Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013852

Physical Location & Seq

Genomic Coordinates Forward (+)

56381267 .. 56384620

Gene Structure 3354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG364900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCGAGTAATATGTGGAAGAAGGCGAAACCCTATTTGCTGACGATAGGTTTGCAATTCGGAAGTGCAGGGATGTACATCATAAGCACTGCGACTCTCAACCATGGCATGAATCGATATGTTCTTATTGTGTATCGCAATGCTATTGCAGCTCTTGTCCTCGCTCCTTTTGCTTTGGTTCTTGAAAGGAAAACGAGGCCCAAAATGACGCTTTCAATCTTTTTCCACATAATGGTGCTGGGATTTCTAGAGCCGGTCCTTGATCAGGGCTTTGCTTACTTGGGAATGAAATATACTTCGGCATCATTTACTTCTGCCATCATGAATGCCGTTCCCTCTGTTACCTTTGTAATTTCCGTCATTTTCCGGATAGAGCATGTAAACATTAAGGAAGTCCGGAGTCAAGCGAAGGTGATGGGAACCCTAGTGACCTTTGGGGGAGCTTTGTTGATGGCAATGTACAAAGGCCCTGCCATTAACTTAGTAGGCTCACATGATGACGGAGGCCACCATGAAAGTAGCAGCCGCACCTCGAGCACACACTGGGCAATGGGGACGCTCTTTATCCTAATAGGTTGTGTGGCTTGGTCCTGCTTCTACGTGTTACAATCTGTAACAGTGAAGAAATACCCGGCAAACATATCCCTTTCCTGCTGGATATGCTCGATGGGCGCAATGCAAGGTGCAGCAGTAGCGTTTGTTGCAGAGCGCCATCCTAGTGCATGGGCCGTCGGCTGGGATACGAGGCTCCTAGCACCTCTCTATACAGGAATAGTTAGCTCTGGAATTACATACTATGTGCAAGGATTGGTAATGAAAACTAGAGGACCAGTATTTGTAACAGCTTTTAACCCTCTTTGCATGATCCTCGTCGCAATTCTGGCTTCGTTCGTTCTAGCTGAGAAACTCCACCTGGGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

307

Amino Acids

33.54

Weight (kDa)

