Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013852

Physical Location & Seq

Genomic Coordinates Forward (+)

5238773 .. 5241112

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGAGGGTGTTAGTGCAACTATGCATAAGTTAAGGCCTTATTTGTTAATGATCTTTTTGCAATTTGGAGCAGCAGGAACATATATTGTTATTATGGCCACTCTTAACCAAGGCCAGAACCGTTACGTCGTAATTGTGTATCGTAATCTTGTGGCTGCTCTTGTCCTTGCACCTTTTGCACTCATCTTTGAAAGGAAAGTGAGGCCGAAGATGACACTATCGGTTTTGTGGAAAATAATGGCACTTGGTTTCTTAGAGCCAGTCTTGGATCAGGGTTTTGGTTACTTGGGGATGAACATGACATCAGCAACATATACATCTGCGATCATGAACATTCTTCCTTCTGTCACATTTATAATAGCTTGGATTTTAAGAATGGAGAAAGTTAACATAGCGGAGGTACGAAGCAAAGCAAAGATCATTGGGACATTGGTGGGTCTTGGAGGGGCACTAGTAATGACATTGTACAAAGGTCCGCTTATTCCTTTACCGTGGTCTAACCCGAATATGGATCAACAAAACGGACATACAAATAATTCACAAGACCATAACAATTGGGTTGTTGGAACCTTGTTGATTCTCCTCGGTTGTGTTGCTTGGTCTGGTTTTTATGTTTTACAGTCGATAACAATAAAGACGTACCCTGCCGATCTTTCATTATCAGCCTTAATATGCCTAGCCGGGGCTGTCCAAAGCTTCGCGGTAGCGCTTGTGGTGGAGAGACACCCTAGCGGATGGGCGGTTGGTTGGGATGCAAGGCTTTTTGCACCTCTTTATACAGGAATAGTTAGCTCGGGGATAACGTACTATGTTCAAGGGATGGTTATGAAGACGAGAGGGCCAGTTTTTGTTACTGCCTTTAACCCTCTCTGCATGATTCTTGTAGCTCTCATTGCCTCTTTTATTCTTCATGAACAAATCCATTTCGGATGTGTAATAGGAGGGGCAGTGATCGCCGCGGGTTTGTATATGGTTGTTTGGGGAAAAGGAAAAGACTATGAAGTATCCGGATTAGATATCCTTGAAAAGAATAGCCTCCAAGAATTGCCTATCACAACTAAAAGTGAGGATGACAACAAATTGGTTTCTTCTATAAGCGACAACAGCAATGTGACCATTCCTGGTGGTGCGCATAGTAACACATCTGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015318 GO:0015562 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0022857 GO:0032973 GO:0034220 GO:0034639 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0140115 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

384

Amino Acids

41.72

Weight (kDa)

