FvH4_2g32490

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007467
Physical Location & Seq
Forward (+)
24620807 .. 24623410
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32490.t4

Sequence Viewer

Length: 720 bp
ATGAGCGGCGACGACGATGACCGGAAACGGAGCAGCCAATGGCCGCGGACGCCGGAGAGGCCTTATCAGAACAAAGAGGAAGACATGAAGCTCTGGGGGATTTTCATCTTCGGCTTCATTGGCGCCACCGCAACTACTTTGGCGGTTTTTCAGCTACGTAGGACTGTTGATTGGGTCTATTCTCAGTTGTTCAGATCACAATCAACATGGAGAGGAGGGAGTGGTGGTACGCATCGGACGTCTTTCCAGGAGGAAGCGTGGAGAAGATATAATCGGCGCTTGCAAGAGGAGTATGAAGAAGAATTGGAGAGAGTGGAACGTATAAGGCGTATGCAGAGTGTGTTCAATAGAGAGAGGAACAAACACAAAAGGAGCTACGAGAGCTGGAGGGAAAATGGCCAGGGTCAATATCATCAACATTTCCAAAGAGATGATTGGTATTGGAAGACTGAGGCATCCTTCAAAGACAGAAGGAGTAACTACAGAGAAACTCCTAGAGAACATAGCAACTATTTGTTATCGCAGCACTACTCAATTTTAGGCCTTGACAGGTTTAGAAAAGCACCTTACACAGATGCTGAGATTAAGACAGCATTTAGGACCAAGGCAAAGGAATTTCACCCGGATCAAAACCAAGATAATAAAGAGGCTGCTGAAGCGAAGTTCAAAGAAGTGATGGTCTCATATGAGGCCATAAAGAAAGAGAGGGGAAACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

240

Amino Acids

29.09

Weight (kDa)

