Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013852

Physical Location & Seq

Genomic Coordinates Reverse (-)

41439845 .. 41442586

Gene Structure 2742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G500600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCATGTGGGCAGTTTGGTGTTGTGTTGAAGAAGCTGAAACCTTATTTGCTTGTTGTGAGCTTGCAATTTGGGAGTGCAGGGATATACATAATCAGCATGGTTACTCTCAACCATGGCATGAACCGATTTGTTCTCATCGTCTATCGCAATGCTGCTGCAGCCCTCTTCCTTGCTCCTTTCGCCTTGGTTCTTGAAAGGACAAAGAGACCAAAAATGACGATTTCCACCTTTTTGCACATAATGGTGCTGGGATTCCTAGAGCCAATTGTTGATCAGGGGTTTACATACTTGGGGATGAAATACACATCGGCATCATTTACATCTGCTATCATGAACGCCGTCCCGTCTGTTACCTTTGTTATCGCAGTTATTTTTCGGGTAGAAAGTGTAAAGATGAAAGAGGTACGCAGTCAAGCCAAGGTGATAGGAACCCTAGTAACTTTTGCCGGCGCCTTGCTGATGACAGTGTACAAAGGCCCTGTCGTTGACCTCCTATGGTCACACAAAACCAGCAGCCACAGCAGCACCACTACATCCTCCGACCAACACTGGGTAACCGGGACACTCTTCATCCTCATAGGTTGTGTTGCTTGGTCCTGTTTCTACGTATTGCAATCCATAACAGTGAAGAAATACCCTGCAAACATCTCACTTTCCTGCTTGATATGCTTGGTGGGAGCGTTGCAAGGTGCAGCCGTGGCAGTTACTGTAGAGCGTCGTGCTAGTGCGTGGGCGGTCGGCTGGGATTCGAGGCTCCTAGCGCCTCTCTACTCGGGAATAATTGGCTCTGGAATTACTTACTACGTGCAAGGCTTGGTGATGAAGACTAGAGGCCCGGTTTTCGTAACAGCTTTCAACCCTCTCTGCATGATCATCGTCTCTATTCTGGGTTCCATTATTCTAGCTGAGAAACTTCACCTTGGCAGTATAATTGGAGGCGTGATCATCGTGTTTGGCCTTTATTCTGTGGTGTGGGGTAAAAGCAAGGATTATTGTAAAAGCTCAGCAGTGCCATCCAGTCCTGCTATGAAGGATGAAGCTCACGAATTGCCAATTTCTAATGGAAGTGCTATCAATGGGACTAAATTGGTCATTGACAAAAAGGGCAGCGACCAGCCATCCCAAATGCAATATATGACGGTCCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

385

Amino Acids

41.55

Weight (kDa)