8.76

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	15 - 154	5e-11	EamA-like transporter family
EamA	PF00892	189 - 326	6.5e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08290 AT4G08290
fragaria_vesca	FvH4_2g26690 FvH4_2g26690
prunus_persica	Prupe.1G500600_v2.0.a1
pyrus_communis	pycom08g14200
rosa_chinensis	RchiOBHm_Chr6g0295531
rosa_laevigata	RLG00000011793
rosa_multiflora	Rmu_sc0005000.1_g000013
rosa_roxburghii	Rroxscaffold_7G00172390
rosa_rugosa	Rorug06G0251700
rosa_samantha	Rh2AG083600 Rh6AG364900 Rh6BG373300 Rh6CG379500 Rh6DG366000
rosa_wichuraiana	Rw6G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
Acc16I	TGCGCA	1 cut(s)	1131
AccII	CGCG	2 cut(s)	701, 959
AccIII	TCCGGA	1 cut(s)	1007
AciI	CCGC	7 cut(s)	395, 476, 701, 732, 740, 957, 959
AclWI	GGATC	2 cut(s)	276, 519
AcoI	YGGCCR	1 cut(s)	96
AfaI	GTAC	4 cut(s)	402, 467, 641, 806
AfeI	AGCGCT	1 cut(s)	708
AfiI	CCNNNNNNNGG	2 cut(s)	508, 682
AgsI	TTSAA	3 cut(s)	191, 815, 1025
AhlI	ACTAGT	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	1120
AluBI	AGCT	4 cut(s)	362, 696, 792, 887
AluI	AGCT	4 cut(s)	362, 696, 792, 887
Alw26I	GTCTC	1 cut(s)	715
AlwI	GGATC	2 cut(s)	276, 519
Ama87I	CYCGRG	1 cut(s)	793
Aor13HI	TCCGGA	1 cut(s)	1007
Aor51HI	AGCGCT	1 cut(s)	708
AoxI	GGCC	5 cut(s)	35, 96, 112, 203, 839
ApeKI	GCWGC	2 cut(s)	71, 155
AspLEI	GCGC	2 cut(s)	709, 1132
AspS9I	GGNCC	2 cut(s)	473, 839
AsuC2I	CCSGG	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	793
AvaII	GGWCC	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	836
BbvI	GCAGC	2 cut(s)	83, 142
BccI	CCATC	2 cut(s)	729, 814
BciT130I	CCWGG	1 cut(s)	1122
BciVI	GTATCC	1 cut(s)	1015
BcnI	CCSGG	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	715
BcuI	ACTAGT	1 cut(s)	451
BfaI	CTAG	3 cut(s)	452, 677, 729
BfoI	RGCGCY	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	1015
BisI	GCNGC	3 cut(s)	72, 156, 957
BlsI	GCNGC	3 cut(s)	73, 157, 958
Bme1390I	CCNGG	2 cut(s)	682, 1122
Bme18I	GGWCC	1 cut(s)	473
BmeT110I	CYCGRG	1 cut(s)	793
BmgT120I	GGNCC	2 cut(s)	473, 839
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	2 cut(s)	682, 1122
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	836
BpuMI	CCSGG	1 cut(s)	682
BsaJI	CCNNGG	5 cut(s)	109, 491, 583, 681, 957
BsaWI	WCCGGW	1 cut(s)	1007
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 682
Bse1I	ACTGG	2 cut(s)	260, 842
Bse3DI	GCAATG	2 cut(s)	891, 1114
BseAI	TCCGGA	1 cut(s)	1007
BseBI	CCWGG	1 cut(s)	1122
BseDI	CCNNGG	5 cut(s)	109, 491, 583, 681, 957
BseGI	GGATG	6 cut(s)	297, 740, 757, 825, 935, 1075
BseLI	CCNNNNNNNGG	2 cut(s)	508, 682
BseMI	GCAATG	2 cut(s)	891, 1114
BseNI	ACTGG	2 cut(s)	260, 842
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	2 cut(s)	83, 142
Bsh1236I	CGCG	2 cut(s)	701, 959
BshFI	GGCC	5 cut(s)	37, 98, 114, 205, 841
BsiHKCI	CYCGRG	1 cut(s)	793
BsiSI	CCGG	2 cut(s)	681, 1008
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	508, 682
BsmAI	GTCTC	1 cut(s)	715
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	5 cut(s)	37, 98, 114, 205, 841
BsoBI	CYCGRG	1 cut(s)	793
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp13I	TCCGGA	1 cut(s)	1007
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	7 cut(s)	51, 268, 324, 417, 511, 649, 951
