Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007467

Physical Location & Seq

Genomic Coordinates Forward (+)

36244161 .. 36247167

Gene Structure 3007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G418000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGCGACGACGATGGTAATCGGAATAGGAATAAGAATGGCCCGCGGACGCCGCCAAACAGACCCTACCAGGAGAGAGAGGAAGACATGAAGATTTGGGGAATTCTGGTGTTTGGTCTAATTGGCGCCACCGCCACCACTCTCGCGGTTTCTCAGCTTCGTAGGACTGTTGATTGGGTCTATACTCAGTTGTTCAGATCACAATCATCGTGGAAAGGAGGAAGCGGTAGTTCATTCCGGACATCCTTTCAGGAGGAAGCATGGAAAAAATATAATCGTCGCATGCAAGAGGAGTATGAGGAAGAACTGGAGAGAGTGGAACGTATTAGGCGTATGCAAAGTGTGTTCAATAGAGAGAGGAACAAATATAAAAGCAGCTATGAGAGCTGGAGGGAAAATGGTCAAGGTGCATACCATCAACATTTCCAGCGAGAAGATTGGTATTGGAAAACTGATACATCCTTCAAAGACCGGAGGAATAATTACAGGAAGACTCCTAGGGAAAATGCAAGCTATTTATTATCGCATCATTACTCAGTATTAGGCCTTGACAGGTTTAGAAAGGCACCTTACACGGATGCTGAGATTAAGACAGCGTTTAGGACTAAGGCAAAGCAATTTCACCCAGATCAAAACCAAGATAATAAAGAGGCTGCTGAAGCAAAGTTTAAAGAGGTAATGACGTCCTACGAGGCCATAAAGAAAGAGAGGGGAAACACGAATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

243

Amino Acids

29.06

Weight (kDa)

