Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009295

Physical Location & Seq

Genomic Coordinates Reverse (-)

5634814 .. 5642964

Gene Structure 8151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3270 bp

ATGAGTGTCTGGAACTACGTCGTCACGGCCCACAAGCCCACCAACGTCACCCATTCCTGCGTCGGCAATTTCACCGGCCCTCAGGAGCTCAATCTCATCATCGCAAAATGCACGCGGATCGAAATTCTTCTACTTACTCCTCTGGGTTTGCAGCCTGTCTTGGATGTGCCGATATATGGACGAATTGCAACCCTTAAACTCTTTCGGCCACATGGCGAAGCACAGGATTTTCTGTTTATTGCAACAGAAAGATACAAGTTTTGTGTCCTTCAGTGGGATGTCGAAACACAGGAGCTTGTTACCAAGGCAATGGGGGATGTCTCGGATCGTATAGGTCGTCCTACAGACAGTGGTCAGATTGGTATAATAGATCCAGATTGCAGATTAATTGGACTTCATTTATATGATGGCTTGTTTAAGGTTATTCCTTTTGACAACAAAGGGCAGCTGAAGGAAGCATTTAACATTAGGCTTGAGGAACTTCAAGTTTTGGATATCAAGTTTCTTTATGGTTGTTCAAAACCCACAATTGTAGTTCTTTACCAGGATAATAAGGATGCTCGCCATGTCAAAACATATGAGGTTGCTCTGAAGGATAAAGATTTTGTTGAGGGTCCTTGGTCACAGAACAACCTTGACAATGGGGCTGAGTTGTTAATACCAGTTCCTCCACCACTTTGCGGTGTTCTTATTATCGGAGAGGAAACAATTGTTTACTGCAGCGCCAATGCATTTAAAGCAATCCCCATAAGACCGTCCATCACAAGAGCCTATGGAAGAGTGGATGCGGATGGTTCTAGGTATCTACTTGGTGATCATGCTGGGCTTCTTCACCTACTTGTTATAACTCATGAGAAAGAAAAGGTGACTGGACTCAAGATGGAGCTCTTGGGTGAAACATCGATTGCATCTACAATCTCTTATCTTGATAATGCATTCGTTTATATTGGATCAAGCTATGGGGACTCACAGCTTGTAAAGCTAAATCTTCAGCCGGATGCAAAAGGCTCATATGTCGAAGTTTTGGAAAGGTATGTCAACTTGGGGCCCATAGTTGACTTCTGTGTGGTTGATCTTGAGAGGCAAGGCCAAGGTCAAGTGGTAACTTGCTCTGGTGCTTACAAAGATGGTTCTCTTCGTGTTGTTCGAAATGGAATTGGAATCAATGAACAGGCATCAGTTGAGCTTCAAGGTATCAAGGGAATGTGGTCATTAAGATCTTCCACTGATGATCCGCACGACTTCTTCCTGGTTGTTAGCTTTATTAGTGAGACACGTATTTTGGCAATGAATATGGAGGATGAGCTGGAAGAAACTGAGATAGAGGGCTTCTCTTCTGAAGTGCAAACTTTATTTTGCCATGATGCTGTCTTCAATCAACTTGTGCAGGTCACTTCAAGCTCAGTAAGGCTAGTGAGTTCTACATCTAGGGATCTGAAGAATGAGTGGCATGCTCCGGCAGGCTATTCTATTAATGTAGCAACAGCTAATGCCACCCAGGTTTTATTGGCAACTGGAGGAAAGCATTTAGTTTATTTAGAAATTGGTGACGGGGTCTTGACAGAAAAGAAGTATGTACATTTGGACTTTGAGATCTCATGCCTTGATATAAACCCCATAGGTGAAAACCCTAACTATAGCCAACTAGCAGCTGTTGGGATGTGGACAGATATAAGTGTTCAAATTTACTCTCTTCCTGATCTGAACCGCATCACAAAGGAACATTTGGGAGGAGAGATCATACCTCGTTCTGTTCTTCTCTGTACTTTTGAAGGGATATCCTATCTGCTATGTGCACTTGGCGATGGACACCTCTTAAACTTTACATTGAACACAACTACTGGCGAGTTAACTGACAGGAAGAAAGTCTCTCTTGGGACGCAGCCCATTACACTCCGTACATTCTCATCTAAGAGTACTACACATGTGTTTGCTGCATCGGATAGACCAACTGTCATCTACAGCAGTAACAAGAAACTACTTTACAGCAATGTCAATTTGAAAGAAGTCAGCCATATGTGCCCATTCAACTCTGCTGCTTTCCCAGACAGCCTTGCGATTGCTAAAGAAGGTGAACTTACGATTGGCACAATTGATGACATCCAGAAGCTTCATATCCGTACTATTCCTCTAGGTGAGCATGCACGCCGCATTTGCCATCAGGAGCAGTCGAGGACCTTTGCGATATGTAGTGTGAAAAATAATCAGACTGGTGCAGAAGATTCTGAAACACACTTCATCCGTTTGCTAGATGACCAAAGTTTTGACCTCGTGACGTATTATCAACTTGATGCTTTTGAGTATGCCTGTTCCATACTTAGCTGTTCCTTCTCAGATGATAGTAATGTATATTACTGTGTTGGGACTGCGTATGTTCTTCCAGAAGAAAATGAGCCGACTAAGGGTCGCATTCTGGTTTTCCTAGTTGAAGATGGGAAGATGCAGCTCATTGCTGAGAAGGAGACTAAGGGATCTGTTTATTCTTTAAATGCTTTCAATGGAAAATTACTTGCTGCCATCAATCAGAAGATACAGTTATACAAGTGGACACTCCGGGATGATGGTACACGTGAGCTGCAGTCTGAATGTGGACATCATGGTCACATACTTGCCCTCTATGTACAAACTCGTGGAGACTTCATTGTTGTTGGTGATTTAATGAAGTCAATTTCGTTATTAATTTATAAGCATGAGGAAGGTGCCATTGAGGAGCGAGCCCGAGACTACAATGCGAATTGGATGTCCGCTGTAGAGATCCTCGATGATGATGTTTACCTTGGCGCTGAAAACTTTTACAACCTCTTCACTGTTAGGAAAAATAGTGAAGGTGCGACTGATGAGGAACGGGGCCGTCTTGAGGTTGTTGGAGAGTATCACCTTGGGGAATTTGTCAATCGGTTTCGGCATGGTTCTCTTGTCATGCGCTTGCCAGACTCTGACGTGGGCCAGATTCCTACGGTGATATTTGGCACTGTTAATGGTGTGATTGGAGTCATCGCTTCACTTCCTCGAGATCATTATTCCTTTCTAGAGAAGCTTCAGACAAACTTGAGGAAGGTGATAAAGGGTGTTGGAGGATTGAGCCATGATCAGTGGAGGTCATTCTGCAACGAGAAGAAGACCTCGGACACCAAAAATTTCTTGGATGGTGATCTTATCGAGTCATTCCTTGATCTCAGCCGTGGGAAGATGGATGAAATTTCAAAACAAATGAGTGTTCCAGTAGAAGAGCTCTGCAAGAGAGTAGAAGAGCTCACAAGGTTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 ko05161 ko05203 map03420 map04120 map05161 map05203

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1090

Amino Acids

121.56

Weight (kDa)

5.24

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	16 - 344	4.4e-79	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	389 - 698	3.5e-67	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	745 - 1058	1.7e-80	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05420 AT4G05420 AT4G21100
fragaria_vesca	FvH4_3g09700 FvH4_3g09700
malus_domestica	MD00G1109600.v1.1 MD05G1276000.v1.1
prunus_persica	Prupe.4G088300_v2.0.a1 Prupe.4G088300_v2.0.a1
pyrus_communis	pycom05g25700 pycom10g21110
rosa_chinensis	RchiOBHm_Chr5g0015371
rosa_laevigata	RLG00000032196
rosa_multiflora	Rmu_sc0017755.1_g000009 Rmu_ssc0000085.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061090
rosa_rugosa	Rorug05G0026900
rosa_samantha	Rh5AG120500 Rh5BG119300 Rh5CG129900 Rh5DG118500
rosa_wichuraiana	Rw5G010420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	845, 2685
AasI	GACNNNNNNGTC	1 cut(s)	2598
Acc36I	ACCTGC	1 cut(s)	1378
AccB1I	GGYRCC	1 cut(s)	2699
AccII	CGCG	1 cut(s)	115