BspACI	CCGC	7 cut(s)	395, 476, 701, 732, 740, 957, 959
BspANI	GGCC	5 cut(s)	37, 98, 114, 205, 841
BspEI	TCCGGA	1 cut(s)	1007
BspFNI	CGCG	2 cut(s)	701, 959
BspHI	TCATGA	2 cut(s)	327, 910
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	276, 519
BsrDI	GCAATG	2 cut(s)	891, 1114
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	260, 842
BssECI	CCNNGG	5 cut(s)	109, 491, 583, 681, 957
BssMI	GATC	7 cut(s)	51, 268, 324, 417, 511, 649, 951
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	1122
Bst4CI	ACNGT	3 cut(s)	122, 492, 621
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	253
BstDSI	CCRYGG	2 cut(s)	491, 957
BstF5I	GGATG	6 cut(s)	297, 740, 757, 825, 935, 1075
BstFNI	CGCG	2 cut(s)	701, 959
BstH2I	RGCGCY	1 cut(s)	710
BstHHI	GCGC	2 cut(s)	709, 1132
BstKTI	GATC	7 cut(s)	54, 271, 327, 420, 514, 652, 954
BstMAI	GTCTC	1 cut(s)	715
BstMBI	GATC	7 cut(s)	51, 268, 324, 417, 511, 649, 951
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 893, 953, 1104
BstNI	CCWGG	1 cut(s)	1122
BstSCI	CCNGG	2 cut(s)	680, 1120
BstSLI	GKGCMC	1 cut(s)	451
BstUI	CGCG	2 cut(s)	701, 959
BstV1I	GCAGC	2 cut(s)	83, 142
BstV2I	GAAGAC	1 cut(s)	836
BsuI	GTATCC	1 cut(s)	1015
BsuRI	GGCC	5 cut(s)	37, 98, 114, 205, 841
BtgI	CCRYGG	2 cut(s)	491, 957
BtsCI	GGATG	6 cut(s)	297, 740, 757, 825, 935, 1075
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	1 cut(s)	954
CciI	TCATGA	2 cut(s)	327, 910
CfoI	GCGC	2 cut(s)	709, 1132
Cfr13I	GGNCC	2 cut(s)	473, 839
Cfr42I	CCGCGG	1 cut(s)	960
Csp6I	GTAC	4 cut(s)	401, 466, 640, 805
CviAII	CATG	4 cut(s)	298, 328, 874, 911
CviQI	GTAC	4 cut(s)	401, 466, 640, 805
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	7 cut(s)	53, 270, 326, 419, 513, 651, 953
DpnII	GATC	7 cut(s)	51, 268, 324, 417, 511, 649, 951
EaeI	YGGCCR	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	1018
Eco47I	GGWCC	1 cut(s)	473
Eco47III	AGCGCT	1 cut(s)	708
Eco88I	CYCGRG	1 cut(s)	793
EcoRII	CCWGG	1 cut(s)	1120
EcoRV	GATATC	1 cut(s)	1018
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	4 cut(s)	301, 331, 877, 914
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	4 cut(s)	297, 327, 873, 910
FauI	CCCGC	1 cut(s)	952
Fnu4HI	GCNGC	3 cut(s)	72, 156, 957
FokI	GGATG	6 cut(s)	304, 747, 764, 832, 942, 1082
Fsp4HI	GCNGC	3 cut(s)	72, 156, 957
FspAI	RTGCGCAY	1 cut(s)	1131
FspBI	CTAG	3 cut(s)	452, 677, 729
FspI	TGCGCA	1 cut(s)	1131
GlaI	GCGC	2 cut(s)	708, 1131
GluI	GCNGC	3 cut(s)	72, 156, 957
HaeII	RGCGCY	1 cut(s)	710
HaeIII	GGCC	5 cut(s)	37, 98, 114, 205, 841
HapII	CCGG	2 cut(s)	681, 1008
HhaI	GCGC	2 cut(s)	709, 1132
Hin1II	CATG	4 cut(s)	301, 331, 877, 914
Hin6I	GCGC	2 cut(s)	707, 1130
HinP1I	GCGC	2 cut(s)	707, 1130
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	2 cut(s)	577, 877
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	681, 1008
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	929
Hpy188III	TCNNGA	4 cut(s)	328, 911, 1008, 1146
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	3 cut(s)	122, 492, 621
HpyCH4IV	ACGT	3 cut(s)	126, 638, 803
HpyCH4V	TGCA	8 cut(s)	17, 25, 61, 170, 179, 755, 767, 873
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 893, 953, 1104
HpyF3I	CTNAG	1 cut(s)	253
HpySE526I	ACGT	3 cut(s)	126, 638, 803
Hsp92II	CATG	4 cut(s)	301, 331, 877, 914
