Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Forward (+)

6100714 .. 6101864

Gene Structure 1151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGTCTCTTCAACAAACTCTATTCTCTCTTCAATCCAAACTCCCACCATCCTCCTTCCAAATCGCCAGATCTCTCCCACTCCGAAAAACCTTCCCAATCCGAATCAACAACGGTGGAAACGCCGCCGGAGCAAGAATGTCAGCCACCGCAGCATCAAGCTACGCGATGGCATTAGCAGACGTCGCGAAAAGAAACGACACAATGGAATTAACAGTCACAGACATCGAGAAGCTCGAACAAGTCTTCTCAGATCCACAAGTACTAAACTTCTTCGCGAATCCAACAATCACCGTCGAGAAGAAACGTCAAGTCATCGACGACATAGTGAAATCGTCGTCTCTTCAATCTCACACATCTAACTTCCTCAACGTCCTCGTCGACGCGAATCGGATCAATATCGTGACGGAGATCGTTAAGGAGTTTGAGTTGGTTTACAATAAGCTAACGGATACACAATTGGCGGAGGTTAGGTCGGTGGTGAAATTGGAAGCGCCGCAATTAGCTCAGATTGCGAAACAGGTTCAGAAGTTAACCGGAGCTAAGAATGTTCGGGTTAAGACGGTTATTGATGCGAGTCTTGTGGCTGGTTTTACGATTCGGTATGGTGAATCCGGTTCGAAGCTTATTGATATGAGTGTGAAGAAACAGCTTGAAGATATTGCTTCTCAGCTTGAACTTGGTGAGATTCAATTAGCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

234

Amino Acids

25.67

Weight (kDa)

