Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Forward (+)

10943631 .. 10944955

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g12490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCCGCCCTCCAACAAACCCCAATCTGTCTCCAATCCAAAACCCCACCGCCACCGCTCTCCTCCTCCCTCACCGCCAGATCCACCGCCGTCTCCTTCTCCTCCACATTCACCCCCCTCAACCTCAAGCTCACCGCCGCCGCATCCTCCTCCACCTCCCTCCGCCGCGGAGGTGGCGGCGCACGCATGAACGCCACCGCCGCCTCCAGCTACGCCGCGGCCCTGGCCGACGTGGCGGTCTCCAACAACACCCTGGAGACCACCGTGGCCGACGTGGAGAAGCTCGAGAAGTTCTTCGGGGAGCCGTCGGTGTTCGACTTCTTCGTCAACCCCACCATCAGCCTGGAGAAGAAGCGCGGCGTCCTCGACGACATCGCCAAGTCGGCGGCGCTGCAGCCCCACACGGTCAACTTCCTCAACATTTTGGTCGACGCCAAGAGAATCGACCTCATCAAGGACATTGTGGCAGAGTTTGAGACTGTATACAACAAGATTACGGATACGGAGCTGGCCATAGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCGCAGATAGCCAAGCAGGTGCAGAAGCTCACGGGCTCCAAGAATGTGAGGATCAAGTCGGAGATTGATCCCAGTTTGGTGGCCGGGTTCACTGTGAGGTACGGCAATTCTGGGTCTAAGCTGATTGATATGAGTGTCAAGAAGCAGCTTGAGGAGATTGCTGCTCAGCTCGATTTGGGTGACATCAAGCTCAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

251

Amino Acids

26.73

Weight (kDa)