AciI	CCGC	7 cut(s)	115, 681, 788, 1235, 1708, 2149, 2745
AclWI	GGATC	8 cut(s)	125, 333, 365, 958, 1226, 1440, 2479, 2749
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	5 cut(s)	123, 1683, 2885, 3136, 3198
AcuI	CTGAAG	7 cut(s)	254, 470, 611, 974, 1359, 1457, 3023
AcvI	CACGTG	1 cut(s)	2570
AfaI	GTAC	7 cut(s)	1578, 1765, 1900, 1918, 2122, 2566, 2622
AfiI	CCNNNNNNNGG	5 cut(s)	176, 274, 680, 2402, 2857
AflIII	ACRYGT	3 cut(s)	1274, 1924, 2567
AhdI	GACNNNNNGTC	2 cut(s)	1952, 2403
AjiI	CACGTC	1 cut(s)	2941
AjnI	CCWGG	3 cut(s)	543, 1248, 1497
AjuI	GAANNNNNNNTTGG	2 cut(s)	2067, 2099
Alw21I	GWGCWC	5 cut(s)	90, 888, 1798, 3234, 3255
Alw26I	GTCTC	6 cut(s)	325, 1265, 1873, 2456, 2628, 2715
Alw44I	GTGCAC	1 cut(s)	1794
AlwI	GGATC	8 cut(s)	125, 333, 365, 958, 1226, 1440, 2479, 2749
AlwNI	CAGNNNCTG	1 cut(s)	2936
Ama87I	CYCGRG	2 cut(s)	2718, 3009
AoxI	GGCC	7 cut(s)	27, 76, 206, 1046, 1087, 2848, 2944
ApaI	GGGCCC	1 cut(s)	1050
ApaLI	GTGCAC	1 cut(s)	1794
ApoI	RAATTY	5 cut(s)	123, 1683, 2885, 3136, 3198
ArsI	GACNNNNNNTTYG	6 cut(s)	1264, 1296, 2246, 2278, 2726, 2758
AseI	ATTAAT	3 cut(s)	386, 1473, 2678
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	3 cut(s)	725, 2783, 2925
AspS9I	GGNCC	8 cut(s)	28, 77, 614, 1046, 1047, 2175, 2848, 2944
AsuC2I	CCSGG	1 cut(s)	2555
AsuII	TTCGAA	1 cut(s)	1147
AvaI	CYCGRG	2 cut(s)	2718, 3009
AvaII	GGWCC	2 cut(s)	614, 2175
AxyI	CCTNAGG	1 cut(s)	81
BaeGI	GKGCMC	3 cut(s)	1050, 1798, 2024
BanI	GGYRCC	1 cut(s)	2699
BanII	GRGCYC	6 cut(s)	90, 888, 1050, 2719, 3234, 3255
BauI	CACGAG	2 cut(s)	2270, 2628
BbrPI	CACGTG	1 cut(s)	2570
BbsI	GAAGAC	2 cut(s)	1363, 3125
Bbv12I	GWGCWC	5 cut(s)	90, 888, 1798, 3234, 3255
BceAI	ACGGC	3 cut(s)	42, 2835, 3165
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	3 cut(s)	545, 1250, 1499
BclI	TGATCA	2 cut(s)	814, 3088
BcnI	CCSGG	1 cut(s)	2555
BcoDI	GTCTC	6 cut(s)	325, 1265, 1873, 2456, 2628, 2715
BfaI	CTAG	8 cut(s)	798, 1412, 1428, 1646, 2132, 2249, 2423, 3029
BfmI	CTRYAG	6 cut(s)	342, 718, 1636, 1960, 2576, 2748
BfoI	RGCGCY	2 cut(s)	726, 2784
BfuAI	ACCTGC	1 cut(s)	1378
BglII	AGATCT	2 cut(s)	1217, 1593
BmcAI	AGTACT	1 cut(s)	1918
Bme1390I	CCNGG	4 cut(s)	545, 1250, 1499, 2555
Bme18I	GGWCC	2 cut(s)	614, 2175
BmeRI	GACNNNNNGTC	2 cut(s)	1952, 2403
BmeT110I	CYCGRG	2 cut(s)	2718, 3009
BmgBI	CACGTC	1 cut(s)	2941
BmgT120I	GGNCC	8 cut(s)	28, 77, 614, 1046, 1047, 2175, 2848, 2944
