Rroxscaffold_7G00158800

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007467
Physical Location & Seq
Forward (+)
2114916 .. 2117674
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158800.1

Sequence Viewer

Length: 750 bp
ATGAGCGGCGACGATGATAACCGGAAACGGAGCAGCCAATGGCCGCGGTCGCCGGGCAGGCCCTATCAGAACAAAGAGGAAGACATGAAGCTCTGGGGGATTTTCGTCTTTGGCTTCATTGGCGCCACCGCAACTACTTTGGCGGTTTTTCAGCTTCGTAGGACTGTTGATTGGGTCTATACTCAGTTGTTCAGATCACAATCATCATGGAGAGGAGGGAGTGGTGGTACAAGTCGGACATCTTTTCAGGAGGAAGCGTGGAAAAGGTATAATCGGCGCATGCAGGAGGAGTATGAAGAAGAATTGGAGAGAGTGGAACGCATCAGGCGTATGCAGAATGTGTTCAATAGAGAGAGGAACAAATACAAAAGGAGCTATGAGACCTGGAGGGAAAATGGTCAGGGTCAGTATCATCAACATTTCCAAAGAGAGGATTGGTATTGGAAGACTGAGACATCCTTCAAAGATCGGAGGAGTAACTACAGGGAAACTCCTAGAGAACATGGCAACTATTTGTTATCGCAGCACTACTCAATTTTAGGCCTTGACAGGTTTAGAAAAGCACCTTACACAGATGCTGAGATTAAGACAGCATTTAGGACCAAGGCAAAGGAATTTCACCCAGATCAAAACCAAGATAATAAAGAGGCCGCTGAAGCAAAGTTCAAAGAAGTAATGGTGTCCTATGAGGCCATAAAGAAGGAGAGGGAAACCTATGAATCTATGAATTTGTTGGGTACAGATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

249

Amino Acids

30.21

Weight (kDa)