9.66

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	12 - 151	2.1e-11	EamA-like transporter family
EamA	PF00892	184 - 305	1.9e-09	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08290 AT4G08290
fragaria_vesca	FvH4_2g26690 FvH4_2g26690
prunus_persica	Prupe.1G500600_v2.0.a1
pyrus_communis	pycom08g14200
rosa_chinensis	RchiOBHm_Chr6g0295531
rosa_laevigata	RLG00000011793
rosa_multiflora	Rmu_sc0005000.1_g000013
rosa_roxburghii	Rroxscaffold_7G00172390
rosa_rugosa	Rorug06G0251700
rosa_samantha	Rh2AG083600 Rh6AG364900 Rh6BG373300 Rh6CG379500 Rh6DG366000
rosa_wichuraiana	Rw6G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	909
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccIII	TCCGGA	2 cut(s)	366, 396
AciI	CCGC	1 cut(s)	526
AclWI	GGATC	1 cut(s)	859
AfaI	GTAC	2 cut(s)	77, 461
AfiI	CCNNNNNNNGG	3 cut(s)	232, 265, 735
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	2 cut(s)	185, 216
AjnI	CCWGG	1 cut(s)	912
AluBI	AGCT	5 cut(s)	152, 443, 780, 845, 899
AluI	AGCT	5 cut(s)	152, 443, 780, 845, 899
Alw21I	GWGCWC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	859
Ama87I	CYCGRG	1 cut(s)	532
Aor13HI	TCCGGA	2 cut(s)	366, 396
AoxI	GGCC	4 cut(s)	197, 466, 505, 726
ApeKI	GCWGC	3 cut(s)	149, 522, 686
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AspLEI	GCGC	2 cut(s)	674, 711
AspS9I	GGNCC	6 cut(s)	198, 256, 467, 588, 726, 827
AsuC2I	CCSGG	1 cut(s)	632
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	532
AvaII	GGWCC	3 cut(s)	256, 588, 827
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	3 cut(s)	161, 534, 698
BccI	CCATC	5 cut(s)	326, 409, 445, 661, 720
BceAI	ACGGC	2 cut(s)	314, 713
BcgI	CGANNNNNNTGC	4 cut(s)	34, 68, 850, 884
BciT130I	CCWGG	1 cut(s)	914
BciVI	GTATCC	1 cut(s)	733
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	632
BfaI	CTAG	6 cut(s)	248, 425, 717, 752, 822, 896
BfoI	RGCGCY	1 cut(s)	712
BfuAI	ACCTGC	1 cut(s)	909
BfuI	GTATCC	1 cut(s)	733
BisI	GCNGC	4 cut(s)	150, 523, 526, 687
BlsI	GCNGC	4 cut(s)	151, 524, 527, 688
Bme1390I	CCNGG	2 cut(s)	632, 914
Bme18I	GGWCC	3 cut(s)	256, 588, 827
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	6 cut(s)	198, 256, 467, 588, 726, 827
BmiI	GGNNCC	2 cut(s)	421, 749
BmrFI	CCNGG	2 cut(s)	632, 914
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	553
BpuMI	CCSGG	1 cut(s)	632
Bsa29I	ATCGAT	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	601
BsaBI	GATNNNNATC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	103, 913
BsaWI	WCCGGW	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 265, 735
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	548, 830
Bse3DI	GCAATG	4 cut(s)	145, 462, 555, 681
Bse8I	GATNNNNATC	1 cut(s)	77
BseAI	TCCGGA	2 cut(s)	366, 396
BseBI	CCWGG	1 cut(s)	914
BseCI	ATCGAT	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	103, 913
BseGI	GGATG	2 cut(s)	78, 712
BseJI	GATNNNNATC	1 cut(s)	77
BseLI	CCNNNNNNNGG	3 cut(s)	232, 265, 735
BseMI	GCAATG	4 cut(s)	145, 462, 555, 681
BseMII	CTCAG	1 cut(s)	891
BseNI	ACTGG	2 cut(s)	548, 830
BseXI	GCAGC	3 cut(s)	161, 534, 698
BseYI	CCCAGC	2 cut(s)	238, 735
BsgI	GTGCAG	2 cut(s)	87, 705
BshFI	GGCC	4 cut(s)	199, 468, 507, 728
BshVI	ATCGAT	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	539
BsiHKCI	CYCGRG	1 cut(s)	532
BsiSI	CCGG	4 cut(s)	254, 367, 397, 632
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	3 cut(s)	232, 265, 735
BsmFI	GGGAC	1 cut(s)	568
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	4 cut(s)	199, 468, 507, 728
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp13I	TCCGGA	2 cut(s)	366, 396
Bsp1407I	TGTACA	2 cut(s)	75, 459
Bsp143I	GATC	2 cut(s)	262, 864
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	526
BspANI	GGCC	4 cut(s)	199, 468, 507, 728
BspCNI	CTCAG	1 cut(s)	892
BspDI	ATCGAT	1 cut(s)	115
BspEI	TCCGGA	2 cut(s)	366, 396
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	421, 749
BspMI	ACCTGC	1 cut(s)	909
BspPI	GGATC	1 cut(s)	859
BsrDI	GCAATG	4 cut(s)	145, 462, 555, 681
BsrFI	RCCGGY	1 cut(s)	253
BsrGI	TGTACA	2 cut(s)	75, 459
BsrI	ACTGG	2 cut(s)	548, 830
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	103, 913
BssMI	GATC	2 cut(s)	262, 864
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	914
Bst4CI	ACNGT	1 cut(s)	619
BstAUI	TGTACA	2 cut(s)	75, 459
BstBAI	YACGTR	1 cut(s)	601
BstDEI	CTNAG	2 cut(s)	481, 900
BstDSI	CCRYGG	1 cut(s)	103
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	78, 712
BstH2I	RGCGCY	1 cut(s)	712
BstHHI	GCGC	2 cut(s)	674, 711
BstKTI	GATC	2 cut(s)	265, 867
BstMBI	GATC	2 cut(s)	262, 864
BstMWI	GCNNNNNNNGC	8 cut(s)	149, 170, 534, 660, 669, 692, 701, 881
BstNI	CCWGG	1 cut(s)	914
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	630, 912
BstV1I	GCAGC	3 cut(s)	161, 534, 698
Bsu15I	ATCGAT	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	4 cut(s)	199, 468, 507, 728
BsuTUI	ATCGAT	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	78, 712
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	3 cut(s)	87, 541, 624
