Rh2AG083600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013852
Physical Location & Seq
Reverse (-)
7075856 .. 7076242
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG083600.1

Sequence Viewer

Length: 387 bp
ATGCTGTATACCATTGGCCACTGGCCAGCAGAAAAGAGCCTAGCTTCCTGGCATAACTTGCCACCACTCTATTATCGTAACTGTTGCAGCTGCATCTTCTGCTTGGTAATTGCCTTCCACATCATGGTACTCACACTGGTGTGTTTGGTTTGTTGTTACAAGTACAAGAAGACACTTCGACATATTCTTCCTGGGCCACATTTATTCGTCGAGGACTCAAATTTTTGGCAAAATTTTCCTAGTTACAGGCCATCCTGTCTTGCACTGTTTTTGTTTTTTGTTTTTTTTATTGTTCAATCACACGGTGTCCTCAAAGGCTTCGTAGGCCCAGAGACTAATCCGTGCTTGGGAGATCTTGTCACTGCTTCTTCGTTGAACTTATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.62

Weight (kDa)

8.4

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08290 AT4G08290
fragaria_vesca FvH4_2g26690 FvH4_2g26690
prunus_persica Prupe.1G500600_v2.0.a1
pyrus_communis pycom08g14200
rosa_chinensis RchiOBHm_Chr6g0295531
rosa_laevigata RLG00000011793
rosa_multiflora Rmu_sc0005000.1_g000013
rosa_roxburghii Rroxscaffold_7G00172390
rosa_rugosa Rorug06G0251700
rosa_samantha Rh2AG083600 Rh6AG364900 Rh6BG373300 Rh6CG379500 Rh6DG366000
rosa_wichuraiana Rw6G031870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 124
AccI GTMKAC 1 cut(s) 8
AcoI YGGCCR 2 cut(s) 16, 23
AcsI RAATTY 2 cut(s) 220, 232
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 2 cut(s) 129, 164
AfiI CCNNNNNNNGG 2 cut(s) 124, 347
AgsI TTSAA 2 cut(s) 296, 376
AjnI CCWGG 2 cut(s) 47, 190
AleI CACNNNNGTG 2 cut(s) 137, 139
AluBI AGCT 2 cut(s) 44, 90
AluI AGCT 2 cut(s) 44, 90
Alw26I GTCTC 1 cut(s) 326
AoxI GGCC 5 cut(s) 16, 23, 194, 248, 325
ApeKI GCWGC 2 cut(s) 87, 90
ApoI RAATTY 2 cut(s) 220, 232
AspS9I GGNCC 2 cut(s) 194, 326
BalI TGGCCA 2 cut(s) 18, 25
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 77, 99
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 49, 192
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 3 cut(s) 41, 240, 385
BglII AGATCT 1 cut(s) 352
BisI GCNGC 2 cut(s) 88, 91
BlsI GCNGC 2 cut(s) 89, 92
Bme1390I CCNGG 2 cut(s) 49, 192
BmgT120I GGNCC 2 cut(s) 194, 326
BmrFI CCNGG 2 cut(s) 49, 192
BmsI GCATC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 347
Bse1I ACTGG 2 cut(s) 26, 141
BseBI CCWGG 2 cut(s) 49, 192
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 124, 347
BseNI ACTGG 2 cut(s) 26, 141
BseXI GCAGC 2 cut(s) 77, 99
BshFI GGCC 5 cut(s) 18, 25, 196, 250, 327
BslI CCNNNNNNNGG 2 cut(s) 124, 347
BsmAI GTCTC 1 cut(s) 326
BsnI GGCC 5 cut(s) 18, 25, 196, 250, 327
Bsp143I GATC 1 cut(s) 352
BspANI GGCC 5 cut(s) 18, 25, 196, 250, 327
BsrI ACTGG 2 cut(s) 26, 141
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 352
BssNAI GTATAC 1 cut(s) 9
Bst1107I GTATAC 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 49, 192
Bst4CI ACNGT 3 cut(s) 83, 267, 305
BstAPI GCANNNNNTGC 2 cut(s) 58, 99
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 3 cut(s) 58, 99, 324
BstNI CCWGG 2 cut(s) 49, 192
BstSCI CCNGG 2 cut(s) 47, 190
BstV1I GCAGC 2 cut(s) 77, 99
BstV2I GAAGAC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BstZ17I GTATAC 1 cut(s) 9
