Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007467

Physical Location & Seq

Genomic Coordinates Reverse (-)

70102424 .. 70105689

Gene Structure 3266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG501600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGCGGCGACGATGATAACCTGAAACGGAGCAGCCAATGGCCGCGGTCGCCGGGCAGGCCCTATCAGAACAAAGAGGAAGACATGAAGCTCTGGGGGATTTTCGTCTTTGGCTTCATTGGCGCCACCGCAACTACTTTGGCGGTTTTTCAGCTTCGTAGGACTGTTGATTGGGTCTATACTCAGTTGTTCAGATCACAGTCGTCATCATGGAGAGGTGGTACAAGTCGGACATCTTTTCAGGAGGAAGCATGGAAAAGATATAATCGGCGCATGCAGGAGGAGTATGAAGAAGAATTGGAGAGAGTGGAACGTATAAGGCGTATGCAGAATGTGTTCAATAGAGAGAGGAACAAATACAAAAGGAGCTATGAGACCTGGAGGGAAAATGGTCAGGGTCAATATCATCAACATTTCCAAAGAGAGGATTGGTATTGGAAGACTGAGACATCCTTCAAAGACCGGAGGAGTAACTACAGGGAAACTCCTAGAGAACATGCCAACTATTTGTTATCGCAGCACTACTCAATTTTAGGCCTTGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

182

Amino Acids

22.48

Weight (kDa)

