Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008163.1

Orthogroup ID

OG0007467

Physical Location & Seq

Genomic Coordinates Reverse (-)

27791 .. 30351

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008163.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgagcggcgacgatgataaccggaaacggagcagccaatggccgcagtcgccgggcaggccctatcagaacaaagaggaagacatgaagctctgggggattttcgtctttggcttcattggcgccaccgcaactactttggcggtttttcagcttcgtaggactgttgattgggtctatactcagttgttcagatcacagtcatcgtggagaggagggagtggtggtacaagtcggacatcttttcaggaggaagcatggaaaagatataatcggcgcatgcaggaggagtatgaagaagaattggagagagtggaacgtataaggcgtatgcagaatgtgttcaatagagagaggaacaaatacaaaaggagctatgagacctggagggaaaatggtcagggtcagtatcatcaacatttccaaagagaggattggtattggaagactgagacatccttcaaagaccggaggagtaactacagggaaactcctagagaacatggcaactatttgttatcgcagcactactcaattttaggccttgacaggtttagaaaagcaccttacacagatgctgagattaagacagcatttaggaccaaggcaaaggaatttcacccagatcaaaaccaagataataaagaggccgctgaagcaaagttcaaagaagtaatggtgtcctatgaggccataaagaaggagaggggaaacctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

239

Amino Acids

29.0

Weight (kDa)

