Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Forward (+)

9544037 .. 9544777

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0071700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCTGAATGGCAATACCAACTATCACGTGGTAGTCCGGAACCACATAATAATTTCTCAGCTAGAGGTACAAGTCAAGAAATGAAGAGAGCGTACGAAATCCCAAACCACGGGCTGACACAAATGAAGACCTTACTCTTTCTCCTCCTACTCTGCTCCCTTTCGCTCACACTCCCCACTTTCTCCGACGCAACCTCAGCCTATCCTTCCTTTCCCGGTACCGCTCCAGCCGACTGTTCTTTCTCCGACGGCCATGACACTGCCCCTCTGATTCCCCCTCGCCGTGAAGTGTATGGAAATGGCCGAATCTTCGACGTAACCCACCTGATCACCACGGCCACGCCATCGTATGGCTCCCCGGACGGCGTGCTGGGTCAGTTCCTGTGGTTCCCCCACAAAAGGAAGAACGGCTCCATCGCTTCAGTTTTCAAGCTGCCTTCTCACACCGGCACACATGTTGATTCCCCTGGACACTACTTCCATCACTACCTCGATGCTGGCTTCGATGTCGATACGCTTGACTTGGAGGTCCTTAATGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

181

Amino Acids

19.97

Weight (kDa)