BmiI	GGNNCC	5 cut(s)	615, 1047, 1048, 2701, 2849
BmrFI	CCNGG	4 cut(s)	545, 1250, 1499, 2555
BoxI	GACNNNNGTC	1 cut(s)	351
BpiI	GAAGAC	2 cut(s)	1363, 3125
BplI	GAGNNNNNCTC	2 cut(s)	1316, 1348
BpmI	CTGGAG	1 cut(s)	1536
Bpu14I	TTCGAA	1 cut(s)	1147
BpuEI	CTTGAG	5 cut(s)	494, 860, 1097, 2876, 3070
BpuMI	CCSGG	1 cut(s)	2555
Bsa29I	ATCGAT	1 cut(s)	902
BsaAI	YACGTR	2 cut(s)	1277, 2570
BsaBI	GATNNNNATC	1 cut(s)	3150
BsaJI	CCNNGG	8 cut(s)	303, 617, 1090, 1497, 2776, 2878, 3123, 3181
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 274, 680, 2402, 2857
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	6 cut(s)	662, 874, 1519, 1846, 2215, 3221
Bse21I	CCTNAGG	1 cut(s)	81
Bse3DI	GCAATG	4 cut(s)	315, 1293, 1996, 2448
Bse8I	GATNNNNATC	1 cut(s)	3150
BseBI	CCWGG	3 cut(s)	545, 1250, 1499
BseCI	ATCGAT	1 cut(s)	902
BseDI	CCNNGG	8 cut(s)	303, 617, 1090, 1497, 2776, 2878, 3123, 3181
BseJI	GATNNNNATC	1 cut(s)	3150
BseLI	CCNNNNNNNGG	5 cut(s)	176, 274, 680, 2402, 2857
BseMI	GCAATG	4 cut(s)	315, 1293, 1996, 2448
BseMII	CTCAG	7 cut(s)	95, 639, 1308, 1416, 2346, 2445, 3190
BseNI	ACTGG	6 cut(s)	662, 874, 1519, 1846, 2215, 3221
BseRI	GAGGAG	3 cut(s)	129, 1746, 2723
BseSI	GKGCMC	3 cut(s)	1050, 1798, 2024
BseYI	CCCAGC	1 cut(s)	821
BsgI	GTGCAG	2 cut(s)	1406, 2235
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	7 cut(s)	29, 78, 208, 1048, 1089, 2850, 2946
BshNI	GGYRCC	1 cut(s)	2699
BshVI	ATCGAT	1 cut(s)	902
BsiHKAI	GWGCWC	5 cut(s)	90, 888, 1798, 3234, 3255
BsiHKCI	CYCGRG	2 cut(s)	2718, 3009
BsiSI	CCGG	4 cut(s)	75, 995, 1457, 2554
BslFI	GGGAC	3 cut(s)	977, 1891, 2377
BslI	CCNNNNNNNGG	5 cut(s)	176, 274, 680, 2402, 2857
BsmAI	GTCTC	6 cut(s)	325, 1265, 1873, 2456, 2628, 2715
BsmFI	GGGAC	3 cut(s)	977, 1891, 2377
BsmI	GAATGC	2 cut(s)	935, 2409
BsnI	GGCC	7 cut(s)	29, 78, 208, 1048, 1089, 2850, 2946
BsoBI	CYCGRG	2 cut(s)	2718, 3009
Bsp119I	TTCGAA	1 cut(s)	1147
Bsp120I	GGGCCC	1 cut(s)	1046
Bsp1286I	GDGCHC	8 cut(s)	90, 888, 1050, 1798, 2024, 2719, 3234, 3255
Bsp1407I	TGTACA	2 cut(s)	1576, 2620
BspACI	CCGC	7 cut(s)	115, 681, 788, 1235, 1708, 2149, 2745
BspANI	GGCC	7 cut(s)	29, 78, 208, 1048, 1089, 2850, 2946
BspCNI	CTCAG	7 cut(s)	94, 640, 1309, 1415, 2345, 2446, 3189
BspDI	ATCGAT	1 cut(s)	902
BspFNI	CGCG	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	5 cut(s)	615, 1047, 1048, 2701, 2849
