AT4G07990

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007467
Physical Location & Seq
Reverse (-)
4824624 .. 4829167
4544 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G07990.1

Sequence Viewer

Length: 693 bp
ATGGGAGGCGAAGATGATAAAGATAAGAAATGGAATCCTCCACCACCGCAGCAGAAGCCGGACTCAAGGCCTTGGGAAGTCCTCGCGGCTTTTGTAATCTGCGCAACCGCTACTACTTTCGCCGTTCATCAGCTGCGAAGAAATTTTGATTGGGTCTATACCCAGCTAACTAGAACACCGTCGGCGGGAAGAGGAACTTTCCGAACATCTTTTCAGGAGGAAGCATGGAGAAGGTACAATAAACGGATGCAAGAGGAGTATGAGGATGAGTTGGAGAGAGTGGCACGTATTAGGCGTATGCAAAGCGTTTTCAACAGAGAGAGGAATAAATTTAGAAGGGGCTACGAGAACTGGACGGAAAATGATCCTGGTGCACAGCAATACCATCAGCAGTTTCAGCGACATGATTGGTACTGGAAAACTGAGTCTTCGCATAGAAACCAAAGGACCAATCACCAGGAGCCTTCAGACCAGAGAAGAGTATATCCACTATCACACCATTACTCGGTTTTAGGGCTCAGCAGGTCCCGAGCAACTCCATACACAGAAGCTGAGATTAAGAAAGCATTCAGGGAAAAGGCTTTGGAATTCCATCCAGACCAAAATCAGGATAACAAAATTGTAGCTGAAGCAAAATTCAAAGAGGTGTTACTTTCATATGAAGCTATAAAACAGGAAATAAAAGAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

230

Amino Acids

27.78

Weight (kDa)