9.55

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07990 AT4G07990 AT4G07990
fragaria_vesca	FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490 FvH4_2g32490
malus_domestica	MD08G1076700.v1.1 MD15G1064000.v1.1
prunus_persica	Prupe.1G418000_v2.0.a1 Prupe.1G418000_v2.0.a1
pyrus_communis	pycom08g06350 pycom15g06070
rosa_chinensis	RchiOBHm_Chr6g0310161
rosa_laevigata	RLG00000010503
rosa_multiflora	Rmu_sc0008163.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158800
rosa_rugosa	Rorug06G0377900 Rorug06G0378000 Rorug06G0378000
rosa_samantha	Rh6AG492000 Rh6BG501600 Rh6DG492600
rosa_wichuraiana	Rw6G042810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	5 cut(s)	6, 44, 129, 143, 651
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	1 cut(s)	675
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	3 cut(s)	346, 463, 667
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	91, 154, 375
AluI	AGCT	3 cut(s)	91, 154, 375
Alw26I	GTCTC	2 cut(s)	374, 446
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	5 cut(s)	41, 59, 541, 648, 690
ApeKI	GCWGC	2 cut(s)	33, 523
ApoI	RAATTY	1 cut(s)	614
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	125, 279
AspS9I	GGNCC	2 cut(s)	60, 600
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	600
BanI	GGYRCC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	87, 452
BbvI	GCAGC	2 cut(s)	45, 535
BciT130I	CCWGG	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	374, 446
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	58
BisI	GCNGC	5 cut(s)	7, 34, 44, 524, 651
BlsI	GCNGC	5 cut(s)	8, 35, 45, 525, 652
Bme1390I	CCNGG	2 cut(s)	54, 385
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	2 cut(s)	60, 600
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	2 cut(s)	54, 385
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	2 cut(s)	87, 452
BpmI	CTGGAG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	603
BsaWI	WCCGGW	2 cut(s)	21, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	3 cut(s)	197, 441, 570
BseRI	GAGGAG	3 cut(s)	228, 302, 487
BseXI	GCAGC	2 cut(s)	45, 535
BshFI	GGCC	5 cut(s)	43, 61, 543, 650, 692
BshNI	GGYRCC	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	22, 53, 469
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	2 cut(s)	374, 446
BsnI	GGCC	5 cut(s)	43, 61, 543, 650, 692
Bso31I	GGTCTC	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	194, 625
BspACI	CCGC	5 cut(s)	6, 44, 129, 143, 651
BspANI	GGCC	5 cut(s)	43, 61, 543, 650, 692
BspCNI	CTCAG	3 cut(s)	196, 442, 571
BspLI	GGNNCC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	2 cut(s)	194, 625
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	603
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	2 cut(s)	166, 201
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	59, 281
BstDEI	CTNAG	3 cut(s)	183, 450, 579
BstF5I	GGATG	1 cut(s)	455
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	125, 279
BstKTI	GATC	2 cut(s)	197, 628
BstMAI	GTCTC	2 cut(s)	374, 446
BstMBI	GATC	2 cut(s)	194, 625
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 58, 120, 656
BstNI	CCWGG	1 cut(s)	385
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	52, 383
BstSFI	CTRYAG	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	45, 535
BstV2I	GAAGAC	2 cut(s)	87, 452
BsuRI	GGCC	5 cut(s)	43, 61, 543, 650, 692
BtsCI	GGATG	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	59, 281
CaiI	CAGNNNCTG	1 cut(s)	578
CfoI	GCGC	2 cut(s)	125, 279
Cfr13I	GGNCC	2 cut(s)	60, 600
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	4 cut(s)	85, 258, 280, 503
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	3 cut(s)	183, 450, 579
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	2 cut(s)	196, 627
DpnII	GATC	2 cut(s)	194, 625
EaeI	YGGCCR	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	603
Eco147I	AGGCCT	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	603
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	4 cut(s)	88, 261, 283, 506
FatI	CATG	4 cut(s)	84, 257, 279, 502
Fnu4HI	GCNGC	5 cut(s)	7, 34, 44, 524, 651
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	5 cut(s)	7, 34, 44, 524, 651
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	2 cut(s)	124, 278
GluI	GCNGC	5 cut(s)	7, 34, 44, 524, 651
GsuI	CTGGAG	1 cut(s)	406
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	5 cut(s)	43, 61, 543, 650, 692
HapII	CCGG	3 cut(s)	22, 53, 469
HhaI	GCGC	2 cut(s)	125, 279
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	88, 261, 283, 506
Hin6I	GCGC	2 cut(s)	123, 277
HinP1I	GCGC	2 cut(s)	123, 277
HpaII	CCGG	3 cut(s)	22, 53, 469
HphI	GGTGA	1 cut(s)	611
Hpy188I	TCNGA	3 cut(s)	69, 194, 237
Hpy188III	TCNNGA	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	469, 694
HpyCH4III	ACNGT	2 cut(s)	166, 201
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	283, 334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 58, 120, 656
HpyF3I	CTNAG	3 cut(s)	183, 450, 579
HpySE526I	ACGT	1 cut(s)	319
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	88, 261, 283, 506
HspAI	GCGC	2 cut(s)	123, 277
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	2 cut(s)	194, 625
LmnI	GCTCC	2 cut(s)	30, 372
Lsp1109I	GCAGC	2 cut(s)	45, 535
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	196, 627
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	194, 625
MboII	GAAGA	4 cut(s)	92, 308, 311, 457
MluCI	AATT	3 cut(s)	302, 534, 614
Mly113I	GGCGCC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	215
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	3 cut(s)	22, 53, 469
MspR9I	CCNGG	2 cut(s)	54, 385
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	4 cut(s)	49, 58, 120, 656
NarI	GGCGCC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	2 cut(s)	194, 625
NlaIII	CATG	4 cut(s)	88, 261, 283, 506
NlaIV	GGNNCC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	8, 35, 45, 525, 652
PluTI	GGCGCC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	60, 600
PstNI	CAGNNNCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	5 cut(s)	7, 34, 44, 524, 651
Sau3AI	GATC	2 cut(s)	194, 625
Sau96I	GGNCC	2 cut(s)	60, 600
ScrFI	CCNGG	2 cut(s)	54, 385
SetI	ASST	8 cut(s)	93, 156, 322, 377, 386, 554, 568, 717
SfaNI	GCATC	1 cut(s)	565
SfcI	CTRYAG	1 cut(s)	481
SfoI	GGCGCC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	600
SphI	GCATGC	1 cut(s)	283
Sse9I	AATT	3 cut(s)	302, 534, 614
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	5 cut(s)	6, 44, 129, 143, 651
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	52, 383
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	2 cut(s)	166, 201
TaiI	ACGT	1 cut(s)	322
TasI	AATT	3 cut(s)	302, 534, 614
TauI	GCSGC	3 cut(s)	9, 46, 653
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TseI	GCWGC	2 cut(s)	33, 523
TspDTI	ATGAA	3 cut(s)	101, 106, 309
TspGWI	ACGGA	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	600
XapI	RAATTY	1 cut(s)	614
XceI	RCATGY	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.