9.37

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 176 - 236 2.2e-12 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccBSI CCGCTC 1 cut(s) 6
AccII CGCG 1 cut(s) 46
AciI CCGC 6 cut(s) 6, 44, 46, 129, 143, 651
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 2 cut(s) 614, 727
AcuI CTGAAG 1 cut(s) 675
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 229, 739
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 3 cut(s) 346, 463, 667
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 3 cut(s) 91, 154, 375
AluI AGCT 3 cut(s) 91, 154, 375
Alw26I GTCTC 2 cut(s) 374, 446
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 5 cut(s) 41, 59, 541, 648, 690
ApeKI GCWGC 2 cut(s) 33, 523
ApoI RAATTY 2 cut(s) 614, 727
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 125, 279
AspS9I GGNCC 2 cut(s) 60, 600
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 611
AvaII GGWCC 1 cut(s) 600
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 87, 452
BbvI GCAGC 2 cut(s) 45, 535
BciT130I CCWGG 1 cut(s) 385
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 374, 446
BfaI CTAG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 481
BfoI RGCGCY 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 5 cut(s) 7, 34, 44, 524, 651
BlsI GCNGC 5 cut(s) 8, 35, 45, 525, 652
Bme1390I CCNGG 2 cut(s) 54, 385
Bme18I GGWCC 1 cut(s) 600
BmgT120I GGNCC 2 cut(s) 60, 600
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 54, 385
BmsI GCATC 2 cut(s) 330, 565
BpiI GAAGAC 2 cut(s) 87, 452
BpmI CTGGAG 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 44, 603
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 4 cut(s) 211, 241, 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse8I GATNNNNATC 1 cut(s) 199
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 44, 603
BseGI GGATG 1 cut(s) 455
BseJI GATNNNNATC 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 3 cut(s) 197, 441, 570
BseRI GAGGAG 3 cut(s) 228, 302, 487
BseXI GCAGC 2 cut(s) 45, 535
Bsh1236I CGCG 1 cut(s) 46
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 5 cut(s) 43, 61, 543, 650, 692
BshNI GGYRCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 50
BsiSI CCGG 2 cut(s) 22, 53
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 2 cut(s) 374, 446
BsnI GGCC 5 cut(s) 43, 61, 543, 650, 692
Bso31I GGTCTC 1 cut(s) 374
Bsp143I GATC 3 cut(s) 194, 466, 625
BspACI CCGC 6 cut(s) 6, 44, 46, 129, 143, 651
BspANI GGCC 5 cut(s) 43, 61, 543, 650, 692
BspCNI CTCAG 3 cut(s) 196, 442, 571
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 6
BssECI CCNNGG 2 cut(s) 44, 603
BssMI GATC 3 cut(s) 194, 466, 625
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 59, 281
BstDEI CTNAG 3 cut(s) 183, 450, 579
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 455
BstFNI CGCG 1 cut(s) 46
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 2 cut(s) 125, 279
BstKTI GATC 3 cut(s) 197, 469, 628
BstMAI GTCTC 2 cut(s) 374, 446
BstMBI GATC 3 cut(s) 194, 466, 625
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 4 cut(s) 49, 58, 120, 656
BstNI CCWGG 1 cut(s) 385
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 52, 383
BstSFI CTRYAG 1 cut(s) 481
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 45, 535
BstV2I GAAGAC 2 cut(s) 87, 452
BsuRI GGCC 5 cut(s) 43, 61, 543, 650, 692
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 455
Cac8I GCNNGC 2 cut(s) 59, 281
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 2 cut(s) 125, 279
Cfr13I GGNCC 2 cut(s) 60, 600
Cfr42I CCGCGG 1 cut(s) 47
Csp6I GTAC 2 cut(s) 228, 738
CviAII CATG 4 cut(s) 85, 207, 280, 503
CviQI GTAC 2 cut(s) 228, 738
DdeI CTNAG 3 cut(s) 183, 450, 579
DinI GGCGCC 1 cut(s) 124
DpnI GATC 3 cut(s) 196, 468, 627
DpnII GATC 3 cut(s) 194, 466, 625
EaeI YGGCCR 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 543
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 675
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 603
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 4 cut(s) 88, 210, 283, 506
FatI CATG 4 cut(s) 84, 206, 279, 502
Fnu4HI GCNGC 5 cut(s) 7, 34, 44, 524, 651
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 5 cut(s) 7, 34, 44, 524, 651
FspBI CTAG 1 cut(s) 495
GlaI GCGC 2 cut(s) 124, 278
GluI GCNGC 5 cut(s) 7, 34, 44, 524, 651
GsuI CTGGAG 1 cut(s) 406
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 5 cut(s) 43, 61, 543, 650, 692
HapII CCGG 2 cut(s) 22, 53
HhaI GCGC 2 cut(s) 125, 279
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 4 cut(s) 88, 210, 283, 506
Hin6I GCGC 2 cut(s) 123, 277
HinP1I GCGC 2 cut(s) 123, 277
HinfI GANTC 1 cut(s) 719
HpaII CCGG 2 cut(s) 22, 53
HphI GGTGA 1 cut(s) 611
Hpy188I TCNGA 4 cut(s) 69, 194, 237, 471
Hpy188III TCNNGA 1 cut(s) 248
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 469, 694
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 283, 334
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 58, 120, 656
HpyF3I CTNAG 3 cut(s) 183, 450, 579
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 4 cut(s) 88, 210, 283, 506
HspAI GCGC 2 cut(s) 123, 277
KasI GGCGCC 1 cut(s) 122
KspI CCGCGG 1 cut(s) 47
Kzo9I GATC 3 cut(s) 194, 466, 625
LmnI GCTCC 2 cut(s) 30, 372
Lsp1109I GCAGC 2 cut(s) 45, 535
LweI GCATC 2 cut(s) 330, 565
MaeI CTAG 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 476
MalI GATC 3 cut(s) 196, 468, 627
MbiI CCGCTC 1 cut(s) 6
MboI GATC 3 cut(s) 194, 466, 625
MboII GAAGA 4 cut(s) 92, 308, 311, 457
MluCI AATT 4 cut(s) 302, 534, 614, 727
Mly113I GGCGCC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 1 cut(s) 585
MspA1I CMGCKG 2 cut(s) 46, 653
MspI CCGG 2 cut(s) 22, 53
MspR9I CCNGG 2 cut(s) 54, 385
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 4 cut(s) 49, 58, 120, 656
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 1 cut(s) 54
NdeII GATC 3 cut(s) 194, 466, 625
NlaIII CATG 4 cut(s) 88, 210, 283, 506
NlaIV GGNNCC 1 cut(s) 124
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PceI AGGCCT 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 719
PkrI GCNGC 5 cut(s) 8, 35, 45, 525, 652
PluTI GGCGCC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 60, 600
PstNI CAGNNNCTG 1 cut(s) 578
RsaI GTAC 2 cut(s) 229, 739
RsaNI GTAC 2 cut(s) 228, 738
SacII CCGCGG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 5 cut(s) 7, 34, 44, 524, 651
Sau3AI GATC 3 cut(s) 194, 466, 625
Sau96I GGNCC 2 cut(s) 60, 600
ScrFI CCNGG 2 cut(s) 54, 385
SetI ASST 8 cut(s) 93, 156, 269, 377, 386, 554, 568, 716
SfaNI GCATC 2 cut(s) 330, 565
SfcI CTRYAG 1 cut(s) 481
SfoI GGCGCC 1 cut(s) 124
Sfr303I CCGCGG 1 cut(s) 47
SgrBI CCGCGG 1 cut(s) 47
SinI GGWCC 1 cut(s) 600
SphI GCATGC 1 cut(s) 283
Sse9I AATT 4 cut(s) 302, 534, 614, 727
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 6 cut(s) 6, 44, 46, 129, 143, 651
SspDI GGCGCC 1 cut(s) 122
SspMI CTAG 1 cut(s) 495
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 52, 383
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 166
TasI AATT 4 cut(s) 302, 534, 614, 727
TauI GCSGC 3 cut(s) 9, 46, 653
TfiI GAWTC 1 cut(s) 719
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TseI GCWGC 2 cut(s) 33, 523
TspDTI ATGAA 5 cut(s) 101, 106, 309, 732, 740
TspGWI ACGGA 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 600
XapI RAATTY 2 cut(s) 614, 727
XceI RCATGY 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.