Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0013852

Physical Location & Seq

Genomic Coordinates Reverse (-)

13263304 .. 13265642

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g14200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGAGATGATGAGCAGAACAACTCAGGTGGGAGGTTTCGTGTGATGATGAAGAAGCTGAAACCTTATTTGCTGGTGGTGAGCTTGCAATTTGGGAGTGCAGGGATGTACATAATCAGCATGGCCACTCTCAATCATGGCATGAATCGATATGTTCTCATCGTCTATCGCAATGCTACTGCAGCACTTGTCCTCGCTCCTTTTGCCTTGGTTCTTGAAAGGGTCGAAACTGTAAAAATCAAAGAGGTGCGAAGTCAAGCCAAGGTGATAGGAACCCTAGTAACCTTTGCTGGTGCTTTGCTGATGACACTGTACAAAGGCCCTGTCATTGACCTCCTGTGGTCGCACAAAACCAGCAGCCACCATGAAAGTAGCAGCACCACTATAACCTCCAACCAACACTGGATAGCCGGGACACTCTTTATCCTCCTGGGTAGTGTTGCCTGGTCCTGTTTCTACGTATTGCAATCTATAACAGTGAAGAAATACCCAGCAAACATCTCACTTTCCTGCTTTATATGCTTGGCGGGAGCGTTGCAAGGCTCAGTTGTAGCATTCACTGTAGAGCGTTGCCCTAGTGCATGGGCGGTTGGATGGGATTCAAGGCTCCTTGCACCTCTCTACACGGGACTAATTAGCTCTGGGATTACATATTACGTGCAAGGCTTGGTTATGAAGACTAGAGGCCCGGTTTTTGTAACGGCTTTTAACCCTCTCTGCATGATTATCGTGTCCATTCTGGGTTCCATTATTCTAGCTGAGAAACTTCACCTTGGCAGTATCATTGGAGGCATGGTCATCGCATTTGGCCTTTATTCTGTGGTGTGGGGTAAAAGCAAGGATTATGGCACTAACCCAGCTGTGCAATCCAATACTACTGTGAAGGATGAAGCTCAGGAGTTACCAATTATTAATGCAAACGCTATCAGTGGTGCAAAATTGGTGATTGATAAAAATAGCATCGACCAGCCATCCCAAATGCAATTAAAGACTGTCCAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

335

Amino Acids

36.26

Weight (kDa)