6.01

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclase	PF04199	105 - 177	4.8e-06	Putative cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	37
AciI	CCGC	1 cut(s)	222
AcoI	YGGCCR	3 cut(s)	250, 301, 336
AcuI	CTGAAG	1 cut(s)	405
AcvI	CACGTG	1 cut(s)	29
AfaI	GTAC	3 cut(s)	70, 95, 220
AfiI	CCNNNNNNNGG	3 cut(s)	110, 350, 399
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	2 cut(s)	62, 433
AluI	AGCT	2 cut(s)	62, 433
AlwNI	CAGNNNCTG	1 cut(s)	382
Aor13HI	TCCGGA	1 cut(s)	37
AoxI	GGCC	3 cut(s)	250, 301, 336
ApeKI	GCWGC	1 cut(s)	433
Asp718I	GGTACC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	2 cut(s)	216, 359
AsuHPI	GGTGA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	218
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
BbrPI	CACGTG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	3 cut(s)	352, 422, 489
BceAI	ACGGC	5 cut(s)	265, 267, 351, 379, 424
BciT130I	CCWGG	1 cut(s)	468
BclI	TGATCA	1 cut(s)	327
BcnI	CCSGG	2 cut(s)	216, 359
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
Bme1390I	CCNGG	3 cut(s)	216, 359, 468
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	5 cut(s)	42, 220, 355, 389, 412
BmrFI	CCNGG	3 cut(s)	216, 359, 468
BmsI	GCATC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	196
BpuMI	CCSGG	2 cut(s)	216, 359
BsaAI	YACGTR	1 cut(s)	29
BsaJI	CCNNGG	4 cut(s)	109, 333, 357, 466
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 350, 399
Bse118I	RCCGGY	1 cut(s)	446
BseAI	TCCGGA	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	4 cut(s)	109, 333, 357, 466
BseLI	CCNNNNNNNGG	3 cut(s)	110, 350, 399
BseMII	CTCAG	2 cut(s)	72, 210
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	420
BseYI	CCCAGC	1 cut(s)	370
BshFI	GGCC	3 cut(s)	252, 303, 338
BshNI	GGYRCC	1 cut(s)	218
BsiSI	CCGG	4 cut(s)	38, 216, 359, 447
BsiWI	CGTACG	1 cut(s)	93
BslI	CCNNNNNNNGG	3 cut(s)	110, 350, 399
BsnI	GGCC	3 cut(s)	252, 303, 338
Bsp13I	TCCGGA	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	3 cut(s)	252, 303, 338
BspCNI	CTCAG	2 cut(s)	71, 209
BspEI	TCCGGA	1 cut(s)	37
BspLI	GGNNCC	5 cut(s)	42, 220, 355, 389, 412
BspT107I	GGYRCC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	446
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	4 cut(s)	109, 333, 357, 466
BssMI	GATC	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	80
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	368, 499
BstDEI	CTNAG	2 cut(s)	58, 196
BstDSI	CCRYGG	2 cut(s)	109, 333
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	468
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	3 cut(s)	214, 357, 466
BstV1I	GCAGC	1 cut(s)	420
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	252, 303, 338
BtgI	CCRYGG	2 cut(s)	109, 333
BtgZI	GCGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	368, 499
CaiI	CAGNNNCTG	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	529
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	69, 94, 219
CviAII	CATG	2 cut(s)	254, 455
CviQI	GTAC	3 cut(s)	69, 94, 219
DdeI	CTNAG	2 cut(s)	58, 196
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
EaeI	YGGCCR	3 cut(s)	250, 301, 336
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	405
Eco72I	CACGTG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	466
FaeI	CATG	2 cut(s)	257, 458
FaiI	YATR	5 cut(s)	48, 255, 294, 351, 456
FatI	CATG	2 cut(s)	253, 454
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	434
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	252, 303, 338
HapII	CCGG	4 cut(s)	38, 216, 359, 447
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	257, 458
HinfI	GANTC	3 cut(s)	271, 306, 461
HpaII	CCGG	4 cut(s)	38, 216, 359, 447
HphI	GGTGA	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	7, 187, 247, 270
Hpy188III	TCNNGA	2 cut(s)	38, 77
Hpy99I	CGWCG	3 cut(s)	191, 251, 317
HpyAV	CCTTC	2 cut(s)	216, 447
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	2 cut(s)	28, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	58, 196
HpySE526I	ACGT	2 cut(s)	28, 315
Hsp92II	CATG	2 cut(s)	257, 458
Kpn2I	TCCGGA	1 cut(s)	37
KpnI	GGTACC	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	4 cut(s)	161, 229, 359, 416
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	28, 315
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	329
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	1 cut(s)	327
MboII	GAAGA	4 cut(s)	97, 139, 301, 415
MluCI	AATT	2 cut(s)	52, 541
MmeI	TCCRAC	2 cut(s)	210, 270
MnlI	CCTC	7 cut(s)	59, 155, 205, 276, 288, 500, 520
MroI	TCCGGA	1 cut(s)	37
MseI	TTAA	1 cut(s)	534
MspI	CCGG	4 cut(s)	38, 216, 359, 447
MspR9I	CCNGG	3 cut(s)	216, 359, 468
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	2 cut(s)	216, 359
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	257, 458
NlaIV	GGNNCC	5 cut(s)	42, 220, 355, 389, 412
NspI	RCATGY	1 cut(s)	458
PciI	ACATGT	1 cut(s)	454
PfeI	GAWTC	3 cut(s)	271, 306, 461
Pfl23II	CGTACG	1 cut(s)	93
PflMI	CCANNNNNTGG	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	435
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
Ppu21I	YACGTR	1 cut(s)	29
PpuMI	RGGWCCY	1 cut(s)	529
PscI	ACATGT	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	466
PspCI	CACGTG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	466
PspLI	CGTACG	1 cut(s)	93
PspN4I	GGNNCC	5 cut(s)	42, 220, 355, 389, 412
PspPI	GGNCC	1 cut(s)	529
PspPPI	RGGWCCY	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	70, 95, 220
RsaNI	GTAC	3 cut(s)	69, 94, 219
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	529
ScrFI	CCNGG	3 cut(s)	216, 359, 468
SfaNI	GCATC	1 cut(s)	484
SinI	GGWCC	1 cut(s)	529
Sse9I	AATT	2 cut(s)	52, 541
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	3 cut(s)	214, 357, 466
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	2 cut(s)	31, 318
TaqI	TCGA	4 cut(s)	312, 492, 504, 510
TasI	AATT	2 cut(s)	52, 541
TfiI	GAWTC	3 cut(s)	271, 306, 461
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	98, 140
TspRI	CASTG	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	529
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.