	2108, 2250
Cfr13I	GGNCC	5 cut(s)	173, 605, 1785, 2173, 2269
ClaI	ATCGAT	1 cut(s)	461
CseI	GACGC	2 cut(s)	723, 1498
Csp6I	GTAC	4 cut(s)	548, 1187, 1374, 1509
CviQI	GTAC	4 cut(s)	548, 1187, 1374, 1509
DdeI	CTNAG	6 cut(s)	207, 1521, 1928, 1942, 2449, 2501
DraI	TTTAAA	1 cut(s)	295
DriI	GACNNNNNGTC	2 cut(s)	1562, 1882
EaeI	YGGCCR	1 cut(s)	843
Eam1104I	CTCTTC	6 cut(s)	331, 699, 898, 1308, 1989, 2568
Eam1105I	GACNNNNNGTC	2 cut(s)	1562, 1882
EarI	CTCTTC	6 cut(s)	331, 699, 898, 1308, 1989, 2568
Ecl136II	GAGCTC	2 cut(s)	445, 2557
Eco130I	CCWWGG	3 cut(s)	176, 649, 2101
Eco24I	GRGCYC	3 cut(s)	447, 2044, 2559
Eco32I	GATATC	2 cut(s)	55, 1389
Eco47I	GGWCC	2 cut(s)	173, 1785
Eco53kI	GAGCTC	2 cut(s)	445, 2557
Eco57I	CTGAAG	3 cut(s)	170, 1067, 2348
Eco88I	CYCGRG	1 cut(s)	2043
EcoICRI	GAGCTC	2 cut(s)	445, 2557
EcoO109I	RGGNCCY	2 cut(s)	173, 1785
EcoRII	CCWGG	3 cut(s)	102, 807, 1107
EcoRV	GATATC	2 cut(s)	55, 1389
EcoT14I	CCWWGG	3 cut(s)	176, 649, 2101
EcoT22I	ATGCAT	2 cut(s)	292, 496
EcoT38I	GRGCYC	3 cut(s)	447, 2044, 2559
ErhI	CCWWGG	3 cut(s)	176, 649, 2101
FalI	AAGNNNNNCTT	4 cut(s)	1467, 1499, 1671, 1703
FaqI	GGGAC	3 cut(s)	536, 1501, 1987
FauI	CCCGC	1 cut(s)	128
FauNDI	CATATG	3 cut(s)	136, 571, 1626
Fnu4HI	GCNGC	5 cut(s)	1260, 1493, 1545, 1647, 1759
FriOI	GRGCYC	3 cut(s)	447, 2044, 2559
Fsp4HI	GCNGC	5 cut(s)	1260, 1493, 1545, 1647, 1759
FspBI	CTAG	5 cut(s)	357, 1022, 1038, 1256, 2354
GlaI	GCGC	2 cut(s)	2107, 2249
GluI	GCNGC	5 cut(s)	1260, 1493, 1545, 1647, 1759
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	2 cut(s)	1050, 1146
HaeII	RGCGCY	1 cut(s)	2109
HaeIII	GGCC	6 cut(s)	607, 648, 654, 845, 2175, 2271
HgaI	GACGC	2 cut(s)	723, 1498
HhaI	GCGC	2 cut(s)	2108, 2250
Hin1I	GRCGYC	1 cut(s)	734
Hin6I	GCGC	2 cut(s)	2106, 2248
HinP1I	GCGC	2 cut(s)	2106, 2248
HincII	GTYRAC	2 cut(s)	598, 616
HindII	GTYRAC	2 cut(s)	598, 616
HindIII	AAGCTT	3 cut(s)	29, 1718, 2360
HinfI	GANTC	7 cut(s)	432, 524, 720, 1832, 2258, 2275, 2486
HphI	GGTGA	8 cut(s)	383, 436, 464, 1169, 1244, 1424, 1694, 2395
Hpy166II	GTNNAC	7 cut(s)	274, 598, 616, 783, 1275, 1685, 2098
Hpy8I	GTNNAC	7 cut(s)	274, 598, 616, 783, 1275, 1685, 2098
HpyAV	CCTTC	7 cut(s)	145, 1376, 1673, 1948, 2015, 2144, 2374
HpyCH4III	ACNGT	9 cut(s)	315, 970, 1191, 1564, 1574, 1967, 2134, 2284, 2299