BspMAI	CTGCAG	2 cut(s)	722, 2580
BspMI	ACCTGC	1 cut(s)	1378
BspPI	GGATC	8 cut(s)	125, 333, 365, 958, 1226, 1440, 2479, 2749
BspQI	GCTCTTC	2 cut(s)	3222, 3243
BspT104I	TTCGAA	1 cut(s)	1147
BspT107I	GGYRCC	1 cut(s)	2699
BsrDI	GCAATG	4 cut(s)	315, 1293, 1996, 2448
BsrFI	RCCGGY	1 cut(s)	74
BsrGI	TGTACA	2 cut(s)	1576, 2620
BsrI	ACTGG	6 cut(s)	662, 874, 1519, 1846, 2215, 3221
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	8 cut(s)	303, 617, 1090, 1497, 2776, 2878, 3123, 3181
BssSI	CACGAG	2 cut(s)	2270, 2628
BssT1I	CCWWGG	5 cut(s)	303, 617, 1090, 2776, 2878
Bst2BI	CACGAG	2 cut(s)	2270, 2628
Bst2UI	CCWGG	3 cut(s)	545, 1250, 1499
Bst4CI	ACNGT	8 cut(s)	350, 756, 1954, 2357, 2535, 2809, 2959, 2974
Bst6I	CTCTTC	7 cut(s)	772, 1140, 1339, 1698, 2807, 3222, 3243
BstAUI	TGTACA	2 cut(s)	1576, 2620
BstBAI	YACGTR	2 cut(s)	1277, 2570
BstBI	TTCGAA	1 cut(s)	1147
BstC8I	GCNNGC	8 cut(s)	113, 562, 1452, 1462, 2142, 2146, 2715, 2927
BstDSI	CCRYGG	1 cut(s)	3181
BstFNI	CGCG	1 cut(s)	115
BstH2I	RGCGCY	2 cut(s)	726, 2784
BstHHI	GCGC	3 cut(s)	725, 2783, 2925
BstMAI	GTCTC	6 cut(s)	325, 1265, 1873, 2456, 2628, 2715
BstMWI	GCNNNNNNNGC	4 cut(s)	737, 979, 2019, 2154
BstNI	CCWGG	3 cut(s)	545, 1250, 1499
BstNSI	RCATGY	3 cut(s)	1454, 1928, 2144
BstPAI	GACNNNNGTC	1 cut(s)	351
BstSCI	CCNGG	4 cut(s)	543, 1248, 1497, 2553
BstSFI	CTRYAG	6 cut(s)	342, 718, 1636, 1960, 2576, 2748
BstSLI	GKGCMC	3 cut(s)	1050, 1798, 2024
BstUI	CGCG	1 cut(s)	115
BstV2I	GAAGAC	2 cut(s)	1363, 3125
BstX2I	RGATCY	6 cut(s)	370, 1217, 1432, 1593, 2471, 2754
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	6 cut(s)	370, 1217, 1432, 1593, 2471, 2754
Bsu15I	ATCGAT	1 cut(s)	902
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	7 cut(s)	29, 78, 208, 1048, 1089, 2850, 2946
BsuTUI	ATCGAT	1 cut(s)	902
BtgI	CCRYGG	1 cut(s)	3181
BtgZI	GCGATG	3 cut(s)	85, 1818, 2980
BtrI	CACGTC	1 cut(s)	2941
BtsIMutI	CAGTG	7 cut(s)	278, 355, 1224, 2805, 2970, 3098, 3265
BveI	ACCTGC	1 cut(s)	1378
Cac8I	GCNNGC	8 cut(s)	113, 562, 1452, 1462, 2142, 2146, 2715, 2927
CaiI	CAGNNNCTG	1 cut(s)	2936
CciI	TCATGA	1 cut(s)	850
CfoI	GCGC	3 cut(s)	725, 2783, 2925
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	8 cut(s)	28, 77, 614, 1046, 1047, 2175, 2848, 2944
ClaI	ATCGAT	1 cut(s)	902
CseI	GACGC	2 cut(s)	49, 1888
Csp6I	GTAC	7 cut(s)	1577, 1764, 1899, 1917, 2121, 2565, 2621