9.35

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08290 AT4G08290
fragaria_vesca	FvH4_2g26690 FvH4_2g26690
prunus_persica	Prupe.1G500600_v2.0.a1
pyrus_communis	pycom08g14200
rosa_chinensis	RchiOBHm_Chr6g0295531
rosa_laevigata	RLG00000011793
rosa_multiflora	Rmu_sc0005000.1_g000013
rosa_roxburghii	Rroxscaffold_7G00172390
rosa_rugosa	Rorug06G0251700
rosa_samantha	Rh2AG083600 Rh6AG364900 Rh6BG373300 Rh6CG379500 Rh6DG366000
rosa_wichuraiana	Rw6G031870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	527, 587
AcoI	YGGCCR	1 cut(s)	123
AfaI	GTAC	2 cut(s)	110, 314
AgsI	TTSAA	2 cut(s)	218, 603
AjnI	CCWGG	2 cut(s)	429, 443
AluBI	AGCT	6 cut(s)	58, 84, 639, 758, 860, 893
AluI	AGCT	6 cut(s)	58, 84, 639, 758, 860, 893
AoxI	GGCC	4 cut(s)	123, 319, 685, 808
ApeKI	GCWGC	3 cut(s)	182, 357, 375
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
AseI	ATTAAT	1 cut(s)	912
AspS9I	GGNCC	3 cut(s)	320, 447, 686
AsuC2I	CCSGG	2 cut(s)	412, 689
AsuHPI	GGTGA	4 cut(s)	91, 277, 761, 955
AvaII	GGWCC	1 cut(s)	447
BalI	TGGCCA	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	683
BbvI	GCAGC	3 cut(s)	194, 369, 387
BccI	CCATC	2 cut(s)	588, 979
BceAI	ACGGC	1 cut(s)	717
BcgI	CGANNNNNNTGC	4 cut(s)	709, 743, 781, 815
BciT130I	CCWGG	2 cut(s)	431, 445
BcnI	CCSGG	2 cut(s)	412, 689
BfaI	CTAG	4 cut(s)	278, 576, 681, 755
BfmI	CTRYAG	2 cut(s)	180, 561
BisI	GCNGC	3 cut(s)	183, 358, 376
BlsI	GCNGC	3 cut(s)	184, 359, 377
Bme1390I	CCNGG	4 cut(s)	412, 431, 445, 689
Bme18I	GGWCC	1 cut(s)	447
BmgT120I	GGNCC	3 cut(s)	320, 447, 686
BmiI	GGNNCC	3 cut(s)	274, 608, 745
BmrFI	CCNGG	4 cut(s)	412, 431, 445, 689
BmsI	GCATC	1 cut(s)	969
BpiI	GAAGAC	1 cut(s)	683
Bpu10I	CCTNAGC	1 cut(s)	894
BpuMI	CCSGG	2 cut(s)	412, 689
Bsa29I	ATCGAT	1 cut(s)	148
BsaAI	YACGTR	2 cut(s)	460, 658
BsaJI	CCNNGG	4 cut(s)	207, 261, 430, 772
BsaXI	ACNNNNNCTCC	4 cut(s)	25, 55, 780, 810
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	431, 445
BseCI	ATCGAT	1 cut(s)	148
BseDI	CCNNGG	4 cut(s)	207, 261, 430, 772
BseGI	GGATG	4 cut(s)	111, 599, 892, 971
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	4 cut(s)	39, 558, 750, 908
BseNI	ACTGG	1 cut(s)	407
BseXI	GCAGC	3 cut(s)	194, 369, 387
BseYI	CCCAGC	2 cut(s)	490, 856
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	125, 321, 687, 810
BshVI	ATCGAT	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	411, 689
BslFI	GGGAC	2 cut(s)	427, 642
BsmFI	GGGAC	2 cut(s)	427, 642
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	4 cut(s)	125, 321, 687, 810
Bsp1407I	TGTACA	2 cut(s)	108, 312
BspACI	CCGC	2 cut(s)	527, 587
BspANI	GGCC	4 cut(s)	125, 321, 687, 810
BspCNI	CTCAG	4 cut(s)	38, 557, 751, 907
BspDI	ATCGAT	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	274, 608, 745
BspMAI	CTGCAG	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	178
BsrGI	TGTACA	2 cut(s)	108, 312
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	4 cut(s)	207, 261, 430, 772
BssT1I	CCWWGG	3 cut(s)	207, 261, 772
Bst2UI	CCWGG	2 cut(s)	431, 445
Bst4CI	ACNGT	6 cut(s)	232, 312, 478, 562, 880, 994
BstAUI	TGTACA	2 cut(s)	108, 312
BstBAI	YACGTR	2 cut(s)	460, 658
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	4 cut(s)	25, 544, 759, 894
BstF5I	GGATG	4 cut(s)	111, 599, 892, 971
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 203, 519
BstNI	CCWGG	2 cut(s)	431, 445
BstSCI	CCNGG	4 cut(s)	410, 429, 443, 687
BstSFI	CTRYAG	2 cut(s)	180, 561
BstSNI	TACGTA	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	194, 369, 387
BstV2I	GAAGAC	1 cut(s)	683
Bsu15I	ATCGAT	1 cut(s)	148
BsuRI	GGCC	4 cut(s)	125, 321, 687, 810
BsuTUI	ATCGAT	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	784
BtsCI	GGATG	4 cut(s)	111, 599, 892, 971
BtsIMutI	CAGTG	5 cut(s)	308, 400, 483, 558, 934
Cac8I	GCNNGC	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	320, 447, 686