HpyCH4IV	ACGT	2 cut(s)	835, 1983
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 538, 1629, 1764, 2011
HpyF3I	CTNAG	6 cut(s)	207, 1521, 1928, 1942, 2449, 2501
HpySE526I	ACGT	2 cut(s)	835, 1983
Hsp92I	GRCGYC	1 cut(s)	734
HspAI	GCGC	2 cut(s)	2106, 2248
LguI	GCTCTTC	1 cut(s)	2568
LmnI	GCTCC	7 cut(s)	16, 1069, 1330, 1747, 1774, 2035, 2554
Lsp1109I	GCAGC	4 cut(s)	1271, 1504, 1531, 1633
LweI	GCATC	9 cut(s)	106, 334, 476, 547, 913, 1329, 1556, 1770, 1891
MaeI	CTAG	5 cut(s)	357, 1022, 1038, 1256, 2354
MaeII	ACGT	2 cut(s)	835, 1983
MaeIII	GTNAC	5 cut(s)	180, 424, 661, 1000, 1577
MfeI	CAATTG	3 cut(s)	87, 267, 1701
MflI	RGATCY	4 cut(s)	950, 1042, 1203, 2079
MhlI	GDGCHC	5 cut(s)	447, 1408, 1634, 2044, 2559
MlsI	TGGCCA	1 cut(s)	845
MluNI	TGGCCA	1 cut(s)	845
MlyI	GAGTC	3 cut(s)	426, 518, 2495
MmeI	TCCRAC	3 cut(s)	1173, 2170, 2377
Mox20I	TGGCCA	1 cut(s)	845
Mph1103I	ATGCAT	2 cut(s)	292, 496
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	7 cut(s)	215, 294, 773, 1083, 1427, 1460, 2301
MslI	CAYNNNNRTG	2 cut(s)	235, 851
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	3 cut(s)	553, 1262, 2072
MspR9I	CCNGG	3 cut(s)	104, 809, 1109
MunI	CAATTG	3 cut(s)	87, 267, 1701
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	3 cut(s)	104, 809, 1109
MwoI	GCNNNNNNNGC	5 cut(s)	296, 538, 1629, 1764, 2011
NdeI	CATATG	3 cut(s)	136, 571, 1626
NheI	GCTAGC	1 cut(s)	1255
NlaIV	GGNNCC	4 cut(s)	174, 606, 2026, 2174
NmuCI	GTSAC	3 cut(s)	180, 424, 1000
NsiI	ATGCAT	2 cut(s)	292, 496
NspI	RCATGY	2 cut(s)	1064, 1754
NspV	TTCGAA	1 cut(s)	706
PaeI	GCATGC	2 cut(s)	1064, 1754
PciSI	GCTCTTC	1 cut(s)	2568
PcsI	WCGNNNNNNNCGW	1 cut(s)	703
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	4 cut(s)	720, 1832, 2258, 2275
PkrI	GCNGC	5 cut(s)	1261, 1494, 1546, 1648, 1760
PleI	GAGTC	3 cut(s)	426, 518, 2494
PpsI	GAGTC	3 cut(s)	426, 518, 2494
Ppu21I	YACGTR	1 cut(s)	836
PpuMI	RGGWCCY	2 cut(s)	173, 1785
PshBI	ATTAAT	1 cut(s)	1083
PsiI	TTATAA	1 cut(s)	404
Psp124BI	GAGCTC	2 cut(s)	447, 2559
Psp5II	RGGWCCY	2 cut(s)	173, 1785
Psp6I	CCWGG	3 cut(s)	102, 807, 1107
PspFI	CCCAGC	1 cut(s)	380
PspGI	CCWGG	3 cut(s)	102, 807, 1107
PspN4I	GGNNCC	4 cut(s)	174, 606, 2026, 2174
PspPI	GGNCC	5 cut(s)	173, 605, 1785, 2173, 2269