8.56

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	68 - 241	2e-41	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	751
AarI	CACCTGC	1 cut(s)	559
AasI	GACNNNNNNGTC	2 cut(s)	236, 323
Acc36I	ACCTGC	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	58
AccI	GTMKAC	2 cut(s)	429, 483
AccII	CGCG	3 cut(s)	168, 218, 357
AclWI	GGATC	3 cut(s)	75, 611, 614
AcoI	YGGCCR	5 cut(s)	3, 225, 267, 510, 633
AcyI	GRCGYC	2 cut(s)	360, 432
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	1 cut(s)	454
AjiI	CACGTC	2 cut(s)	232, 274
AjnI	CCWGG	3 cut(s)	222, 252, 342
Alw21I	GWGCWC	1 cut(s)	524
Alw26I	GTCTC	5 cut(s)	35, 97, 244, 251, 470
AlwI	GGATC	3 cut(s)	75, 611, 614
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	6 cut(s)	3, 219, 225, 267, 510, 633
ApeKI	GCWGC	5 cut(s)	391, 394, 544, 697, 713
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	4 cut(s)	182, 357, 391, 556
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	5 cut(s)	64, 103, 124, 541, 743
AvaI	CYCGRG	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	512
BanII	GRGCYC	2 cut(s)	524, 590
Bbv12I	GWGCWC	1 cut(s)	524
BbvI	GCAGC	5 cut(s)	378, 406, 556, 700, 709
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	3 cut(s)	74, 289, 670
BciT130I	CCWGG	3 cut(s)	224, 254, 344
BciVI	GTATCC	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	5 cut(s)	35, 97, 244, 251, 470
BfmI	CTRYAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	493
BglI	GCCNNNNNGGC	2 cut(s)	233, 383
BlpI	GCTNAGC	1 cut(s)	717
Bme1390I	CCNGG	4 cut(s)	224, 254, 344, 637
BmeT110I	CYCGRG	1 cut(s)	284
BmgBI	CACGTC	2 cut(s)	232, 274
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	303, 589
BmrFI	CCNGG	4 cut(s)	224, 254, 344, 637
BmrI	ACTGGG	1 cut(s)	618
BmsI	GCATC	1 cut(s)	152
BmuI	ACTGGG	1 cut(s)	618
BpmI	CTGGAG	4 cut(s)	190, 275, 365, 557
Bpu1102I	GCTNAGC	1 cut(s)	717
BpuEI	CTTGAG	2 cut(s)	110, 722
BpuMI	CCSGG	1 cut(s)	637
BsaHI	GRCGYC	2 cut(s)	360, 432
BsaI	GGTCTC	2 cut(s)	244, 251
BsaJI	CCNNGG	5 cut(s)	166, 216, 222, 252, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	624
BseBI	CCWGG	3 cut(s)	224, 254, 344
BseDI	CCNNGG	5 cut(s)	166, 216, 222, 252, 264
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMII	CTCAG	1 cut(s)	731
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	5 cut(s)	52, 55, 91, 139, 719
BseXI	GCAGC	5 cut(s)	378, 406, 556, 700, 709
BsgI	GTGCAG	1 cut(s)	593
Bsh1236I	CGCG	3 cut(s)	168, 218, 357
BshFI	GGCC	6 cut(s)	5, 221, 227, 269, 512, 635
BsiHKAI	GWGCWC	1 cut(s)	524
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	636
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	5 cut(s)	35, 97, 244, 251, 470
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	6 cut(s)	5, 221, 227, 269, 512, 635
Bso31I	GGTCTC	2 cut(s)	244, 251
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	524, 590
Bsp143I	GATC	3 cut(s)	80, 603, 619
Bsp1720I	GCTNAGC	1 cut(s)	717
BspANI	GGCC	6 cut(s)	5, 221, 227, 269, 512, 635
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	3 cut(s)	168, 218, 357
BspLI	GGNNCC	2 cut(s)	303, 589
BspMAI	CTGCAG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	3 cut(s)	75, 611, 614
BspTNI	GGTCTC	2 cut(s)	244, 251
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	5 cut(s)	166, 216, 222, 252, 264
BssMI	GATC	3 cut(s)	80, 603, 619
BssNAI	GTATAC	1 cut(s)	484
BssNI	GRCGYC	2 cut(s)	360, 432
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	3 cut(s)	224, 254, 344
Bst4CI	ACNGT	4 cut(s)	265, 406, 481, 646
BstACI	GRCGYC	2 cut(s)	360, 432
BstC8I	GCNNGC	2 cut(s)	184, 510
BstDEI	CTNAG	2 cut(s)	669, 717
BstDSI	CCRYGG	3 cut(s)	166, 216, 264
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	143
BstFNI	CGCG	3 cut(s)	168, 218, 357
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	4 cut(s)	182, 357, 391, 556
BstKTI	GATC	3 cut(s)	83, 606, 622
BstMAI	GTCTC	5 cut(s)	35, 97, 244, 251, 470
BstMBI	GATC	3 cut(s)	80, 603, 619
BstMWI	GCNNNNNNNGC	9 cut(s)	174, 183, 200, 224, 233, 383, 541, 553, 560
BstNI	CCWGG	3 cut(s)	224, 254, 344
BstSCI	CCNGG	4 cut(s)	222, 252, 342, 635
BstSFI	CTRYAG	1 cut(s)	392
BstUI	CGCG	3 cut(s)	168, 218, 357
BstV1I	GCAGC	5 cut(s)	378, 406, 556, 700, 709
BstX2I	RGATCY	1 cut(s)	80
BstXI	CCANNNNNNTGG	2 cut(s)	343, 631
BstYI	RGATCY	1 cut(s)	80
BstZ17I	GTATAC	1 cut(s)	484
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	6 cut(s)	5, 221, 227, 269, 512, 635
BtgI	CCRYGG	3 cut(s)	166, 216, 264
BtgZI	GCGATG	1 cut(s)	358
BtrI	CACGTC	2 cut(s)	232, 274
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	642
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	184, 510
CfoI	GCGC	4 cut(s)	182, 357, 391, 556
Cfr13I	GGNCC	1 cut(s)	220
Cfr42I	CCGCGG	2 cut(s)	169, 219
CseI	GACGC	2 cut(s)	349, 440