ClaI	ATCGAT	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	109, 313
CspCI	CAANNNNNGTGG	2 cut(s)	10, 45
CviAII	CATG	7 cut(s)	121, 137, 142, 365, 582, 721, 793
CviQI	GTAC	2 cut(s)	109, 313
DdeI	CTNAG	4 cut(s)	25, 544, 759, 894
EaeI	YGGCCR	1 cut(s)	123
Eco105I	TACGTA	1 cut(s)	460
Eco130I	CCWWGG	3 cut(s)	207, 261, 772
Eco47I	GGWCC	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	429, 443
EcoT14I	CCWWGG	3 cut(s)	207, 261, 772
ErhI	CCWWGG	3 cut(s)	207, 261, 772
FaeI	CATG	7 cut(s)	124, 140, 145, 368, 585, 724, 796
FaqI	GGGAC	2 cut(s)	427, 642
FatI	CATG	7 cut(s)	120, 136, 141, 364, 581, 720, 792
FauI	CCCGC	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	183, 358, 376
FokI	GGATG	4 cut(s)	118, 606, 899, 958
Fsp4HI	GCNGC	3 cut(s)	183, 358, 376
FspBI	CTAG	4 cut(s)	278, 576, 681, 755
GluI	GCNGC	3 cut(s)	183, 358, 376
GsaI	CCCAGC	2 cut(s)	494, 860
HaeIII	GGCC	4 cut(s)	125, 321, 687, 810
HapII	CCGG	2 cut(s)	411, 689
Hin1II	CATG	7 cut(s)	124, 140, 145, 368, 585, 724, 796
HinfI	GANTC	2 cut(s)	145, 599
HpaII	CCGG	2 cut(s)	411, 689
HphI	GGTGA	4 cut(s)	91, 277, 761, 955
Hpy188III	TCNNGA	2 cut(s)	215, 896
HpyAV	CCTTC	1 cut(s)	877
HpyCH4III	ACNGT	6 cut(s)	232, 312, 478, 562, 880, 994
HpyCH4IV	ACGT	2 cut(s)	459, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 203, 519
HpyF3I	CTNAG	4 cut(s)	25, 544, 759, 894
HpySE526I	ACGT	2 cut(s)	459, 657
Hsp92II	CATG	7 cut(s)	124, 140, 145, 368, 585, 724, 796
LmnI	GCTCC	3 cut(s)	202, 530, 612
Lsp1109I	GCAGC	3 cut(s)	194, 369, 387
LweI	GCATC	1 cut(s)	969
MaeI	CTAG	4 cut(s)	278, 576, 681, 755
MaeII	ACGT	2 cut(s)	459, 657
MaeIII	GTNAC	3 cut(s)	280, 697, 900
MboII	GAAGA	3 cut(s)	64, 493, 688
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	5 cut(s)	89, 633, 906, 938, 983
MluNI	TGGCCA	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	417, 571
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
MseI	TTAA	3 cut(s)	708, 912, 986
Msp20I	TGGCCA	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	2 cut(s)	411, 689
MspR9I	CCNGG	4 cut(s)	412, 431, 445, 689
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	2 cut(s)	431, 445
MwoI	GCNNNNNNNGC	3 cut(s)	182, 203, 519
NciI	CCSGG	2 cut(s)	412, 689
NlaIII	CATG	7 cut(s)	124, 140, 145, 368, 585, 724, 796
NlaIV	GGNNCC	3 cut(s)	274, 608, 745
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	145, 599
PkrI	GCNGC	3 cut(s)	184, 359, 377
Ppu21I	YACGTR	2 cut(s)	460, 658
PshBI	ATTAAT	1 cut(s)	912
Psp6I	CCWGG	2 cut(s)	429, 443
PspFI	CCCAGC	2 cut(s)	490, 856
PspGI	CCWGG	2 cut(s)	429, 443
PspN4I	GGNNCC	3 cut(s)	274, 608, 745
PspPI	GGNCC	3 cut(s)	320, 447, 686
PstI	CTGCAG	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	2 cut(s)	110, 314
RsaNI	GTAC	2 cut(s)	109, 313
SaqAI	TTAA	3 cut(s)	708, 912, 986
SatI	GCNGC	3 cut(s)	183, 358, 376
Sau96I	GGNCC	3 cut(s)	320, 447, 686
ScrFI	CCNGG	4 cut(s)	412, 431, 445, 689
SfaNI	GCATC	1 cut(s)	969
SfcI	CTRYAG	2 cut(s)	180, 561
SinI	GGWCC	1 cut(s)	447
SnaBI	TACGTA	1 cut(s)	460
Sse9I	AATT	5 cut(s)	89, 633, 906, 938, 983
SsiI	CCGC	2 cut(s)	527, 587
SspMI	CTAG	4 cut(s)	278, 576, 681, 755
StyD4I	CCNGG	4 cut(s)	410, 429, 443, 687
StyI	CCWWGG	3 cut(s)	207, 261, 772
TaaI	ACNGT	6 cut(s)	232, 312, 478, 562, 880, 994
TaiI	ACGT	2 cut(s)	462, 660
TaqI	TCGA	3 cut(s)	148, 225, 963
TasI	AATT	5 cut(s)	89, 633, 906, 938, 983
TatI	WGTACW	2 cut(s)	108, 312
TfiI	GAWTC	2 cut(s)	145, 599
Tru1I	TTAA	3 cut(s)	708, 912, 986
Tru9I	TTAA	3 cut(s)	708, 912, 986
TscAI	CASTG	5 cut(s)	315, 407, 483, 565, 934
TseI	GCWGC	3 cut(s)	182, 357, 375
TspDTI	ATGAA	5 cut(s)	65, 158, 381, 689, 903
TspRI	CASTG	5 cut(s)	315, 407, 483, 565, 934
VpaK11BI	GGWCC	1 cut(s)	447
VspI	ATTAAT	1 cut(s)	912
XspI	CTAG	4 cut(s)	278, 576, 681, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.