CviQI	GTAC	7 cut(s)	1577, 1764, 1899, 1917, 2121, 2565, 2621
DraI	TTTAAA	2 cut(s)	736, 2487
DrdI	GACNNNNNNGTC	1 cut(s)	2598
DriI	GACNNNNNGTC	2 cut(s)	1952, 2403
DseDI	GACNNNNNNGTC	1 cut(s)	2598
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	7 cut(s)	772, 1140, 1339, 1698, 2807, 3222, 3243
Eam1105I	GACNNNNNGTC	2 cut(s)	1952, 2403
EarI	CTCTTC	7 cut(s)	772, 1140, 1339, 1698, 2807, 3222, 3243
Ecl136II	GAGCTC	4 cut(s)	88, 886, 3232, 3253
Eco130I	CCWWGG	5 cut(s)	303, 617, 1090, 2776, 2878
Eco24I	GRGCYC	6 cut(s)	90, 888, 1050, 2719, 3234, 3255
Eco32I	GATATC	2 cut(s)	496, 1779
Eco47I	GGWCC	2 cut(s)	614, 2175
Eco53kI	GAGCTC	4 cut(s)	88, 886, 3232, 3253
Eco57I	CTGAAG	7 cut(s)	254, 470, 611, 974, 1359, 1457, 3023
Eco72I	CACGTG	1 cut(s)	2570
Eco81I	CCTNAGG	1 cut(s)	81
Eco88I	CYCGRG	2 cut(s)	2718, 3009
EcoICRI	GAGCTC	4 cut(s)	88, 886, 3232, 3253
EcoO109I	RGGNCCY	3 cut(s)	614, 1046, 2175
EcoRII	CCWGG	3 cut(s)	543, 1248, 1497
EcoRV	GATATC	2 cut(s)	496, 1779
EcoT14I	CCWWGG	5 cut(s)	303, 617, 1090, 2776, 2878
EcoT22I	ATGCAT	2 cut(s)	733, 937
EcoT38I	GRGCYC	6 cut(s)	90, 888, 1050, 2719, 3234, 3255
ErhI	CCWWGG	5 cut(s)	303, 617, 1090, 2776, 2878
FalI	AAGNNNNNCTT	4 cut(s)	1857, 1889, 2061, 2093
FaqI	GGGAC	3 cut(s)	977, 1891, 2377
FauNDI	CATATG	3 cut(s)	577, 1012, 2016
FbaI	TGATCA	2 cut(s)	814, 3088
FriOI	GRGCYC	6 cut(s)	90, 888, 1050, 2719, 3234, 3255
FspBI	CTAG	8 cut(s)	798, 1412, 1428, 1646, 2132, 2249, 2423, 3029
GlaI	GCGC	3 cut(s)	724, 2782, 2924
GsaI	CCCAGC	1 cut(s)	825
GsuI	CTGGAG	1 cut(s)	1536
HaeII	RGCGCY	2 cut(s)	726, 2784
HaeIII	GGCC	7 cut(s)	29, 78, 208, 1048, 1089, 2850, 2946
HapII	CCGG	4 cut(s)	75, 995, 1457, 2554
HgaI	GACGC	2 cut(s)	49, 1888
HhaI	GCGC	3 cut(s)	725, 2783, 2925
Hin6I	GCGC	3 cut(s)	723, 2781, 2923
HinP1I	GCGC	3 cut(s)	723, 2781, 2923
HincII	GTYRAC	3 cut(s)	1039, 1057, 1851
HindII	GTYRAC	3 cut(s)	1039, 1057, 1851
HindIII	AAGCTT	2 cut(s)	2108, 3035
HinfI	GANTC	8 cut(s)	873, 965, 1161, 2222, 2933, 2950, 2991, 3161
HpaI	GTTAAC	1 cut(s)	1851
HpaII	CCGG	4 cut(s)	75, 995, 1457, 2554
Hpy99I	CGWCG	2 cut(s)	23, 65
HpyCH4III	ACNGT	8 cut(s)	350, 756, 1954, 2357, 2535, 2809, 2959, 2974
HpyCH4IV	ACGT	6 cut(s)	18, 45, 1276, 2276, 2569, 2940
HpyF10VI	GCNNNNNNNGC	4 cut(s)	737, 979, 2019, 2154
HpySE526I	ACGT	6 cut(s)	18, 45, 1276, 2276, 2569, 2940
HspAI	GCGC	3 cut(s)	723, 2781, 2923
