Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007467

Physical Location & Seq

Genomic Coordinates Forward (+)

2174377 .. 2176275

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGCGGCGACGATGATAACCAGAAACGGAGCAGCCAATGGCCGCGGTCGCCGGGCAGGCCCTATCAGAACAAAGAGGAGGACATGAAGCTCTGGGGGATTTTCGTCTTTGGCTTCATTGGCGCCACCGCAACTACTTTGGCGTTGTTCAGATCACAATCATCATGGAGAGGAGGGAGTGGTGGTACAAGTCGGACATCTTTTCAGGAGGAAGCATGGAAAAGATATAATCGGCGCATGCAGGAGGAGTATGAAGAAGAATTGGAGAGAGTGGAACGTATAAGGCGTATGCAGAATGTGTTCAATAGAGAGAGGAACAAATACAAAAGGAGCTATGAGACCTGGAGGGAAAATGGTCAGGGTCAGTATCATCAACATTTCCAAAGAGAGGATTGGTATTGGAAGACTGAGACATCCTTCAAAGACCGCAGGAGTAACTACAGGGAAACTCCTAGAGAACATGGCAACTATTTGTTATCGCAGCACTACTCAATTTTAGGCCTTGACAGGTTTAGAAAAGCACCTTACACAGATGCTGAGATTAAGAGGCCGCTGAAGCAAAGTTCAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

192

Amino Acids

23.28

Weight (kDa)

9.84

Isoelectric Point (pI)

67.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07990 AT4G07990 AT4G07990
fragaria_vesca	FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490
malus_domestica	MD08G1076700.v1.1 MD15G1064000.v1.1
prunus_persica	Prupe.1G418000_v2.0.a1 Prupe.1G418000_v2.0.a1
pyrus_communis	pycom08g06350 pycom15g06070
rosa_chinensis	RchiOBHm_Chr6g0310161
rosa_laevigata	RLG00000010503
rosa_multiflora	Rmu_sc0008163.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158800
rosa_rugosa	Rorug06G0377900 Rorug06G0378000 Rorug06G0378000
rosa_samantha	Rh6AG492000 Rh6BG501600 Rh6DG492600
rosa_wichuraiana	Rw6G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	1 cut(s)	46
AciI	CCGC	6 cut(s)	6, 44, 46, 129, 427, 551
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	304, 421, 567
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	91, 333
AluI	AGCT	2 cut(s)	91, 333
Alw26I	GTCTC	2 cut(s)	332, 404
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	4 cut(s)	41, 59, 499, 548
ApeKI	GCWGC	2 cut(s)	33, 481
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	125, 237
AspS9I	GGNCC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	45, 493
BciT130I	CCWGG	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	332, 404
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	1 cut(s)	439
BfoI	RGCGCY	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	58
BisI	GCNGC	5 cut(s)	7, 34, 44, 482, 551
BlsI	GCNGC	5 cut(s)	8, 35, 45, 483, 552
Bme1390I	CCNGG	2 cut(s)	54, 343
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	54, 343
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	54
BsaBI	GATNNNNATC	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	44
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	413
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	399, 528
BseRI	GAGGAG	3 cut(s)	92, 186, 260
BseXI	GCAGC	2 cut(s)	45, 493
Bsh1236I	CGCG	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	4 cut(s)	43, 61, 501, 550
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	2 cut(s)	332, 404
BsnI	GGCC	4 cut(s)	43, 61, 501, 550
Bso31I	GGTCTC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	152
BspACI	CCGC	6 cut(s)	6, 44, 46, 129, 427, 551
BspANI	GGCC	4 cut(s)	43, 61, 501, 550
BspCNI	CTCAG	2 cut(s)	400, 529
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	152
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	59, 239
BstDEI	CTNAG	2 cut(s)	408, 537
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	413
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	125, 237
BstKTI	GATC	1 cut(s)	155
BstMAI	GTCTC	2 cut(s)	332, 404
BstMBI	GATC	1 cut(s)	152
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 58, 120, 556
BstNI	CCWGG	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	2 cut(s)	52, 341
BstSFI	CTRYAG	1 cut(s)	439
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	45, 493
BstV2I	GAAGAC	1 cut(s)	410
BsuRI	GGCC	4 cut(s)	43, 61, 501, 550
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	59, 239
CaiI	CAGNNNCTG	1 cut(s)	536
CfoI	GCGC	2 cut(s)	125, 237
Cfr13I	GGNCC	1 cut(s)	60
Cfr42I	CCGCGG	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	5 cut(s)	85, 165, 216, 238, 461
CviJI	RGCY	8 cut(s)	36, 43, 61, 91, 114, 333, 501, 550
CviKI_1	RGCY	8 cut(s)	36, 43, 61, 91, 114, 333, 501, 550
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	2 cut(s)	408, 537
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	341
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaeI	CATG	5 cut(s)	88, 168, 219, 241, 464
FatI	CATG	5 cut(s)	84, 164, 215, 237, 460
Fnu4HI	GCNGC	5 cut(s)	7, 34, 44, 482, 551
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	5 cut(s)	7, 34, 44, 482, 551
FspBI	CTAG	1 cut(s)	453
GlaI	GCGC	2 cut(s)	124, 236
GluI	GCNGC	5 cut(s)	7, 34, 44, 482, 551
GsuI	CTGGAG	1 cut(s)	364
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	43, 61, 501, 550
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	2 cut(s)	125, 237
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	88, 168, 219, 241, 464
Hin6I	GCGC	2 cut(s)	123, 235
HinP1I	GCGC	2 cut(s)	123, 235
HpaII	CCGG	1 cut(s)	53
Hpy188I	TCNGA	3 cut(s)	69, 152, 195
Hpy188III	TCNNGA	1 cut(s)	206
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	241, 292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 58, 120, 556
HpyF3I	CTNAG	2 cut(s)	408, 537
HpySE526I	ACGT	1 cut(s)	277
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	88, 168, 219, 241, 464
HspAI	GCGC	2 cut(s)	123, 235
KasI	GGCGCC	1 cut(s)	122
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	30, 330
Lsp1109I	GCAGC	2 cut(s)	45, 493
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	1 cut(s)	154
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	1 cut(s)	152
MboII	GAAGA	3 cut(s)	266, 269, 415
MluCI	AATT	2 cut(s)	260, 492
Mly113I	GGCGCC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	1 cut(s)	543
MspA1I	CMGCKG	2 cut(s)	46, 553
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	54, 343
MvaI	CCWGG	1 cut(s)	343
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	49, 58, 120, 556
NarI	GGCGCC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	5 cut(s)	88, 168, 219, 241, 464
NlaIV	GGNNCC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	241
PceI	AGGCCT	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	299
PkrI	GCNGC	5 cut(s)	8, 35, 45, 483, 552
PluTI	GGCGCC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SacII	CCGCGG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	5 cut(s)	7, 34, 44, 482, 551
Sau3AI	GATC	1 cut(s)	152
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	54, 343
SetI	ASST	6 cut(s)	93, 280, 335, 344, 512, 526
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	1 cut(s)	439
SfoI	GGCGCC	1 cut(s)	124
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SphI	GCATGC	1 cut(s)	241
Sse9I	AATT	2 cut(s)	260, 492
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	6 cut(s)	6, 44, 46, 129, 427, 551
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	52, 341
TaiI	ACGT	1 cut(s)	280
TasI	AATT	2 cut(s)	260, 492
TauI	GCSGC	3 cut(s)	9, 46, 553
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TseI	GCWGC	2 cut(s)	33, 481
TspDTI	ATGAA	3 cut(s)	101, 106, 267
TspGWI	ACGGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.