BsuRI GGCC 5 cut(s) 18, 25, 196, 250, 327
BtsCI GGATG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 4 cut(s) 19, 134, 263, 360
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 194, 326
Csp6I GTAC 2 cut(s) 128, 163
CviAII CATG 1 cut(s) 124
CviJI RGCY 9 cut(s) 18, 25, 39, 44, 90, 196, 250, 318, 327
CviKI_1 RGCY 9 cut(s) 18, 25, 39, 44, 90, 196, 250, 318, 327
CviQI GTAC 2 cut(s) 128, 163
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 2 cut(s) 16, 23
EcoRII CCWGG 2 cut(s) 47, 190
FaeI CATG 1 cut(s) 127
FaiI YATR 4 cut(s) 9, 54, 125, 183
FatI CATG 1 cut(s) 123
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 88, 91
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 88, 91
FspBI CTAG 3 cut(s) 41, 240, 385
GluI GCNGC 2 cut(s) 88, 91
HaeIII GGCC 5 cut(s) 18, 25, 196, 250, 327
Hin1II CATG 1 cut(s) 127
HinfI GANTC 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 83, 267, 305
HpyCH4V TGCA 3 cut(s) 87, 93, 263
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 99, 324
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 352
Lsp1109I GCAGC 2 cut(s) 77, 99
LweI GCATC 1 cut(s) 102
MaeI CTAG 3 cut(s) 41, 240, 385
MaeIII GTNAC 4 cut(s) 77, 155, 242, 358
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 4 cut(s) 88, 179, 181, 360
MflI RGATCY 1 cut(s) 352
MlsI TGGCCA 2 cut(s) 18, 25
MluCI AATT 3 cut(s) 108, 220, 232
MluNI TGGCCA 2 cut(s) 18, 25
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 2 cut(s) 205, 320
Mox20I TGGCCA 2 cut(s) 18, 25
MscI TGGCCA 2 cut(s) 18, 25
MslI CAYNNNNRTG 2 cut(s) 137, 139
Msp20I TGGCCA 2 cut(s) 18, 25
MspA1I CMGCKG 1 cut(s) 90
MspR9I CCNGG 2 cut(s) 49, 192
MvaI CCWGG 2 cut(s) 49, 192
MwoI GCNNNNNNNGC 3 cut(s) 58, 99, 324
NdeII GATC 1 cut(s) 352
NlaIII CATG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 358
OliI CACNNNNGTG 2 cut(s) 137, 139
PflMI CCANNNNNTGG 1 cut(s) 124
PkrI GCNGC 2 cut(s) 89, 92
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 47, 190
PspGI CCWGG 2 cut(s) 47, 190
PspPI GGNCC 2 cut(s) 194, 326
PsuI RGATCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 90
RsaI GTAC 2 cut(s) 129, 164
RsaNI GTAC 2 cut(s) 128, 163
RseI CAYNNNNRTG 2 cut(s) 137, 139
SatI GCNGC 2 cut(s) 88, 91
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 194, 326
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 49, 192
SetI ASST 2 cut(s) 46, 92
SfaNI GCATC 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 137, 139
Sse9I AATT 3 cut(s) 108, 220, 232
SspMI CTAG 3 cut(s) 41, 240, 385
StyD4I CCNGG 2 cut(s) 47, 190
TaaI ACNGT 3 cut(s) 83, 267, 305
TaqI TCGA 2 cut(s) 178, 210
TasI AATT 3 cut(s) 108, 220, 232
TatI WGTACW 1 cut(s) 162
TscAI CASTG 4 cut(s) 26, 141, 270, 367
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 87, 90
Tsp45I GTSAC 1 cut(s) 358
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 4 cut(s) 26, 141, 270, 367
Van91I CCANNNNNTGG 1 cut(s) 124
XapI RAATTY 2 cut(s) 220, 232
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 3 cut(s) 41, 240, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.