BveI	ACCTGC	1 cut(s)	909
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	2 cut(s)	674, 711
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	6 cut(s)	198, 256, 467, 588, 726, 827
ClaI	ATCGAT	1 cut(s)	115
CseI	GACGC	2 cut(s)	217, 565
Csp6I	GTAC	2 cut(s)	76, 460
CviAII	CATG	8 cut(s)	104, 109, 322, 377, 494, 512, 723, 862
CviQI	GTAC	2 cut(s)	76, 460
DdeI	CTNAG	2 cut(s)	481, 900
DpnI	GATC	2 cut(s)	264, 866
DpnII	GATC	2 cut(s)	262, 864
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	3 cut(s)	256, 588, 827
Eco88I	CYCGRG	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	912
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	8 cut(s)	107, 112, 325, 380, 497, 515, 726, 865
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	8 cut(s)	103, 108, 321, 376, 493, 511, 722, 861
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	150, 523, 526, 687
FokI	GGATG	2 cut(s)	85, 699
Fsp4HI	GCNGC	4 cut(s)	150, 523, 526, 687
FspBI	CTAG	6 cut(s)	248, 425, 717, 752, 822, 896
GlaI	GCGC	2 cut(s)	673, 710
GluI	GCNGC	4 cut(s)	150, 523, 526, 687
GsaI	CCCAGC	2 cut(s)	242, 739
HaeII	RGCGCY	1 cut(s)	712
HaeIII	GGCC	4 cut(s)	199, 468, 507, 728
HapII	CCGG	4 cut(s)	254, 367, 397, 632
HgaI	GACGC	2 cut(s)	217, 565
HhaI	GCGC	2 cut(s)	674, 711
Hin1II	CATG	8 cut(s)	107, 112, 325, 380, 497, 515, 726, 865
Hin6I	GCGC	2 cut(s)	672, 709
HinP1I	GCGC	2 cut(s)	672, 709
HinfI	GANTC	3 cut(s)	94, 112, 400
HpaII	CCGG	4 cut(s)	254, 367, 397, 632
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	6 cut(s)	182, 248, 322, 367, 397, 783
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	2 cut(s)	734, 875
HpyAV	CCTTC	2 cut(s)	16, 403
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	9 cut(s)	55, 68, 149, 679, 686, 704, 722, 802, 861
HpyF10VI	GCNNNNNNNGC	8 cut(s)	149, 170, 534, 660, 669, 692, 701, 881
HpyF3I	CTNAG	2 cut(s)	481, 900
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	8 cut(s)	107, 112, 325, 380, 497, 515, 726, 865
HspAI	GCGC	2 cut(s)	672, 709
Kpn2I	TCCGGA	2 cut(s)	366, 396
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	262, 864
LmnI	GCTCC	3 cut(s)	169, 440, 753
Lsp1109I	GCAGC	3 cut(s)	161, 534, 698
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	6 cut(s)	248, 425, 717, 752, 822, 896
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	5 cut(s)	340, 427, 603, 613, 838
MalI	GATC	2 cut(s)	264, 866
MboI	GATC	2 cut(s)	262, 864
MboII	GAAGA	2 cut(s)	31, 634
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	4 cut(s)	56, 351, 786, 876
MlyI	GAGTC	2 cut(s)	88, 409
MroI	TCCGGA	2 cut(s)	366, 396
MseI	TTAA	3 cut(s)	387, 477, 849
MslI	CAYNNNNRTG	2 cut(s)	233, 717
MspI	CCGG	4 cut(s)	254, 367, 397, 632
MspR9I	CCNGG	2 cut(s)	632, 914
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	914
MwoI	GCNNNNNNNGC	8 cut(s)	149, 170, 534, 660, 669, 692, 701, 881
NciI	CCSGG	1 cut(s)	632
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	262, 864
NlaIII	CATG	8 cut(s)	107, 112, 325, 380, 497, 515, 726, 865
NlaIV	GGNNCC	2 cut(s)	421, 749
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	532
PagI	TCATGA	1 cut(s)	321
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	151, 524, 527, 688
PleI	GAGTC	2 cut(s)	88, 408
PpsI	GAGTC	2 cut(s)	88, 408
Ppu21I	YACGTR	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	912
PspFI	CCCAGC	2 cut(s)	238, 735
PspGI	CCWGG	1 cut(s)	912
PspN4I	GGNNCC	2 cut(s)	421, 749
PspPI	GGNCC	6 cut(s)	198, 256, 467, 588, 726, 827
PspXI	VCTCGAGB	1 cut(s)	532
RsaI	GTAC	2 cut(s)	77, 461
RsaNI	GTAC	2 cut(s)	76, 460
RseI	CAYNNNNRTG	2 cut(s)	233, 717
SaqAI	TTAA	3 cut(s)	387, 477, 849
SatI	GCNGC	4 cut(s)	150, 523, 526, 687
Sau3AI	GATC	2 cut(s)	262, 864
Sau96I	GGNCC	6 cut(s)	198, 256, 467, 588, 726, 827
SchI	GAGTC	2 cut(s)	88, 409
ScrFI	CCNGG	2 cut(s)	632, 914
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	1 cut(s)	311
Sfr274I	CTCGAG	1 cut(s)	532
SinI	GGWCC	3 cut(s)	256, 588, 827
SlaI	CTCGAG	1 cut(s)	532
SmiMI	CAYNNNNRTG	2 cut(s)	233, 717
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
Sse9I	AATT	4 cut(s)	56, 351, 786, 876
SsiI	CCGC	1 cut(s)	526
SspMI	CTAG	6 cut(s)	248, 425, 717, 752, 822, 896
StyD4I	CCNGG	2 cut(s)	630, 912
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	4 cut(s)	5, 115, 533, 665
TasI	AATT	4 cut(s)	56, 351, 786, 876
TatI	WGTACW	2 cut(s)	75, 459
TauI	GCSGC	1 cut(s)	528
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	3 cut(s)	387, 477, 849
Tru9I	TTAA	3 cut(s)	387, 477, 849
TscAI	CASTG	3 cut(s)	94, 548, 624
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	3 cut(s)	149, 522, 686
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	5 cut(s)	125, 302, 338, 528, 830
TspGWI	ACGGA	2 cut(s)	346, 516
TspRI	CASTG	3 cut(s)	94, 548, 624
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	3 cut(s)	256, 588, 827
XagI	CCTNNNNNAGG	1 cut(s)	263
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	532
XspI	CTAG	6 cut(s)	248, 425, 717, 752, 822, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.