Ksp22I	TGATCA	2 cut(s)	814, 3088
KspAI	GTTAAC	1 cut(s)	1851
LguI	GCTCTTC	2 cut(s)	3222, 3243
LmnI	GCTCC	6 cut(s)	85, 292, 883, 1459, 2164, 2710
MaeI	CTAG	8 cut(s)	798, 1412, 1428, 1646, 2132, 2249, 2423, 3029
MaeII	ACGT	6 cut(s)	18, 45, 1276, 2276, 2569, 2940
MfeI	CAATTG	3 cut(s)	528, 708, 2091
MflI	RGATCY	6 cut(s)	370, 1217, 1432, 1593, 2471, 2754
MhlI	GDGCHC	8 cut(s)	90, 888, 1050, 1798, 2024, 2719, 3234, 3255
MlyI	GAGTC	5 cut(s)	867, 959, 2927, 3000, 3170
MmeI	TCCRAC	2 cut(s)	2845, 3052
Mph1103I	ATGCAT	2 cut(s)	733, 937
MroXI	GAANNNNTTC	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	3 cut(s)	448, 1652, 2747
MspI	CCGG	4 cut(s)	75, 995, 1457, 2554
MspR9I	CCNGG	4 cut(s)	545, 1250, 1499, 2555
MunI	CAATTG	3 cut(s)	528, 708, 2091
Mva1269I	GAATGC	2 cut(s)	935, 2409
MvaI	CCWGG	3 cut(s)	545, 1250, 1499
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	4 cut(s)	737, 979, 2019, 2154
NciI	CCSGG	1 cut(s)	2555
NdeI	CATATG	3 cut(s)	577, 1012, 2016
NlaIV	GGNNCC	5 cut(s)	615, 1047, 1048, 2701, 2849
NmuCI	GTSAC	8 cut(s)	22, 46, 621, 865, 1390, 1547, 2272, 2600
NsiI	ATGCAT	2 cut(s)	733, 937
NspI	RCATGY	3 cut(s)	1454, 1928, 2144
NspV	TTCGAA	1 cut(s)	1147
PaeI	GCATGC	2 cut(s)	1454, 2144
PaeR7I	CTCGAG	1 cut(s)	3009
PagI	TCATGA	1 cut(s)	850
PciI	ACATGT	1 cut(s)	1924
PciSI	GCTCTTC	2 cut(s)	3222, 3243
PcsI	WCGNNNNNNNCGW	2 cut(s)	334, 1144
PctI	GAATGC	2 cut(s)	935, 2409
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	3 cut(s)	1161, 2222, 2950
PflFI	GACNNNGTC	1 cut(s)	1553
PfoI	TCCNGGA	1 cut(s)	2553
PleI	GAGTC	5 cut(s)	867, 959, 2927, 2999, 3169
PmaCI	CACGTG	1 cut(s)	2570
PmlI	CACGTG	1 cut(s)	2570
PpsI	GAGTC	5 cut(s)	867, 959, 2927, 2999, 3169
Ppu21I	YACGTR	2 cut(s)	1277, 2570
PpuMI	RGGWCCY	2 cut(s)	614, 2175
PscI	ACATGT	1 cut(s)	1924
PshAI	GACNNNNGTC	1 cut(s)	351
PshBI	ATTAAT	3 cut(s)	386, 1473, 2678
PsiI	TTATAA	2 cut(s)	845, 2685
Psp124BI	GAGCTC	4 cut(s)	90, 888, 3234, 3255
Psp5II	RGGWCCY	2 cut(s)	614, 2175
Psp6I	CCWGG	3 cut(s)	543, 1248, 1497
PspCI	CACGTG	1 cut(s)	2570
PspFI	CCCAGC	1 cut(s)	821
PspGI	CCWGG	3 cut(s)	543, 1248, 1497
PspN4I	GGNNCC	5 cut(s)	615, 1047, 1048, 2701, 2849
PspOMI	GGGCCC	1 cut(s)	1046
PspPI	GGNCC	8 cut(s)	28, 77, 614, 1046, 1047, 2175, 2848, 2944
PspPPI	RGGWCCY	2 cut(s)	614, 2175
PstI	CTGCAG	2 cut(s)	722, 2580
PstNI	CAGNNNCTG	1 cut(s)	2936
PsuI	RGATCY	6 cut(s)	370, 1217, 1432, 1593, 2471, 2754