Csp6I	GTAC	1 cut(s)	652
CviAII	CATG	1 cut(s)	187
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	2 cut(s)	669, 717
DpnI	GATC	3 cut(s)	82, 605, 621
DpnII	GATC	3 cut(s)	80, 603, 619
DrdI	GACNNNNNNGTC	2 cut(s)	236, 323
DseDI	GACNNNNNNGTC	2 cut(s)	236, 323
EaeI	YGGCCR	5 cut(s)	3, 225, 267, 510, 633
EciI	GGCGGA	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	524, 590
Eco31I	GGTCTC	2 cut(s)	244, 251
Eco53kI	GAGCTC	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	522
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	3 cut(s)	222, 252, 342
EcoT38I	GRGCYC	2 cut(s)	524, 590
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	190
FaiI	YATR	5 cut(s)	188, 484, 515, 683, 751
FatI	CATG	1 cut(s)	186
FblI	GTMKAC	2 cut(s)	429, 483
FokI	GGATG	1 cut(s)	130
FriOI	GRGCYC	2 cut(s)	524, 590
GlaI	GCGC	4 cut(s)	181, 356, 390, 555
GsuI	CTGGAG	4 cut(s)	190, 275, 365, 557
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	6 cut(s)	5, 221, 227, 269, 512, 635
HapII	CCGG	1 cut(s)	636
HgaI	GACGC	2 cut(s)	349, 440
HhaI	GCGC	4 cut(s)	182, 357, 391, 556
Hin1I	GRCGYC	2 cut(s)	360, 432
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	4 cut(s)	180, 355, 389, 554
HinP1I	GCGC	4 cut(s)	180, 355, 389, 554
HincII	GTYRAC	3 cut(s)	328, 409, 430
HindII	GTYRAC	3 cut(s)	328, 409, 430
HinfI	GANTC	2 cut(s)	441, 539
HpaII	CCGG	1 cut(s)	636
HphI	GGTGA	5 cut(s)	64, 103, 124, 541, 743
Hpy166II	GTNNAC	5 cut(s)	328, 409, 430, 484, 642
Hpy188I	TCNGA	1 cut(s)	613
Hpy188III	TCNNGA	2 cut(s)	286, 691
Hpy8I	GTNNAC	5 cut(s)	328, 409, 430, 484, 642
Hpy99I	CGWCG	5 cut(s)	233, 275, 310, 371, 434
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	4 cut(s)	265, 406, 481, 646
HpyCH4IV	ACGT	2 cut(s)	231, 273
HpyCH4V	TGCA	2 cut(s)	394, 574
HpyF10VI	GCNNNNNNNGC	9 cut(s)	174, 183, 200, 224, 233, 383, 541, 553, 560
HpyF3I	CTNAG	2 cut(s)	669, 717
HpySE526I	ACGT	2 cut(s)	231, 273
Hsp92I	GRCGYC	2 cut(s)	360, 432
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	4 cut(s)	180, 355, 389, 554
KspI	CCGCGG	2 cut(s)	169, 219
Kzo9I	GATC	3 cut(s)	80, 603, 619
LmnI	GCTCC	3 cut(s)	301, 505, 593
Lsp1109I	GCAGC	5 cut(s)	378, 406, 556, 700, 709
LweI	GCATC	1 cut(s)	152
MaeII	ACGT	2 cut(s)	231, 273
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	3 cut(s)	82, 605, 621
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	3 cut(s)	80, 603, 619
MboII	GAAGA	3 cut(s)	286, 313, 361
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	524, 590
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	2 cut(s)	658, 745
MluNI	TGGCCA	1 cut(s)	512
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	3 cut(s)	37, 267, 591
Mox20I	TGGCCA	1 cut(s)	512
MroXI	GAANNNNTTC	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	512
MspA1I	CMGCKG	2 cut(s)	168, 218
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	4 cut(s)	224, 254, 344, 637
MvaI	CCWGG	3 cut(s)	224, 254, 344
MvnI	CGCG	3 cut(s)	168, 218, 357
MwoI	GCNNNNNNNGC	9 cut(s)	174, 183, 200, 224, 233, 383, 541, 553, 560
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	3 cut(s)	80, 603, 619
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	303, 589
NmuCI	GTSAC	1 cut(s)	731
PaeR7I	CTCGAG	1 cut(s)	284
PaqCI	CACCTGC	1 cut(s)	559
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	441
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PsiI	TTATAA	1 cut(s)	751
Psp124BI	GAGCTC	1 cut(s)	524
Psp6I	CCWGG	3 cut(s)	222, 252, 342
PspGI	CCWGG	3 cut(s)	222, 252, 342
PspN4I	GGNNCC	2 cut(s)	303, 589
PspPI	GGNCC	1 cut(s)	220
PstI	CTGCAG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
SacI	GAGCTC	1 cut(s)	524
SacII	CCGCGG	2 cut(s)	169, 219
SalI	GTCGAC	1 cut(s)	428
Sau3AI	GATC	3 cut(s)	80, 603, 619
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	4 cut(s)	224, 254, 344, 637
SduI	GDGCHC	2 cut(s)	524, 590
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	392
Sfr274I	CTCGAG	1 cut(s)	284
Sfr303I	CCGCGG	2 cut(s)	169, 219
SgrBI	CCGCGG	2 cut(s)	169, 219
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	3 cut(s)	125, 284, 701
SmoI	CTYRAG	3 cut(s)	125, 284, 701
Sse9I	AATT	2 cut(s)	658, 745
SstI	GAGCTC	1 cut(s)	524
StyD4I	CCNGG	4 cut(s)	222, 252, 342, 635
TaaI	ACNGT	4 cut(s)	265, 406, 481, 646
TaiI	ACGT	2 cut(s)	234, 276
TaqI	TCGA	6 cut(s)	285, 315, 366, 429, 444, 723
TasI	AATT	2 cut(s)	658, 745
TfiI	GAWTC	1 cut(s)	441
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	5 cut(s)	391, 394, 544, 697, 713
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	2 cut(s)	512, 518
TspRI	CASTG	1 cut(s)	649
XagI	CCTNNNNNAGG	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	2 cut(s)	250, 340
XhoI	CTCGAG	1 cut(s)	284
XmiI	GTMKAC	2 cut(s)	429, 483
XmnI	GAANNNNTTC	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.