9.65

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07990 AT4G07990 AT4G07990
fragaria_vesca	FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490
malus_domestica	MD08G1076700.v1.1 MD15G1064000.v1.1
prunus_persica	Prupe.1G418000_v2.0.a1 Prupe.1G418000_v2.0.a1
pyrus_communis	pycom08g06350 pycom15g06070
rosa_chinensis	RchiOBHm_Chr6g0310161
rosa_laevigata	RLG00000010503
rosa_multiflora	Rmu_sc0008163.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158800
rosa_rugosa	Rorug06G0377900 Rorug06G0378000 Rorug06G0378000
rosa_samantha	Rh6AG492000 Rh6BG501600 Rh6DG492600
rosa_wichuraiana	Rw6G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	1 cut(s)	46
AciI	CCGC	5 cut(s)	6, 44, 46, 129, 143
AcoI	YGGCCR	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	340, 457
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	3 cut(s)	91, 154, 369
AluI	AGCT	3 cut(s)	91, 154, 369
Alw26I	GTCTC	2 cut(s)	368, 440
AoxI	GGCC	3 cut(s)	41, 59, 535
ApeKI	GCWGC	2 cut(s)	33, 517
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	2 cut(s)	125, 273
AspS9I	GGNCC	1 cut(s)	60
AsuC2I	CCSGG	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	87, 446
BbvI	GCAGC	2 cut(s)	45, 529
BciT130I	CCWGG	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	368, 440
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	475
BfoI	RGCGCY	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	58
BisI	GCNGC	4 cut(s)	7, 34, 44, 518
BlsI	GCNGC	4 cut(s)	8, 35, 45, 519
Bme1390I	CCNGG	2 cut(s)	54, 379
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	54, 379
BpiI	GAAGAC	2 cut(s)	87, 446
BpmI	CTGGAG	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	197, 435
BseRI	GAGGAG	2 cut(s)	296, 481
BseXI	GCAGC	2 cut(s)	45, 529
Bsh1236I	CGCG	1 cut(s)	46
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	43, 61, 537
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	53, 463
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	2 cut(s)	368, 440
BsnI	GGCC	3 cut(s)	43, 61, 537
Bso31I	GGTCTC	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	194
BspACI	CCGC	5 cut(s)	6, 44, 46, 129, 143
BspANI	GGCC	3 cut(s)	43, 61, 537
BspCNI	CTCAG	2 cut(s)	196, 436
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	1 cut(s)	194
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	166, 201
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	59, 275
BstDEI	CTNAG	2 cut(s)	183, 444
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	449
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	125, 273
BstKTI	GATC	1 cut(s)	197
BstMAI	GTCTC	2 cut(s)	368, 440
BstMBI	GATC	1 cut(s)	194
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 58, 120
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	2 cut(s)	277, 500
BstSCI	CCNGG	2 cut(s)	52, 377
BstSFI	CTRYAG	1 cut(s)	475
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	45, 529
BstV2I	GAAGAC	2 cut(s)	87, 446
BsuRI	GGCC	3 cut(s)	43, 61, 537
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	59, 275
CfoI	GCGC	2 cut(s)	125, 273
Cfr13I	GGNCC	1 cut(s)	60
Cfr42I	CCGCGG	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	5 cut(s)	85, 210, 252, 274, 497
CviJI	RGCY	8 cut(s)	36, 43, 61, 91, 114, 154, 369, 537
CviKI_1	RGCY	8 cut(s)	36, 43, 61, 91, 114, 154, 369, 537
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	183, 444
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	377
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaeI	CATG	5 cut(s)	88, 213, 255, 277, 500
FatI	CATG	5 cut(s)	84, 209, 251, 273, 496
Fnu4HI	GCNGC	4 cut(s)	7, 34, 44, 518
FokI	GGATG	1 cut(s)	436
Fsp4HI	GCNGC	4 cut(s)	7, 34, 44, 518
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	2 cut(s)	124, 272
GluI	GCNGC	4 cut(s)	7, 34, 44, 518
GsuI	CTGGAG	1 cut(s)	400
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	43, 61, 537
HapII	CCGG	2 cut(s)	53, 463
HhaI	GCGC	2 cut(s)	125, 273
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	88, 213, 255, 277, 500
Hin6I	GCGC	2 cut(s)	123, 271
HinP1I	GCGC	2 cut(s)	123, 271
HpaII	CCGG	2 cut(s)	53, 463
Hpy188I	TCNGA	3 cut(s)	69, 194, 231
Hpy188III	TCNNGA	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	2 cut(s)	166, 201
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	277, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 58, 120
HpyF3I	CTNAG	2 cut(s)	183, 444
HpySE526I	ACGT	1 cut(s)	313
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	88, 213, 255, 277, 500
HspAI	GCGC	2 cut(s)	123, 271
KasI	GGCGCC	1 cut(s)	122
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	1 cut(s)	194
LmnI	GCTCC	2 cut(s)	30, 366
Lsp1109I	GCAGC	2 cut(s)	45, 529
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	1 cut(s)	196
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	1 cut(s)	194
MboII	GAAGA	4 cut(s)	92, 302, 305, 451
MluCI	AATT	2 cut(s)	296, 528
Mly113I	GGCGCC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	8 cut(s)	70, 209, 238, 274, 342, 375, 418, 459
MroXI	GAANNNNTTC	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	2 cut(s)	53, 463
MspR9I	CCNGG	2 cut(s)	54, 379
MvaI	CCWGG	1 cut(s)	379
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	49, 58, 120
NarI	GGCGCC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	194
NlaIII	CATG	5 cut(s)	88, 213, 255, 277, 500
NlaIV	GGNNCC	1 cut(s)	124
NspI	RCATGY	2 cut(s)	277, 500
PaeI	GCATGC	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	8, 35, 45, 519
PluTI	GGCGCC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SacII	CCGCGG	1 cut(s)	47
SatI	GCNGC	4 cut(s)	7, 34, 44, 518
Sau3AI	GATC	1 cut(s)	194
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	54, 379
SetI	ASST	8 cut(s)	24, 93, 156, 220, 316, 371, 380, 548
SfcI	CTRYAG	1 cut(s)	475
SfoI	GGCGCC	1 cut(s)	124
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SphI	GCATGC	1 cut(s)	277
Sse9I	AATT	2 cut(s)	296, 528
SseBI	AGGCCT	1 cut(s)	537
SsiI	CCGC	5 cut(s)	6, 44, 46, 129, 143
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	489
StuI	AGGCCT	1 cut(s)	537
StyD4I	CCNGG	2 cut(s)	52, 377
TaaI	ACNGT	2 cut(s)	166, 201
TaiI	ACGT	1 cut(s)	316
TasI	AATT	2 cut(s)	296, 528
TauI	GCSGC	2 cut(s)	9, 46
TseI	GCWGC	2 cut(s)	33, 517
TspDTI	ATGAA	3 cut(s)	101, 106, 303
TspGWI	ACGGA	1 cut(s)	43
XceI	RCATGY	2 cut(s)	277, 500
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.