9.05

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	52 - 225	5.9e-43	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	4 cut(s)	167, 188, 278, 386
AciI	CCGC	4 cut(s)	126, 150, 464, 497
AclWI	GGATC	2 cut(s)	248, 401
AcyI	GRCGYC	2 cut(s)	5, 183
AfaI	GTAC	1 cut(s)	264
AgsI	TTSAA	6 cut(s)	14, 35, 347, 656, 677, 692
AluBI	AGCT	9 cut(s)	162, 235, 445, 506, 542, 625, 652, 673, 698
AluI	AGCT	9 cut(s)	162, 235, 445, 506, 542, 625, 652, 673, 698
Alw26I	GTCTC	2 cut(s)	12, 345
AlwI	GGATC	2 cut(s)	248, 401
ApeKI	GCWGC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	496
AsuHPI	GGTGA	4 cut(s)	283, 493, 620, 695
AsuII	TTCGAA	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	2 cut(s)	58, 163
BciVI	GTATCC	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	12, 345
BfoI	RGCGCY	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	445
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	3 cut(s)	126, 153, 497
BlsI	GCNGC	3 cut(s)	127, 154, 498
BmcAI	AGTACT	1 cut(s)	264
BmsI	GCATC	2 cut(s)	164, 562
BpiI	GAAGAC	1 cut(s)	238
Bpu14I	TTCGAA	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	398
BsaHI	GRCGYC	2 cut(s)	5, 183
BsaWI	WCCGGW	2 cut(s)	536, 614
BsaXI	ACNNNNNCTCC	4 cut(s)	413, 443, 458, 488
Bse8I	GATNNNNATC	1 cut(s)	398
BseGI	GGATG	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	398
BseMII	CTCAG	3 cut(s)	264, 521, 683
BseXI	GCAGC	1 cut(s)	164
Bsh1236I	CGCG	4 cut(s)	167, 188, 278, 386
BsiSI	CCGG	3 cut(s)	129, 537, 615
BsmAI	GTCTC	2 cut(s)	12, 345
BsmBI	CGTCTC	2 cut(s)	12, 345
Bsp119I	TTCGAA	1 cut(s)	620
Bsp143I	GATC	4 cut(s)	71, 253, 393, 411
Bsp68I	TCGCGA	2 cut(s)	188, 278
BspACI	CCGC	4 cut(s)	126, 150, 464, 497
BspCNI	CTCAG	3 cut(s)	263, 520, 682
BspFNI	CGCG	4 cut(s)	167, 188, 278, 386
BspPI	GGATC	2 cut(s)	248, 401
BspT104I	TTCGAA	1 cut(s)	620
BssMI	GATC	4 cut(s)	71, 253, 393, 411
BssNI	GRCGYC	2 cut(s)	5, 183
Bst4CI	ACNGT	4 cut(s)	116, 217, 295, 565
Bst6I	CTCTTC	3 cut(s)	15, 36, 348
BstACI	GRCGYC	2 cut(s)	5, 183
BstBI	TTCGAA	1 cut(s)	620
BstDEI	CTNAG	4 cut(s)	250, 507, 543, 669
BstF5I	GGATG	1 cut(s)	50
BstFNI	CGCG	4 cut(s)	167, 188, 278, 386
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	4 cut(s)	74, 256, 396, 414
BstMAI	GTCTC	2 cut(s)	12, 345
BstMBI	GATC	4 cut(s)	71, 253, 393, 411
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 152, 185, 512
BstUI	CGCG	4 cut(s)	167, 188, 278, 386
BstV1I	GCAGC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	71, 253
BstYI	RGATCY	2 cut(s)	71, 253
BsuI	GTATCC	1 cut(s)	445
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	50
BtuMI	TCGCGA	2 cut(s)	188, 278
CfoI	GCGC	1 cut(s)	496
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	263
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	4 cut(s)	250, 507, 543, 669
DpnI	GATC	4 cut(s)	73, 255, 395, 413
DpnII	GATC	4 cut(s)	71, 253, 393, 411
Eam1104I	CTCTTC	3 cut(s)	15, 36, 348
EarI	CTCTTC	3 cut(s)	15, 36, 348
EciI	GGCGGA	1 cut(s)	479
Esp3I	CGTCTC	2 cut(s)	12, 345
FaiI	YATR	3 cut(s)	326, 606, 635
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	3 cut(s)	126, 153, 497
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	3 cut(s)	126, 153, 497
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	3 cut(s)	126, 153, 497
HaeII	RGCGCY	1 cut(s)	497
HapII	CCGG	3 cut(s)	129, 537, 615
HgaI	GACGC	1 cut(s)	392
HhaI	GCGC	1 cut(s)	496
Hin1I	GRCGYC	2 cut(s)	5, 183
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	2 cut(s)	382, 534
HindII	GTYRAC	2 cut(s)	382, 534
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	7 cut(s)	105, 280, 388, 577, 598, 611, 688
HpaI	GTTAAC	1 cut(s)	534
HpaII	CCGG	3 cut(s)	129, 537, 615
HphI	GGTGA	4 cut(s)	283, 493, 620, 695
Hpy166II	GTNNAC	3 cut(s)	382, 436, 534
Hpy188I	TCNGA	6 cut(s)	86, 104, 253, 393, 510, 528
Hpy188III	TCNNGA	5 cut(s)	187, 229, 277, 298, 403
Hpy8I	GTNNAC	3 cut(s)	382, 436, 534
Hpy99I	CGWCG	6 cut(s)	188, 299, 323, 340, 383, 386
HpyAV	CCTTC	2 cut(s)	67, 103
HpyCH4III	ACNGT	4 cut(s)	116, 217, 295, 565
HpyCH4IV	ACGT	3 cut(s)	183, 307, 372
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 152, 185, 512
HpyF3I	CTNAG	4 cut(s)	250, 507, 543, 669
HpySE526I	ACGT	3 cut(s)	183, 307, 372
Hsp92I	GRCGYC	2 cut(s)	5, 183
HspAI	GCGC	1 cut(s)	494
KspAI	GTTAAC	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	71, 253, 393, 411
LmnI	GCTCC	2 cut(s)	131, 539
LpnPI	CCDG	6 cut(s)	82, 142, 506, 550, 573, 628
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	2 cut(s)	164, 562
MaeII	ACGT	3 cut(s)	183, 307, 372
MaeIII	GTNAC	2 cut(s)	217, 403
MalI	GATC	4 cut(s)	73, 255, 395, 413
MboI	GATC	4 cut(s)	71, 253, 393, 411
MboII	GAAGA	7 cut(s)	23, 238, 265, 313, 335, 655, 668
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	2 cut(s)	71, 253
MluCI	AATT	5 cut(s)	209, 458, 485, 500, 692
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	4 cut(s)	64, 377, 386, 460
MseI	TTAA	4 cut(s)	212, 417, 533, 558
MspI	CCGG	3 cut(s)	129, 537, 615
MunI	CAATTG	1 cut(s)	458
MvnI	CGCG	4 cut(s)	167, 188, 278, 386
MwoI	GCNNNNNNNGC	4 cut(s)	131, 152, 185, 512
NdeII	GATC	4 cut(s)	71, 253, 393, 411
NmuCI	GTSAC	2 cut(s)	217, 403
NruI	TCGCGA	2 cut(s)	188, 278
NspV	TTCGAA	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 378
PfeI	GAWTC	6 cut(s)	105, 280, 388, 598, 611, 688
PkrI	GCNGC	3 cut(s)	127, 154, 498
PleI	GAGTC	1 cut(s)	585
PpsI	GAGTC	1 cut(s)	585
PsuI	RGATCY	2 cut(s)	71, 253
RruI	TCGCGA	2 cut(s)	188, 278
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	380
SaqAI	TTAA	4 cut(s)	212, 417, 533, 558
SatI	GCNGC	3 cut(s)	126, 153, 497
Sau3AI	GATC	4 cut(s)	71, 253, 393, 411
ScaI	AGTACT	1 cut(s)	264
SchI	GAGTC	1 cut(s)	586
SfaNI	GCATC	2 cut(s)	164, 562
SfuI	TTCGAA	1 cut(s)	620
SgrDI	CGTCGACG	1 cut(s)	380
Sse9I	AATT	5 cut(s)	209, 458, 485, 500, 692
SsiI	CCGC	4 cut(s)	126, 150, 464, 497
TaaI	ACNGT	4 cut(s)	116, 217, 295, 565
TaiI	ACGT	3 cut(s)	186, 310, 375
TaqI	TCGA	6 cut(s)	228, 237, 297, 318, 381, 620
TasI	AATT	5 cut(s)	209, 458, 485, 500, 692
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	2 cut(s)	128, 499
TfiI	GAWTC	6 cut(s)	105, 280, 388, 598, 611, 688
Tru1I	TTAA	4 cut(s)	212, 417, 533, 558
Tru9I	TTAA	4 cut(s)	212, 417, 533, 558
TseFI	GTSAC	2 cut(s)	217, 403
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	2 cut(s)	217, 403
TspGWI	ACGGA	2 cut(s)	422, 464
XmiI	GTMKAC	1 cut(s)	381
ZraI	GACGTC	1 cut(s)	184
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.