PsyI	GACNNNGTC	1 cut(s)	1553
PvuII	CAGCTG	2 cut(s)	448, 1652
RsaI	GTAC	7 cut(s)	1578, 1765, 1900, 1918, 2122, 2566, 2622
RsaNI	GTAC	7 cut(s)	1577, 1764, 1899, 1917, 2121, 2565, 2621
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	4 cut(s)	90, 888, 3234, 3255
SapI	GCTCTTC	2 cut(s)	3222, 3243
Sau96I	GGNCC	8 cut(s)	28, 77, 614, 1046, 1047, 2175, 2848, 2944
ScaI	AGTACT	1 cut(s)	1918
SchI	GAGTC	5 cut(s)	867, 959, 2927, 3000, 3170
ScrFI	CCNGG	4 cut(s)	545, 1250, 1499, 2555
SduI	GDGCHC	8 cut(s)	90, 888, 1050, 1798, 2024, 2719, 3234, 3255
SfcI	CTRYAG	6 cut(s)	342, 718, 1636, 1960, 2576, 2748
Sfr274I	CTCGAG	1 cut(s)	3009
SfuI	TTCGAA	1 cut(s)	1147
SinI	GGWCC	2 cut(s)	614, 2175
SlaI	CTCGAG	1 cut(s)	3009
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	6 cut(s)	473, 875, 1076, 2855, 3009, 3049
SmoI	CTYRAG	6 cut(s)	473, 875, 1076, 2855, 3009, 3049
SphI	GCATGC	2 cut(s)	1454, 2144
SsiI	CCGC	7 cut(s)	115, 681, 788, 1235, 1708, 2149, 2745
SspMI	CTAG	8 cut(s)	798, 1412, 1428, 1646, 2132, 2249, 2423, 3029
SstI	GAGCTC	4 cut(s)	90, 888, 3234, 3255
StyD4I	CCNGG	4 cut(s)	543, 1248, 1497, 2553
StyI	CCWWGG	5 cut(s)	303, 617, 1090, 2776, 2878
TaaI	ACNGT	8 cut(s)	350, 756, 1954, 2357, 2535, 2809, 2959, 2974
TaiI	ACGT	6 cut(s)	21, 48, 1279, 2279, 2572, 2943
TaqI	TCGA	9 cut(s)	120, 282, 902, 1017, 1147, 2171, 2760, 3010, 3159
TatI	WGTACW	4 cut(s)	1576, 1763, 1916, 2620
TauI	GCSGC	1 cut(s)	2151
TfiI	GAWTC	3 cut(s)	1161, 2222, 2950
TscAI	CASTG	6 cut(s)	278, 355, 1231, 2812, 2977, 3098
TseFI	GTSAC	8 cut(s)	22, 46, 621, 865, 1390, 1547, 2272, 2600
Tsp45I	GTSAC	8 cut(s)	22, 46, 621, 865, 1390, 1547, 2272, 2600
TspDTI	ATGAA	8 cut(s)	386, 1182, 1304, 2102, 2227, 2629, 2675, 3210
TspGWI	ACGGA	3 cut(s)	1886, 2108, 2231
TspRI	CASTG	6 cut(s)	278, 355, 1231, 2812, 2977, 3098
Tth111I	GACNNNGTC	1 cut(s)	1553
VneI	GTGCAC	1 cut(s)	1794
VpaK11BI	GGWCC	2 cut(s)	614, 2175
VspI	ATTAAT	3 cut(s)	386, 1473, 2678
XapI	RAATTY	5 cut(s)	123, 1683, 2885, 3136, 3198
XbaI	TCTAGA	1 cut(s)	3028
XceI	RCATGY	3 cut(s)	1454, 1928, 2144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3139
XhoI	CTCGAG	1 cut(s)	3009
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	8 cut(s)	798, 1412, 1428, 1646, 2132, 2249, 2423, 3029
ZrmI	AGTACT	1 cut(s)	1918
Zsp2I	ATGCAT	2 cut(s)	733, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.