9.52

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 147 - 206 1.5e-12 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 1 cut(s) 46
AciI CCGC 5 cut(s) 6, 44, 46, 129, 143
AclWI GGATC 1 cut(s) 633
AcoI YGGCCR 2 cut(s) 41, 397
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 675
AcyI GRCGYC 3 cut(s) 50, 123, 239
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 3 cut(s) 346, 463, 667
AjnI CCWGG 2 cut(s) 246, 399
AluBI AGCT 4 cut(s) 91, 154, 375, 384
AluI AGCT 4 cut(s) 91, 154, 375, 384
Alw26I GTCTC 1 cut(s) 685
AlwI GGATC 1 cut(s) 633
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 5 cut(s) 41, 59, 397, 541, 690
ApeKI GCWGC 3 cut(s) 33, 523, 650
ApoI RAATTY 1 cut(s) 614
AspLEI GCGC 2 cut(s) 125, 279
AspS9I GGNCC 1 cut(s) 600
AsuC2I CCSGG 1 cut(s) 623
AsuHPI GGTGA 1 cut(s) 611
AvaII GGWCC 1 cut(s) 600
BalI TGGCCA 1 cut(s) 399
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 87, 452
BbvI GCAGC 3 cut(s) 45, 535, 637
BccI CCATC 1 cut(s) 670
BciT130I CCWGG 2 cut(s) 248, 401
BcnI CCSGG 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 481
BfoI RGCGCY 2 cut(s) 126, 280
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 5 cut(s) 7, 34, 44, 524, 651
BlsI GCNGC 5 cut(s) 8, 35, 45, 525, 652
Bme1390I CCNGG 3 cut(s) 248, 401, 623
Bme18I GGWCC 1 cut(s) 600
BmgT120I GGNCC 1 cut(s) 600
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 3 cut(s) 248, 401, 623
BmsI GCATC 3 cut(s) 241, 464, 565
BpiI GAAGAC 2 cut(s) 87, 452
BpmI CTGGAG 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 623
BsaAI YACGTR 1 cut(s) 158
BsaBI GATNNNNATC 2 cut(s) 104, 199
BsaHI GRCGYC 3 cut(s) 50, 123, 239
BsaI GGTCTC 1 cut(s) 685
BsaJI CCNNGG 3 cut(s) 44, 400, 603
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 211, 241, 242, 272
Bse8I GATNNNNATC 2 cut(s) 104, 199
BseBI CCWGG 2 cut(s) 248, 401
BseDI CCNNGG 3 cut(s) 44, 400, 603
BseGI GGATG 1 cut(s) 455
BseJI GATNNNNATC 2 cut(s) 104, 199
BseMII CTCAG 3 cut(s) 197, 441, 570
BseRI GAGGAG 2 cut(s) 228, 302
BseXI GCAGC 3 cut(s) 45, 535, 637
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 5 cut(s) 43, 61, 399, 543, 692
BshNI GGYRCC 1 cut(s) 122
BsiSI CCGG 3 cut(s) 22, 53, 623
BsmAI GTCTC 1 cut(s) 685
BsnI GGCC 5 cut(s) 43, 61, 399, 543, 692
Bso31I GGTCTC 1 cut(s) 685
Bsp143I GATC 2 cut(s) 194, 625
BspACI CCGC 5 cut(s) 6, 44, 46, 129, 143
BspANI GGCC 5 cut(s) 43, 61, 399, 543, 692
BspCNI CTCAG 3 cut(s) 196, 442, 571
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 633
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 685
BsrBI CCGCTC 1 cut(s) 6
BssECI CCNNGG 3 cut(s) 44, 400, 603
BssMI GATC 2 cut(s) 194, 625
BssNI GRCGYC 3 cut(s) 50, 123, 239
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 248, 401
Bst4CI ACNGT 1 cut(s) 166
BstACI GRCGYC 3 cut(s) 50, 123, 239
BstBAI YACGTR 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 3 cut(s) 183, 450, 579
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 455
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 2 cut(s) 126, 280
BstHHI GCGC 2 cut(s) 125, 279
BstKTI GATC 2 cut(s) 197, 628
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 2 cut(s) 194, 625
BstMWI GCNNNNNNNGC 5 cut(s) 49, 58, 120, 381, 656
BstNI CCWGG 2 cut(s) 248, 401
BstSCI CCNGG 3 cut(s) 246, 399, 621
BstSFI CTRYAG 1 cut(s) 481
BstSNI TACGTA 1 cut(s) 158
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 3 cut(s) 45, 535, 637
BstV2I GAAGAC 2 cut(s) 87, 452
BsuRI GGCC 5 cut(s) 43, 61, 399, 543, 692
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 2 cut(s) 125, 279
Cfr13I GGNCC 1 cut(s) 600
Cfr42I CCGCGG 1 cut(s) 47
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 228
CviAII CATG 3 cut(s) 85, 207, 717
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 3 cut(s) 183, 450, 579
DinI GGCGCC 1 cut(s) 124
DpnI GATC 2 cut(s) 196, 627
DpnII GATC 2 cut(s) 194, 625
EaeI YGGCCR 2 cut(s) 41, 397
