Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007467

Physical Location & Seq

Genomic Coordinates Forward (+)

4919941 .. 4920781

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGGCGTCCGTCCCCAACACCATTTCCATTGAGAAGTCGAGAGACAGTCGTATACAAAGGCGGTGTAAACCAAAAAGAAGGGGAAGAACCCCAACCATGGTTGCTGGGTTTCCTGAACATTTACAATCTGCAAAGAGTAAGAATTGCTGAATTCGATACCGAAAGTTTGAGAATTTCCGGGAAAATGAGCGGCAGCGACGATGACTGTGATCGGAGCAGGAATAGGAATGGACCGTGGACTCCGCCAGGCAGACCGTACGAGGCAAAAGCGGAAGACATGAAGATTTGGGGGATTCTGGTGTTTGGTCTAATTGGCGCCACCGCCACCACTCTCGCCATCGCCATCAACGGGGAGACGAAGTGGCAGTTCATTCCGGACATCTTTTCAGGAGGAAGCATGGAAAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

138

Amino Acids

15.39

Weight (kDa)

7.84

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07990 AT4G07990 AT4G07990
fragaria_vesca	FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490
malus_domestica	MD08G1076700.v1.1 MD15G1064000.v1.1
prunus_persica	Prupe.1G418000_v2.0.a1 Prupe.1G418000_v2.0.a1
pyrus_communis	pycom08g06350 pycom15g06070
rosa_chinensis	RchiOBHm_Chr6g0310161
rosa_laevigata	RLG00000010503
rosa_multiflora	Rmu_sc0008163.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158800
rosa_rugosa	Rorug06G0377900 Rorug06G0378000 Rorug06G0378000
rosa_samantha	Rh6AG492000 Rh6BG501600 Rh6DG492600
rosa_wichuraiana	Rw6G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	317
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	5 cut(s)	63, 192, 245, 272, 324
AcsI	RAATTY	2 cut(s)	152, 174
AcyI	GRCGYC	2 cut(s)	7, 318
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	99, 351
AjnI	CCWGG	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	38, 350
Aor13HI	TCCGGA	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	152, 174
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	2 cut(s)	347, 353
BciT130I	CCWGG	1 cut(s)	249
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	38, 350
BfoI	RGCGCY	1 cut(s)	321
BisI	GCNGC	2 cut(s)	193, 196
BlsI	GCNGC	2 cut(s)	194, 197
Bme1390I	CCNGG	2 cut(s)	181, 249
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	181, 249
BpiI	GAAGAC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	181
BsaHI	GRCGYC	2 cut(s)	7, 318
BsaJI	CCNNGG	2 cut(s)	98, 236
BsaWI	WCCGGW	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 351
BseAI	TCCGGA	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	98, 236
BseLI	CCNNNNNNNGG	2 cut(s)	99, 351
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	180, 377
BsiWI	CGTACG	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	99, 351
BsmAI	GTCTC	2 cut(s)	38, 350
BsmBI	CGTCTC	1 cut(s)	350
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	98
BspACI	CCGC	5 cut(s)	63, 192, 245, 272, 324
BspEI	TCCGGA	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	98, 236
BssMI	GATC	1 cut(s)	211
BssNAI	GTATAC	1 cut(s)	55
BssNI	GRCGYC	2 cut(s)	7, 318
BssT1I	CCWWGG	1 cut(s)	98
Bst1107I	GTATAC	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	4 cut(s)	49, 209, 237, 258
BstACI	GRCGYC	2 cut(s)	7, 318
BstDSI	CCRYGG	2 cut(s)	98, 236
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	2 cut(s)	38, 350
BstMBI	GATC	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	179, 247
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	282
BstZ17I	GTATAC	1 cut(s)	55
BtgI	CCRYGG	2 cut(s)	98, 236
BtgZI	GCGATG	1 cut(s)	325
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	99, 280, 400
CviQI	GTAC	1 cut(s)	259
DinI	GGCGCC	1 cut(s)	319
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EciI	GGCGGA	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	98
EgeI	GGCGCC	1 cut(s)	319
EheI	GGCGCC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	98
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	3 cut(s)	102, 283, 403
FaiI	YATR	5 cut(s)	55, 100, 281, 401, 412
FatI	CATG	3 cut(s)	98, 279, 399
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	193, 196
Fsp4HI	GCNGC	2 cut(s)	193, 196
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	2 cut(s)	193, 196
GsaI	CCCAGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	321
HapII	CCGG	2 cut(s)	180, 377
HhaI	GCGC	1 cut(s)	320
Hin1I	GRCGYC	2 cut(s)	7, 318
Hin1II	CATG	3 cut(s)	102, 283, 403
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HinfI	GANTC	2 cut(s)	241, 295
HpaII	CCGG	2 cut(s)	180, 377
Hpy166II	GTNNAC	3 cut(s)	55, 70, 240
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	4 cut(s)	41, 115, 377, 390
Hpy8I	GTNNAC	3 cut(s)	55, 70, 240
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	74
HpyCH4III	ACNGT	4 cut(s)	49, 209, 237, 258
HpyCH4V	TGCA	1 cut(s)	133
Hsp92I	GRCGYC	2 cut(s)	7, 318
Hsp92II	CATG	3 cut(s)	102, 283, 403
HspAI	GCGC	1 cut(s)	318
KasI	GGCGCC	1 cut(s)	317
Kpn2I	TCCGGA	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	9 cut(s)	92, 128, 193, 205, 234, 261, 284, 375, 390
Lsp1109I	GCAGC	1 cut(s)	207
MalI	GATC	1 cut(s)	213
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	98, 287, 295
MluCI	AATT	4 cut(s)	144, 152, 174, 312
Mly113I	GGCGCC	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	2 cut(s)	256, 386
MroI	TCCGGA	1 cut(s)	376
MspI	CCGG	2 cut(s)	180, 377
MspR9I	CCNGG	2 cut(s)	181, 249
MvaI	CCWGG	1 cut(s)	249
NarI	GGCGCC	1 cut(s)	318
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	3 cut(s)	102, 283, 403
NlaIV	GGNNCC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	295
Pfl23II	CGTACG	1 cut(s)	258
PfoI	TCCNGGA	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	194, 197
PleI	GAGTC	1 cut(s)	235
PluTI	GGCGCC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	247
PspLI	CGTACG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	233
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SatI	GCNGC	2 cut(s)	193, 196
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	181, 249
SfoI	GGCGCC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	233
Sse9I	AATT	4 cut(s)	144, 152, 174, 312
SsiI	CCGC	5 cut(s)	63, 192, 245, 272, 324
SspDI	GGCGCC	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	179, 247
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	4 cut(s)	49, 209, 237, 258
TaqI	TCGA	2 cut(s)	40, 156
TasI	AATT	4 cut(s)	144, 152, 174, 312
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	2 cut(s)	296, 361
VpaK11BI	GGWCC	1 cut(s)	233
XapI	RAATTY	2 cut(s)	152, 174
XmiI	GTMKAC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.