9.59

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08290 AT4G08290
fragaria_vesca	FvH4_2g26690 FvH4_2g26690
prunus_persica	Prupe.1G500600_v2.0.a1
pyrus_communis	pycom08g14200
rosa_chinensis	RchiOBHm_Chr6g0295531
rosa_laevigata	RLG00000011793
rosa_multiflora	Rmu_sc0005000.1_g000013
rosa_roxburghii	Rroxscaffold_7G00172390
rosa_rugosa	Rorug06G0251700
rosa_samantha	Rh2AG083600 Rh6AG364900 Rh6BG373300 Rh6CG379500 Rh6DG366000
rosa_wichuraiana	Rw6G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AciI	CCGC	1 cut(s)	737
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	2 cut(s)	408, 473
AfiI	CCNNNNNNNGG	1 cut(s)	553
AgsI	TTSAA	3 cut(s)	31, 197, 859
AluBI	AGCT	6 cut(s)	37, 63, 854, 908, 1005, 1043
AluI	AGCT	6 cut(s)	37, 63, 854, 908, 1005, 1043
Alw26I	GTCTC	2 cut(s)	202, 886
AlwNI	CAGNNNCTG	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	775
AoxI	GGCC	3 cut(s)	478, 835, 958
ApeKI	GCWGC	7 cut(s)	155, 158, 161, 516, 525, 695, 1110
ArsI	GACNNNNNNTTYG	2 cut(s)	468, 500
AspLEI	GCGC	2 cut(s)	455, 766
AspS9I	GGNCC	4 cut(s)	479, 597, 836, 1144
AsuC2I	CCSGG	2 cut(s)	562, 839
AsuHPI	GGTGA	3 cut(s)	436, 832, 911
AvaI	CYCGRG	1 cut(s)	775
AvaII	GGWCC	2 cut(s)	597, 1144
BanI	GGYRCC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	833
BbvI	GCAGC	7 cut(s)	142, 145, 173, 528, 537, 707, 1122
BccI	CCATC	2 cut(s)	1024, 1129
BceAI	ACGGC	2 cut(s)	326, 683
BcgI	CGANNNNNNTGC	2 cut(s)	859, 893
BclI	TGATCA	3 cut(s)	274, 873, 945
BcnI	CCSGG	2 cut(s)	562, 839
BcoDI	GTCTC	2 cut(s)	202, 886
BfaI	CTAG	6 cut(s)	260, 437, 726, 761, 831, 905
BfmI	CTRYAG	2 cut(s)	159, 711
BfoI	RGCGCY	2 cut(s)	456, 767
BisI	GCNGC	7 cut(s)	156, 159, 162, 517, 526, 696, 1111
BlpI	GCTNAGC	1 cut(s)	1006
BlsI	GCNGC	7 cut(s)	157, 160, 163, 518, 527, 697, 1112
Bme1390I	CCNGG	2 cut(s)	562, 839
Bme18I	GGWCC	2 cut(s)	597, 1144
BmeT110I	CYCGRG	1 cut(s)	775
BmgT120I	GGNCC	4 cut(s)	479, 597, 836, 1144
BmiI	GGNNCC	4 cut(s)	433, 454, 758, 895
BmrFI	CCNGG	2 cut(s)	562, 839
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	1 cut(s)	323
BmuI	ACTGGG	1 cut(s)	562
BpiI	GAAGAC	1 cut(s)	833
Bpu1102I	GCTNAGC	1 cut(s)	1006
BpuMI	CCSGG	2 cut(s)	562, 839
BsaAI	YACGTR	2 cut(s)	610, 808
BsaHI	GRCGYC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	5 cut(s)	115, 186, 420, 699, 922
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse118I	RCCGGY	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	557, 1020
Bse3DI	GCAATG	1 cut(s)	157
BseDI	CCNNGG	5 cut(s)	115, 186, 420, 699, 922
BseGI	GGATG	6 cut(s)	303, 536, 573, 1016, 1042, 1121
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	900, 1020
BseNI	ACTGG	2 cut(s)	557, 1020
BseXI	GCAGC	7 cut(s)	142, 145, 173, 528, 537, 707, 1122
BseYI	CCCAGC	2 cut(s)	250, 744
BsgI	GTGCAG	2 cut(s)	99, 714
Bsh1285I	CGRYCG	1 cut(s)	741
BshFI	GGCC	3 cut(s)	480, 837, 960
BshNI	GGYRCC	1 cut(s)	452
BsiEI	CGRYCG	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	775
BsiSI	CCGG	3 cut(s)	450, 561, 839
BslFI	GGGAC	3 cut(s)	329, 577, 1096
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	2 cut(s)	202, 886
BsmBI	CGTCTC	1 cut(s)	886
BsmFI	GGGAC	3 cut(s)	329, 577, 1096
BsnI	GGCC	3 cut(s)	480, 837, 960
Bso31I	GGTCTC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	775
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	274, 873, 945
Bsp1720I	GCTNAGC	1 cut(s)	1006
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	1 cut(s)	737
BspANI	GGCC	3 cut(s)	480, 837, 960