9.65

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07990 AT4G07990 AT4G07990
fragaria_vesca	FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490
malus_domestica	MD08G1076700.v1.1 MD15G1064000.v1.1
prunus_persica	Prupe.1G418000_v2.0.a1 Prupe.1G418000_v2.0.a1
pyrus_communis	pycom08g06350 pycom15g06070
rosa_chinensis	RchiOBHm_Chr6g0310161
rosa_laevigata	RLG00000010503
rosa_multiflora	Rmu_sc0008163.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158800
rosa_rugosa	Rorug06G0377900 Rorug06G0378000 Rorug06G0378000
rosa_samantha	Rh6AG492000 Rh6BG501600 Rh6DG492600
rosa_wichuraiana	Rw6G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	686
AccB1I	GGYRCC	2 cut(s)	125, 565
AccII	CGCG	2 cut(s)	46, 146
AccIII	TCCGGA	1 cut(s)	237
AciI	CCGC	6 cut(s)	44, 46, 53, 132, 146, 225
AcsI	RAATTY	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	678
AcyI	GRCGYC	3 cut(s)	50, 126, 683
AgsI	TTSAA	2 cut(s)	349, 466
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	4 cut(s)	157, 378, 387, 513
AluI	AGCT	4 cut(s)	157, 378, 387, 513
Aor13HI	TCCGGA	1 cut(s)	237
AoxI	GGCC	3 cut(s)	40, 544, 693
ApeKI	GCWGC	2 cut(s)	375, 653
ApoI	RAATTY	1 cut(s)	102
AspA2I	CCTAGG	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	614
AvrII	CCTAGG	1 cut(s)	497
BanI	GGYRCC	2 cut(s)	125, 565
BbsI	GAAGAC	2 cut(s)	90, 497
BbvI	GCAGC	2 cut(s)	387, 640
BccI	CCATC	2 cut(s)	8, 423
BciT130I	CCWGG	1 cut(s)	71
BfaI	CTAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	3 cut(s)	53, 376, 654
BlnI	CCTAGG	1 cut(s)	497
BlsI	GCNGC	3 cut(s)	54, 377, 655
Bme1390I	CCNGG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	127, 567
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	535, 568
BpiI	GAAGAC	2 cut(s)	90, 497
BpmI	CTGGAG	2 cut(s)	329, 409
BsaBI	GATNNNNATC	2 cut(s)	18, 202
BsaHI	GRCGYC	3 cut(s)	50, 126, 683
BsaJI	CCNNGG	2 cut(s)	44, 497
BsaWI	WCCGGW	2 cut(s)	237, 471
Bse1I	ACTGG	1 cut(s)	312
Bse8I	GATNNNNATC	2 cut(s)	18, 202
BseAI	TCCGGA	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	44, 497
BseGI	GGATG	3 cut(s)	242, 458, 583
BseJI	GATNNNNATC	2 cut(s)	18, 202
BseMII	CTCAG	4 cut(s)	167, 200, 549, 573
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	387, 640
Bsh1236I	CGCG	2 cut(s)	46, 146
BshFI	GGCC	3 cut(s)	42, 546, 695
BshNI	GGYRCC	2 cut(s)	125, 565
BsiSI	CCGG	2 cut(s)	238, 472
BsnI	GGCC	3 cut(s)	42, 546, 695
Bsp13I	TCCGGA	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	197, 628
BspACI	CCGC	6 cut(s)	44, 46, 53, 132, 146, 225
BspANI	GGCC	3 cut(s)	42, 546, 695
BspCNI	CTCAG	4 cut(s)	166, 199, 548, 574
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	2 cut(s)	46, 146
BspLI	GGNNCC	2 cut(s)	127, 567
BspT107I	GGYRCC	2 cut(s)	125, 565
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	44, 497
BssMI	GATC	2 cut(s)	197, 628
BssNI	GRCGYC	3 cut(s)	50, 126, 683
BssT1I	CCWWGG	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	169
BstACI	GRCGYC	3 cut(s)	50, 126, 683
BstC8I	GCNNGC	3 cut(s)	44, 284, 511
BstDEI	CTNAG	5 cut(s)	153, 186, 535, 582, 606
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	3 cut(s)	242, 458, 583
BstFNI	CGCG	2 cut(s)	46, 146
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	2 cut(s)	200, 631
BstMBI	GATC	2 cut(s)	197, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 384, 659
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	2 cut(s)	46, 146
BstV1I	GCAGC	2 cut(s)	387, 640
BstV2I	GAAGAC	2 cut(s)	90, 497
BsuRI	GGCC	3 cut(s)	42, 546, 695
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	242, 458, 583
Cac8I	GCNNGC	3 cut(s)	44, 284, 511
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	41
Cfr42I	CCGCGG	1 cut(s)	47
CseI	GACGC	1 cut(s)	58
CspCI	CAANNNNNGTGG	2 cut(s)	191, 226
CviAII	CATG	3 cut(s)	88, 261, 283
CviJI	RGCY	8 cut(s)	42, 157, 378, 387, 513, 546, 653, 695
CviKI_1	RGCY	8 cut(s)	42, 157, 378, 387, 513, 546, 653, 695
DdeI	CTNAG	5 cut(s)	153, 186, 535, 582, 606
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	2 cut(s)	199, 630
DpnII	GATC	2 cut(s)	197, 628
DraI	TTTAAA	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	497
Eco147I	AGGCCT	1 cut(s)	546
Eco57I	CTGAAG	1 cut(s)	678
EcoRI	GAATTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	497
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	3 cut(s)	91, 264, 286
FatI	CATG	3 cut(s)	87, 260, 282
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	53, 376, 654
FokI	GGATG	3 cut(s)	229, 445, 590
Fsp4HI	GCNGC	3 cut(s)	53, 376, 654
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	3 cut(s)	53, 376, 654
GsuI	CTGGAG	2 cut(s)	329, 409
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	3 cut(s)	42, 546, 695
HapII	CCGG	2 cut(s)	238, 472
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	3 cut(s)	50, 126, 683
Hin1II	CATG	3 cut(s)	91, 264, 286
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	493, 721
HpaII	CCGG	2 cut(s)	238, 472
HphI	GGTGA	1 cut(s)	614
Hpy188I	TCNGA	2 cut(s)	24, 197
Hpy188III	TCNNGA	2 cut(s)	238, 251
Hpy99I	CGWCG	3 cut(s)	11, 14, 282
HpyAV	CCTTC	1 cut(s)	472
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	2 cut(s)	322, 683
HpyCH4V	TGCA	4 cut(s)	286, 337, 410, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 384, 659
HpyF3I	CTNAG	5 cut(s)	153, 186, 535, 582, 606
HpySE526I	ACGT	2 cut(s)	322, 683
Hsp92I	GRCGYC	3 cut(s)	50, 126, 683
Hsp92II	CATG	3 cut(s)	91, 264, 286
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	237
KspI	CCGCGG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	197, 628
Lsp1109I	GCAGC	2 cut(s)	387, 640
LweI	GCATC	2 cut(s)	535, 568
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	2 cut(s)	322, 683
MalI	GATC	2 cut(s)	199, 630
MboI	GATC	2 cut(s)	197, 628
MboII	GAAGA	5 cut(s)	95, 103, 314, 446, 502
MluCI	AATT	4 cut(s)	102, 120, 481, 617
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	487
MroI	TCCGGA	1 cut(s)	237
MseI	TTAA	2 cut(s)	588, 669
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	2 cut(s)	238, 472
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	46, 146
MwoI	GCNNNNNNNGC	3 cut(s)	52, 384, 659
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	2 cut(s)	197, 628
NlaIII	CATG	3 cut(s)	91, 264, 286
NlaIV	GGNNCC	2 cut(s)	127, 567
NspI	RCATGY	1 cut(s)	286
PaeI	GCATGC	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	721
PkrI	GCNGC	3 cut(s)	54, 377, 655
PleI	GAGTC	1 cut(s)	487
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	127, 567
PspPI	GGNCC	1 cut(s)	41
SacII	CCGCGG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	588, 669
SatI	GCNGC	3 cut(s)	53, 376, 654
Sau3AI	GATC	2 cut(s)	197, 628
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	71
SfaNI	GCATC	2 cut(s)	535, 568
SfoI	GGCGCC	1 cut(s)	127
Sfr303I	CCGCGG	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	47
SphI	GCATGC	1 cut(s)	286
Sse9I	AATT	4 cut(s)	102, 120, 481, 617
SseBI	AGGCCT	1 cut(s)	546
SsiI	CCGC	6 cut(s)	44, 46, 53, 132, 146, 225
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	498
StuI	AGGCCT	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	2 cut(s)	325, 686
TasI	AATT	4 cut(s)	102, 120, 481, 617
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	2 cut(s)	588, 669
Tru9I	TTAA	2 cut(s)	588, 669
TseI	GCWGC	2 cut(s)	375, 653
TspDTI	ATGAA	2 cut(s)	104, 222
TspGWI	ACGGA	1 cut(s)	590
XapI	RAATTY	1 cut(s)	102
XceI	RCATGY	1 cut(s)	286
XmaJI	CCTAGG	1 cut(s)	497
XspI	CTAG	1 cut(s)	498
ZraI	GACGTC	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.