Eco105I TACGTA 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 2 cut(s) 61, 543
Eco31I GGTCTC 1 cut(s) 685
Eco47I GGWCC 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 675
EcoRII CCWGG 2 cut(s) 246, 399
EcoT14I CCWWGG 1 cut(s) 603
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 3 cut(s) 88, 210, 720
FatI CATG 3 cut(s) 84, 206, 716
FauNDI CATATG 1 cut(s) 685
Fnu4HI GCNGC 5 cut(s) 7, 34, 44, 524, 651
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 5 cut(s) 7, 34, 44, 524, 651
FspBI CTAG 1 cut(s) 495
GlaI GCGC 2 cut(s) 124, 278
GluI GCNGC 5 cut(s) 7, 34, 44, 524, 651
GsuI CTGGAG 1 cut(s) 406
HaeII RGCGCY 2 cut(s) 126, 280
HaeIII GGCC 5 cut(s) 43, 61, 399, 543, 692
HapII CCGG 3 cut(s) 22, 53, 623
HgaI GACGC 1 cut(s) 58
HhaI GCGC 2 cut(s) 125, 279
Hin1I GRCGYC 3 cut(s) 50, 123, 239
Hin1II CATG 3 cut(s) 88, 210, 720
Hin6I GCGC 2 cut(s) 123, 277
HinP1I GCGC 2 cut(s) 123, 277
HpaII CCGG 3 cut(s) 22, 53, 623
HphI GGTGA 1 cut(s) 611
Hpy188I TCNGA 3 cut(s) 69, 194, 237
Hpy99I CGWCG 2 cut(s) 14, 17
HpyAV CCTTC 2 cut(s) 465, 469
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 3 cut(s) 157, 239, 319
HpyCH4V TGCA 2 cut(s) 283, 334
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 58, 120, 381, 656
HpyF3I CTNAG 3 cut(s) 183, 450, 579
HpySE526I ACGT 3 cut(s) 157, 239, 319
Hsp92I GRCGYC 3 cut(s) 50, 123, 239
Hsp92II CATG 3 cut(s) 88, 210, 720
HspAI GCGC 2 cut(s) 123, 277
KasI GGCGCC 1 cut(s) 122
KspI CCGCGG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 194, 625
LmnI GCTCC 2 cut(s) 30, 372
Lsp1109I GCAGC 3 cut(s) 45, 535, 637
LweI GCATC 3 cut(s) 241, 464, 565
MaeI CTAG 1 cut(s) 495
MaeII ACGT 3 cut(s) 157, 239, 319
MaeIII GTNAC 1 cut(s) 476
MalI GATC 2 cut(s) 196, 627
MbiI CCGCTC 1 cut(s) 6
MboI GATC 2 cut(s) 194, 625
MboII GAAGA 6 cut(s) 92, 100, 276, 308, 311, 457
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 3 cut(s) 302, 534, 614
MluNI TGGCCA 1 cut(s) 399
Mly113I GGCGCC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 399
MscI TGGCCA 1 cut(s) 399
MseI TTAA 1 cut(s) 585
Msp20I TGGCCA 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 3 cut(s) 22, 53, 623
MspR9I CCNGG 3 cut(s) 248, 401, 623
MvaI CCWGG 2 cut(s) 248, 401
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 5 cut(s) 49, 58, 120, 381, 656
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 1 cut(s) 623
NdeI CATATG 1 cut(s) 685
NdeII GATC 2 cut(s) 194, 625
NlaIII CATG 3 cut(s) 88, 210, 720
NlaIV GGNNCC 1 cut(s) 124
PceI AGGCCT 2 cut(s) 61, 543
PcsI WCGNNNNNNNCGW 2 cut(s) 236, 325
PfoI TCCNGGA 1 cut(s) 246
PkrI GCNGC 5 cut(s) 8, 35, 45, 525, 652
PluTI GGCGCC 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 246, 399
PspGI CCWGG 2 cut(s) 246, 399
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 600
PstNI CAGNNNCTG 1 cut(s) 578
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SacII CCGCGG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 5 cut(s) 7, 34, 44, 524, 651
Sau3AI GATC 2 cut(s) 194, 625
Sau96I GGNCC 1 cut(s) 600
ScrFI CCNGG 3 cut(s) 248, 401, 623
SetI ASST 9 cut(s) 93, 156, 160, 242, 322, 377, 386, 554, 568
SfaNI GCATC 3 cut(s) 241, 464, 565
SfcI CTRYAG 1 cut(s) 481
SfoI GGCGCC 1 cut(s) 124
Sfr303I CCGCGG 1 cut(s) 47
SgrBI CCGCGG 1 cut(s) 47
SinI GGWCC 1 cut(s) 600
SnaBI TACGTA 1 cut(s) 158
Sse9I AATT 3 cut(s) 302, 534, 614
SseBI AGGCCT 2 cut(s) 61, 543
SsiI CCGC 5 cut(s) 6, 44, 46, 129, 143
SspDI GGCGCC 1 cut(s) 122
SspMI CTAG 1 cut(s) 495
StuI AGGCCT 2 cut(s) 61, 543
StyD4I CCNGG 3 cut(s) 246, 399, 621
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 3 cut(s) 160, 242, 322
TasI AATT 3 cut(s) 302, 534, 614
TauI GCSGC 2 cut(s) 9, 46
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TseI GCWGC 3 cut(s) 33, 523, 650
TspDTI ATGAA 4 cut(s) 94, 101, 106, 309
TspGWI ACGGA 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 600
XapI RAATTY 1 cut(s) 614
XspI CTAG 1 cut(s) 495
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.