PspPPI	RGGWCCY	2 cut(s)	173, 1785
PstI	CTGCAG	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	2261
PsuI	RGATCY	4 cut(s)	950, 1042, 1203, 2079
PvuII	CAGCTG	2 cut(s)	553, 1262
RsaI	GTAC	4 cut(s)	549, 1188, 1375, 1510
RsaNI	GTAC	4 cut(s)	548, 1187, 1374, 1509
RseI	CAYNNNNRTG	2 cut(s)	235, 851
SacI	GAGCTC	2 cut(s)	447, 2559
SapI	GCTCTTC	1 cut(s)	2568
SaqAI	TTAA	7 cut(s)	215, 294, 773, 1083, 1427, 1460, 2301
SatI	GCNGC	5 cut(s)	1260, 1493, 1545, 1647, 1759
Sau96I	GGNCC	5 cut(s)	173, 605, 1785, 2173, 2269
SchI	GAGTC	3 cut(s)	426, 518, 2495
ScrFI	CCNGG	3 cut(s)	104, 809, 1109
SduI	GDGCHC	5 cut(s)	447, 1408, 1634, 2044, 2559
SfaNI	GCATC	9 cut(s)	106, 334, 476, 547, 913, 1329, 1556, 1770, 1891
SfcI	CTRYAG	3 cut(s)	277, 1570, 2073
SfuI	TTCGAA	1 cut(s)	706
SinI	GGWCC	2 cut(s)	173, 1785
SmiMI	CAYNNNNRTG	2 cut(s)	235, 851
SmlI	CTYRAG	7 cut(s)	32, 434, 635, 897, 2180, 2334, 2374
SmoI	CTYRAG	7 cut(s)	32, 434, 635, 897, 2180, 2334, 2374
SphI	GCATGC	2 cut(s)	1064, 1754
SsiI	CCGC	5 cut(s)	121, 240, 1318, 1759, 2070
SspMI	CTAG	5 cut(s)	357, 1022, 1038, 1256, 2354
SstI	GAGCTC	2 cut(s)	447, 2559
StyD4I	CCNGG	3 cut(s)	102, 807, 1107
StyI	CCWWGG	3 cut(s)	176, 649, 2101
TaaI	ACNGT	9 cut(s)	315, 970, 1191, 1564, 1574, 1967, 2134, 2284, 2299
TaiI	ACGT	2 cut(s)	838, 1986
TaqI	TCGA	8 cut(s)	168, 441, 461, 706, 1079, 1781, 1908, 2484
TatI	WGTACW	3 cut(s)	547, 1186, 1373
TauI	GCSGC	1 cut(s)	1761
TfiI	GAWTC	4 cut(s)	720, 1832, 2258, 2275
Tru1I	TTAA	7 cut(s)	215, 294, 773, 1083, 1427, 1460, 2301
Tru9I	TTAA	7 cut(s)	215, 294, 773, 1083, 1427, 1460, 2301
TscAI	CASTG	6 cut(s)	286, 790, 832, 1443, 2302, 2553
TseFI	GTSAC	3 cut(s)	180, 424, 1000
TseI	GCWGC	4 cut(s)	1259, 1492, 1544, 1646
Tsp45I	GTSAC	3 cut(s)	180, 424, 1000
TspDTI	ATGAA	7 cut(s)	558, 741, 863, 999, 1712, 1837, 2535
TspGWI	ACGGA	3 cut(s)	1496, 1718, 1841
TspRI	CASTG	6 cut(s)	286, 790, 832, 1443, 2302, 2553
VpaK11BI	GGWCC	2 cut(s)	173, 1785
VspI	ATTAAT	1 cut(s)	1083
XapI	RAATTY	5 cut(s)	1606, 2113, 2210, 2461, 2523
XbaI	TCTAGA	1 cut(s)	2353
XceI	RCATGY	2 cut(s)	1064, 1754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2464
XspI	CTAG	5 cut(s)	357, 1022, 1038, 1256, 2354
Zsp2I	ATGCAT	2 cut(s)	292, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.