BspCNI	CTCAG	2 cut(s)	901, 1019
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	4 cut(s)	433, 454, 758, 895
BspMAI	CTGCAG	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	449
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	557, 1020
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	5 cut(s)	115, 186, 420, 699, 922
BssMI	GATC	3 cut(s)	274, 873, 945
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	4 cut(s)	115, 186, 420, 922
Bst4CI	ACNGT	4 cut(s)	469, 628, 712, 1144
Bst6I	CTCTTC	2 cut(s)	173, 575
BstACI	GRCGYC	1 cut(s)	453
BstAUI	TGTACA	1 cut(s)	471
BstBAI	YACGTR	2 cut(s)	610, 808
BstC8I	GCNNGC	2 cut(s)	65, 451
BstDEI	CTNAG	2 cut(s)	909, 1006
BstDSI	CCRYGG	2 cut(s)	115, 699
BstEII	GGTNACC	1 cut(s)	556
BstF5I	GGATG	6 cut(s)	303, 536, 573, 1016, 1042, 1121
BstH2I	RGCGCY	2 cut(s)	456, 767
BstHHI	GCGC	2 cut(s)	455, 766
BstKTI	GATC	3 cut(s)	277, 876, 948
BstMAI	GTCTC	2 cut(s)	202, 886
BstMBI	GATC	3 cut(s)	274, 873, 945
BstMCI	CGRYCG	1 cut(s)	741
BstMWI	GCNNNNNNNGC	7 cut(s)	161, 182, 522, 525, 669, 701, 763
BstNSI	RCATGY	1 cut(s)	9
BstPI	GGTNACC	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	560, 837
BstSFI	CTRYAG	2 cut(s)	159, 711
BstSNI	TACGTA	1 cut(s)	610
BstV1I	GCAGC	7 cut(s)	142, 145, 173, 528, 537, 707, 1122
BstV2I	GAAGAC	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	480, 837, 960
BtgI	CCRYGG	2 cut(s)	115, 699
BtsCI	GGATG	6 cut(s)	303, 536, 573, 1016, 1042, 1121
BtsI	GCAGTG	1 cut(s)	1017
BtsIMutI	CAGTG	4 cut(s)	474, 550, 633, 1017
Cac8I	GCNNGC	2 cut(s)	65, 451
CaiI	CAGNNNCTG	1 cut(s)	710
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	2 cut(s)	455, 766
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	4 cut(s)	479, 597, 836, 1144
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	407, 472
CviAII	CATG	6 cut(s)	6, 100, 116, 121, 334, 871
CviQI	GTAC	2 cut(s)	407, 472
DdeI	CTNAG	2 cut(s)	909, 1006
DinI	GGCGCC	1 cut(s)	454
DpnI	GATC	3 cut(s)	276, 875, 947
DpnII	GATC	3 cut(s)	274, 873, 945
Eam1104I	CTCTTC	2 cut(s)	173, 575
EarI	CTCTTC	2 cut(s)	173, 575
Eco105I	TACGTA	1 cut(s)	610
Eco130I	CCWWGG	4 cut(s)	115, 186, 420, 922
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	597, 1144
Eco88I	CYCGRG	1 cut(s)	775
Eco91I	GGTNACC	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	556
EcoT14I	CCWWGG	4 cut(s)	115, 186, 420, 922
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
ErhI	CCWWGG	4 cut(s)	115, 186, 420, 922
Esp3I	CGTCTC	1 cut(s)	886
FaeI	CATG	6 cut(s)	9, 103, 119, 124, 337, 874
FaqI	GGGAC	3 cut(s)	329, 577, 1096
FatI	CATG	6 cut(s)	5, 99, 115, 120, 333, 870
FbaI	TGATCA	3 cut(s)	274, 873, 945
Fnu4HI	GCNGC	7 cut(s)	156, 159, 162, 517, 526, 696, 1111
FokI	GGATG	6 cut(s)	310, 523, 560, 1003, 1049, 1108
Fsp4HI	GCNGC	7 cut(s)	156, 159, 162, 517, 526, 696, 1111
FspBI	CTAG	6 cut(s)	260, 437, 726, 761, 831, 905
GlaI	GCGC	2 cut(s)	454, 765
GluI	GCNGC	7 cut(s)	156, 159, 162, 517, 526, 696, 1111
GsaI	CCCAGC	2 cut(s)	254, 748
HaeII	RGCGCY	2 cut(s)	456, 767
HaeIII	GGCC	3 cut(s)	480, 837, 960
HapII	CCGG	3 cut(s)	450, 561, 839
HgaI	GACGC	1 cut(s)	707
HhaI	GCGC	2 cut(s)	455, 766
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	6 cut(s)	9, 103, 119, 124, 337, 874
Hin6I	GCGC	2 cut(s)	453, 764
HinP1I	GCGC	2 cut(s)	453, 764
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	2 cut(s)	255, 749
HpaII	CCGG	3 cut(s)	450, 561, 839
HphI	GGTGA	3 cut(s)	436, 832, 911
Hpy166II	GTNNAC	3 cut(s)	285, 472, 490