HspAI	GCGC	2 cut(s)	707, 1130
Kpn2I	TCCGGA	1 cut(s)	1007
KspAI	GTTAAC	1 cut(s)	388
KspI	CCGCGG	1 cut(s)	960
Kzo9I	GATC	7 cut(s)	51, 268, 324, 417, 511, 649, 951
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	2 cut(s)	83, 142
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	3 cut(s)	452, 677, 729
MaeII	ACGT	3 cut(s)	126, 638, 803
MaeIII	GTNAC	6 cut(s)	122, 281, 346, 850, 1111, 1136
MalI	GATC	7 cut(s)	53, 270, 326, 419, 513, 651, 953
MboI	GATC	7 cut(s)	51, 268, 324, 417, 511, 649, 951
MboII	GAAGA	5 cut(s)	220, 329, 841, 899, 1080
MfeI	CAATTG	1 cut(s)	553
MhlI	GDGCHC	1 cut(s)	451
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	6 cut(s)	62, 132, 535, 553, 1043, 1079
MluNI	TGGCCA	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	544
Mox20I	TGGCCA	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	27
MroI	TCCGGA	1 cut(s)	1007
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	7 cut(s)	32, 47, 105, 371, 387, 668, 861
Msp20I	TGGCCA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	2 cut(s)	681, 1008
MspR9I	CCNGG	2 cut(s)	682, 1122
MunI	CAATTG	1 cut(s)	553
MvaI	CCWGG	1 cut(s)	1122
MvnI	CGCG	2 cut(s)	701, 959
MwoI	GCNNNNNNNGC	4 cut(s)	176, 893, 953, 1104
NciI	CCSGG	1 cut(s)	682
NdeII	GATC	7 cut(s)	51, 268, 324, 417, 511, 649, 951
NlaIII	CATG	4 cut(s)	301, 331, 877, 914
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	2 cut(s)	346, 1111
NsbI	TGCGCA	1 cut(s)	1131
NsiI	ATGCAT	1 cut(s)	27
PagI	TCATGA	2 cut(s)	327, 910
PceI	AGGCCT	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	800
PfeI	GAWTC	2 cut(s)	577, 877
PkrI	GCNGC	3 cut(s)	73, 157, 958
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	1120
PspGI	CCWGG	1 cut(s)	1120
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	2 cut(s)	473, 839
RsaI	GTAC	4 cut(s)	402, 467, 641, 806
RsaNI	GTAC	4 cut(s)	401, 466, 640, 805
SacII	CCGCGG	1 cut(s)	960
SaqAI	TTAA	7 cut(s)	32, 47, 105, 371, 387, 668, 861
SatI	GCNGC	3 cut(s)	72, 156, 957
Sau3AI	GATC	7 cut(s)	51, 268, 324, 417, 511, 649, 951
Sau96I	GGNCC	2 cut(s)	473, 839
ScrFI	CCNGG	2 cut(s)	682, 1122
SduI	GDGCHC	1 cut(s)	451
SfaNI	GCATC	1 cut(s)	742
Sfr303I	CCGCGG	1 cut(s)	960
SgrBI	CCGCGG	1 cut(s)	960
SinI	GGWCC	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	451
Sse9I	AATT	6 cut(s)	62, 132, 535, 553, 1043, 1079
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	7 cut(s)	395, 476, 701, 732, 740, 957, 959
SspMI	CTAG	3 cut(s)	452, 677, 729
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	680, 1120
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	3 cut(s)	122, 492, 621
TaiI	ACGT	3 cut(s)	129, 641, 806
TaqI	TCGA	1 cut(s)	623
TasI	AATT	6 cut(s)	62, 132, 535, 553, 1043, 1079
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	959
TfiI	GAWTC	2 cut(s)	577, 877
Tru1I	TTAA	7 cut(s)	32, 47, 105, 371, 387, 668, 861
Tru9I	TTAA	7 cut(s)	32, 47, 105, 371, 387, 668, 861
TscAI	CASTG	1 cut(s)	954
TseFI	GTSAC	2 cut(s)	346, 1111
TseI	GCWGC	2 cut(s)	71, 155
Tsp45I	GTSAC	2 cut(s)	346, 1111
TspDTI	ATGAA	7 cut(s)	308, 344, 645, 842, 899, 927, 1014
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	1 cut(s)	954
VpaK11BI	GGWCC	1 cut(s)	473
XspI	CTAG	3 cut(s)	452, 677, 729
Zsp2I	ATGCAT	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.