9.4

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 167 - 227 5.3e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 513
AccII CGCG 1 cut(s) 86
AciI CCGC 4 cut(s) 47, 86, 108, 185
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 4 cut(s) 142, 329, 587, 635
AcuI CTGAAG 2 cut(s) 450, 648
AfaI GTAC 2 cut(s) 236, 413
AfiI CCNNNNNNNGG 3 cut(s) 185, 505, 607
AgsI TTSAA 2 cut(s) 313, 640
AjnI CCWGG 2 cut(s) 367, 456
AjuI GAANNNNNNNTTGG 2 cut(s) 133, 165
AluBI AGCT 5 cut(s) 133, 166, 551, 626, 665
AluI AGCT 5 cut(s) 133, 166, 551, 626, 665
Alw21I GWGCWC 1 cut(s) 376
Alw44I GTGCAC 1 cut(s) 372
AlwI GGATC 1 cut(s) 359
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 528
AoxI GGCC 1 cut(s) 68
ApaLI GTGCAC 1 cut(s) 372
ApeKI GCWGC 2 cut(s) 49, 133
ApoI RAATTY 4 cut(s) 142, 329, 587, 635
Asp700I GAANNNNTTC 1 cut(s) 566
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 447, 525
AsuHPI GGTGA 1 cut(s) 446
AvaI CYCGRG 1 cut(s) 528
AvaII GGWCC 2 cut(s) 447, 525
BaeGI GKGCMC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 519
BbsI GAAGAC 1 cut(s) 420
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 2 cut(s) 61, 120
BccI CCATC 2 cut(s) 393, 600
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 369, 458
BfaI CTAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 513
BisI GCNGC 3 cut(s) 50, 87, 134
BlpI GCTNAGC 1 cut(s) 518
BlsI GCNGC 3 cut(s) 51, 88, 135
Bme1390I CCNGG 2 cut(s) 369, 458
Bme18I GGWCC 2 cut(s) 447, 525
BmeT110I CYCGRG 1 cut(s) 528
BmgT120I GGNCC 2 cut(s) 447, 525
BmiI GGNNCC 2 cut(s) 462, 527
BmrFI CCNGG 2 cut(s) 369, 458
BmsI GCATC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 505, 607
Bse1I ACTGG 2 cut(s) 356, 419
BseBI CCWGG 2 cut(s) 369, 458
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 3 cut(s) 252, 271, 592
BseLI CCNNNNNNNGG 3 cut(s) 185, 505, 607
BseMII CTCAG 3 cut(s) 414, 532, 543
BseNI ACTGG 2 cut(s) 356, 419
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 2 cut(s) 61, 120
BseYI CCCAGC 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 511
BslI CCNNNNNNNGG 3 cut(s) 185, 505, 607
BsmFI GGGAC 1 cut(s) 511
BsmI GAATGC 1 cut(s) 566
BsnI GGCC 1 cut(s) 70
BsoBI CYCGRG 1 cut(s) 528
Bsp1286I GDGCHC 2 cut(s) 376, 519
Bsp143I GATC 1 cut(s) 364
Bsp1720I GCTNAGC 1 cut(s) 518
BspACI CCGC 4 cut(s) 47, 86, 108, 185
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 3 cut(s) 415, 531, 544
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 462, 527
BspMI ACCTGC 1 cut(s) 513
BspPI GGATC 1 cut(s) 359
BsrI ACTGG 2 cut(s) 356, 419
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 2 cut(s) 369, 458
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 2 cut(s) 184, 472
BstBAI YACGTR 1 cut(s) 287
BstDEI CTNAG 3 cut(s) 423, 518, 552
BstF5I GGATG 3 cut(s) 252, 271, 592
BstFNI CGCG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 1 cut(s) 367
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 2 cut(s) 55, 397
BstNI CCWGG 2 cut(s) 369, 458
BstSCI CCNGG 2 cut(s) 367, 456
BstSLI GKGCMC 1 cut(s) 376
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 61, 120
BstV2I GAAGAC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 70
BtsCI GGATG 3 cut(s) 252, 271, 592
BveI ACCTGC 1 cut(s) 513
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 447, 525
Csp6I GTAC 2 cut(s) 235, 412
CviAII CATG 2 cut(s) 225, 404
CviQI GTAC 2 cut(s) 235, 412
DdeI CTNAG 3 cut(s) 423, 518, 552
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 184, 472
EarI CTCTTC 2 cut(s) 184, 472
Eco130I CCWWGG 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 447, 525
Eco57I CTGAAG 2 cut(s) 450, 648
Eco88I CYCGRG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 367, 456
EcoT14I CCWWGG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 71
FaeI CATG 2 cut(s) 228, 407
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FaqI GGGAC 1 cut(s) 511
FatI CATG 2 cut(s) 224, 403
FauI CCCGC 1 cut(s) 178
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 3 cut(s) 50, 87, 134
FokI GGATG 3 cut(s) 259, 278, 579
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 3 cut(s) 50, 87, 134
FspBI CTAG 1 cut(s) 171
FspI TGCGCA 1 cut(s) 103
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 50, 87, 134
GsaI CCCAGC 1 cut(s) 166
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 59
HhaI GCGC 1 cut(s) 104
Hin1II CATG 2 cut(s) 228, 407
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 3 cut(s) 34, 62, 425
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 2 cut(s) 203, 469
Hpy188III TCNNGA 4 cut(s) 215, 528, 596, 608
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 3 cut(s) 225, 330, 474
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 3 cut(s) 250, 301, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 397
HpyF3I CTNAG 3 cut(s) 423, 518, 552
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 2 cut(s) 228, 407
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 1 cut(s) 364
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 2 cut(s) 61, 120
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 648
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 5 cut(s) 23, 150, 201, 420, 489
MhlI GDGCHC 2 cut(s) 376, 519
MluCI AATT 5 cut(s) 142, 329, 587, 618, 635
MlyI GAGTC 2 cut(s) 56, 434
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 8 cut(s) 48, 92, 185, 211, 247, 256, 315, 637
MroXI GAANNNNTTC 1 cut(s) 566
MseI TTAA 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 369, 458
Mva1269I GAATGC 1 cut(s) 566
MvaI CCWGG 2 cut(s) 369, 458
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 55, 397
NdeI CATATG 1 cut(s) 658
NdeII GATC 1 cut(s) 364
NlaIII CATG 2 cut(s) 228, 407
NlaIV GGNNCC 2 cut(s) 462, 527
NsbI TGCGCA 1 cut(s) 103
PceI AGGCCT 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PctI GAATGC 1 cut(s) 566
PdmI GAANNNNTTC 1 cut(s) 566
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 51, 88, 135
PleI GAGTC 2 cut(s) 56, 433
PpsI GAGTC 2 cut(s) 56, 433
Ppu21I YACGTR 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 525
Psp5II RGGWCCY 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 367, 456
PspFI CCCAGC 1 cut(s) 162
PspGI CCWGG 2 cut(s) 367, 456
PspN4I GGNNCC 2 cut(s) 462, 527
PspPI GGNCC 2 cut(s) 447, 525
PspPPI RGGWCCY 1 cut(s) 525
PstNI CAGNNNCTG 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 2 cut(s) 236, 413
RsaNI GTAC 2 cut(s) 235, 412
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 3 cut(s) 50, 87, 134
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 2 cut(s) 447, 525
SchI GAGTC 2 cut(s) 56, 434
ScrFI CCNGG 2 cut(s) 369, 458
SduI GDGCHC 2 cut(s) 376, 519
SetI ASST 9 cut(s) 135, 168, 236, 289, 527, 553, 628, 648, 667
SfaNI GCATC 1 cut(s) 237
SinI GGWCC 2 cut(s) 447, 525
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 5 cut(s) 142, 329, 587, 618, 635
SseBI AGGCCT 1 cut(s) 70
SsiI CCGC 4 cut(s) 47, 86, 108, 185
SspMI CTAG 1 cut(s) 171
StuI AGGCCT 1 cut(s) 70
StyD4I CCNGG 2 cut(s) 367, 456
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 1 cut(s) 289
TasI AATT 5 cut(s) 142, 329, 587, 618, 635
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseI GCWGC 2 cut(s) 49, 133
TspDTI ATGAA 3 cut(s) 116, 645, 675
TspGWI ACGGA 2 cut(s) 259, 371
VneI GTGCAC 1 cut(s) 372
VpaK11BI GGWCC 2 cut(s) 447, 525
XapI RAATTY 4 cut(s) 142, 329, 587, 635
XmnI GAANNNNTTC 1 cut(s) 566
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.