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	5 cut(s)	194, 334, 777, 792, 1046
Hpy8I	GTNNAC	3 cut(s)	285, 472, 490
Hpy99I	CGWCG	1 cut(s)	723
HpyAV	CCTTC	1 cut(s)	1027
HpyCH4III	ACNGT	4 cut(s)	469, 628, 712, 1144
HpyCH4IV	ACGT	2 cut(s)	609, 807
HpyF10VI	GCNNNNNNNGC	7 cut(s)	161, 182, 522, 525, 669, 701, 763
HpyF3I	CTNAG	2 cut(s)	909, 1006
HpySE526I	ACGT	2 cut(s)	609, 807
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	6 cut(s)	9, 103, 119, 124, 337, 874
HspAI	GCGC	2 cut(s)	453, 764
KasI	GGCGCC	1 cut(s)	452
KroI	GCCGGC	1 cut(s)	449
KroNI	GCCGGC	1 cut(s)	451
Ksp22I	TGATCA	3 cut(s)	274, 873, 945
Kzo9I	GATC	3 cut(s)	274, 873, 945
LmnI	GCTCC	3 cut(s)	181, 680, 762
Lsp1109I	GCAGC	7 cut(s)	142, 145, 173, 528, 537, 707, 1122
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	6 cut(s)	260, 437, 726, 761, 831, 905
MaeII	ACGT	2 cut(s)	609, 807
MaeIII	GTNAC	7 cut(s)	103, 352, 439, 501, 556, 706, 847
MalI	GATC	3 cut(s)	276, 875, 947
MboI	GATC	3 cut(s)	274, 873, 945
MboII	GAAGA	5 cut(s)	43, 160, 562, 643, 838
MfeI	CAATTG	1 cut(s)	267
MluCI	AATT	8 cut(s)	68, 267, 783, 795, 933, 1049, 1056, 1088
Mly113I	GGCGCC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	567
MroNI	GCCGGC	1 cut(s)	449
MslI	CAYNNNNRTG	2 cut(s)	245, 626
MspI	CCGG	3 cut(s)	450, 561, 839
MspR9I	CCNGG	2 cut(s)	562, 839
MunI	CAATTG	1 cut(s)	267
MwoI	GCNNNNNNNGC	7 cut(s)	161, 182, 522, 525, 669, 701, 763
NaeI	GCCGGC	1 cut(s)	451
NarI	GGCGCC	1 cut(s)	453
NciI	CCSGG	2 cut(s)	562, 839
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	3 cut(s)	274, 873, 945
NgoMIV	GCCGGC	1 cut(s)	449
NlaIII	CATG	6 cut(s)	9, 103, 119, 124, 337, 874
NlaIV	GGNNCC	4 cut(s)	433, 454, 758, 895
NmuCI	GTSAC	1 cut(s)	501
NspI	RCATGY	1 cut(s)	9
PagI	TCATGA	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	255, 749
PkrI	GCNGC	7 cut(s)	157, 160, 163, 518, 527, 697, 1112
PluTI	GGCGCC	1 cut(s)	456
Ppu21I	YACGTR	2 cut(s)	610, 808
PspEI	GGTNACC	1 cut(s)	556
PspFI	CCCAGC	2 cut(s)	250, 744
PspN4I	GGNNCC	4 cut(s)	433, 454, 758, 895
PspPI	GGNCC	4 cut(s)	479, 597, 836, 1144
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	710
RsaI	GTAC	2 cut(s)	408, 473
RsaNI	GTAC	2 cut(s)	407, 472
RseI	CAYNNNNRTG	2 cut(s)	245, 626
SatI	GCNGC	7 cut(s)	156, 159, 162, 517, 526, 696, 1111
Sau3AI	GATC	3 cut(s)	274, 873, 945
Sau96I	GGNCC	4 cut(s)	479, 597, 836, 1144
ScrFI	CCNGG	2 cut(s)	562, 839
SfaNI	GCATC	1 cut(s)	323
SfcI	CTRYAG	2 cut(s)	159, 711
SfoI	GGCGCC	1 cut(s)	454
SinI	GGWCC	2 cut(s)	597, 1144
SmiMI	CAYNNNNRTG	2 cut(s)	245, 626
SnaBI	TACGTA	1 cut(s)	610
Sse9I	AATT	8 cut(s)	68, 267, 783, 795, 933, 1049, 1056, 1088
SsiI	CCGC	1 cut(s)	737
SspDI	GGCGCC	1 cut(s)	452
SspMI	CTAG	6 cut(s)	260, 437, 726, 761, 831, 905
StyD4I	CCNGG	2 cut(s)	560, 837
StyI	CCWWGG	4 cut(s)	115, 186, 420, 922
TaaI	ACNGT	4 cut(s)	469, 628, 712, 1144
TaiI	ACGT	2 cut(s)	612, 810
TaqI	TCGA	1 cut(s)	752
TasI	AATT	8 cut(s)	68, 267, 783, 795, 933, 1049, 1056, 1088
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	255, 749
TscAI	CASTG	4 cut(s)	474, 557, 633, 1017
TseFI	GTSAC	1 cut(s)	501
TseI	GCWGC	7 cut(s)	155, 158, 161, 516, 525, 695, 1110
Tsp45I	GTSAC	1 cut(s)	501
TspDTI	ATGAA	8 cut(s)	137, 314, 350, 413, 562, 839, 1046, 1053
TspRI	CASTG	4 cut(s)	474, 557, 633, 1017
VpaK11BI	GGWCC	2 cut(s)	597, 1144
XceI	RCATGY	1 cut(s)	9
XspI	CTAG	6 cut(s)	260, 437, 726, 761, 831, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.