Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Forward (+)

33197691 .. 33198847

Gene Structure 1157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG187400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCACTCTCCAACAAACCCCAATCTCTCTCCAATCCAAAACCCCACCGCCACCGCTCTCCTCCGCCCTCACCGCCAGATCCACCGCCGTCTCCTTCTCCTCCACATTCACCCCCCTCAACCTCAAACTCACCGCCGCAGCAGCATCCACCTCCGTCCGCCGCGGAGGCGGCGCTTGCGGCGCCCGGATGAACGCCACCGCCGCCGCAAGCTACGCGGCGGCTCTGGCGGACGTGGCGATATCCAACAACACCCTGGACGTCACCGTCGCCGACGTGGAGAAGATCGATGAGTTCTTCGCGGAGCCGTCGGTGTTCGACTTCTTCACCAACCCCACAGTCGGCCTGGAGAAGAAGCGCGGCGTCCTCGACGAAATCGCCAAGTCGTCGGCGCTGCAGCCCCACACGGTGAACTTCCTCAACATTTTGGTTGAAGCCAAGAGAATCGACGTCATCAAGGACATTGTCAAGGAGTTTGAGATCGTTTACAACAAGCTTACGGATACGGAGCTGGCCATAGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCGCAGATAGCCAAGCAGGTGCAGAAGCTCACTGGCGCCAAGAATGTCAGGATCAAGTCGGAGATTGATCCCAGTTTGGTTGCGGGGTTCACTGTGAGATATGGCAATTCTGGGTCTAAGCTGATTGATATGAGTGTCAAGAAGCAGCTTGAGGAGATTGCTGCTCAGCTCGATTTGGGTGACATCAAGCTCAATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

251

Amino Acids

26.81

Weight (kDa)

7.77

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	69 - 242	1.2e-39	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	2 cut(s)	264, 453
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	2 cut(s)	182, 590
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	4 cut(s)	165, 218, 302, 360
AclWI	GGATC	3 cut(s)	75, 614, 617
AcoI	YGGCCR	2 cut(s)	3, 513
AcyI	GRCGYC	5 cut(s)	183, 261, 363, 450, 591
AdeI	CACNNNGTG	1 cut(s)	409
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	434
AjiI	CACGTC	2 cut(s)	235, 277
AjnI	CCWGG	2 cut(s)	255, 345
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	3 cut(s)	75, 614, 617
AoxI	GGCC	3 cut(s)	3, 343, 513
ApeKI	GCWGC	7 cut(s)	140, 143, 394, 397, 547, 700, 716
AspLEI	GCGC	6 cut(s)	176, 185, 360, 394, 559, 593
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	8 cut(s)	64, 103, 124, 256, 319, 421, 544, 746
BalI	TGGCCA	2 cut(s)	5, 515
BanI	GGYRCC	2 cut(s)	182, 590
BanII	GRGCYC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	7 cut(s)	152, 155, 381, 409, 559, 703, 712
BceAI	ACGGC	2 cut(s)	74, 292
BciT130I	CCWGG	2 cut(s)	257, 347
BciVI	GTATCC	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	97
BfmI	CTRYAG	2 cut(s)	395, 752
BfoI	RGCGCY	4 cut(s)	177, 186, 395, 594
BfuAI	ACCTGC	1 cut(s)	562
BfuI	GTATCC	1 cut(s)	496
BglI	GCCNNNNNGGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	720
Bme1390I	CCNGG	3 cut(s)	187, 257, 347
BmgBI	CACGTC	2 cut(s)	235, 277
BmiI	GGNNCC	3 cut(s)	184, 306, 592
BmrFI	CCNGG	3 cut(s)	187, 257, 347
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	621
BpmI	CTGGAG	2 cut(s)	368, 560
Bpu1102I	GCTNAGC	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	725
BpuMI	CCSGG	1 cut(s)	187
Bsa29I	ATCGAT	1 cut(s)	288
BsaHI	GRCGYC	5 cut(s)	183, 261, 363, 450, 591
BsaJI	CCNNGG	2 cut(s)	163, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	592, 627
BseBI	CCWGG	2 cut(s)	257, 347
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	163, 255
BseGI	GGATG	2 cut(s)	146, 195
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	2 cut(s)	592, 627
BseRI	GAGGAG	3 cut(s)	52, 91, 722
BseXI	GCAGC	7 cut(s)	152, 155, 381, 409, 559, 703, 712
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	4 cut(s)	165, 218, 302, 360
BshFI	GGCC	3 cut(s)	5, 345, 515
BshNI	GGYRCC	2 cut(s)	182, 590
BshVI	ATCGAT	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	527
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	97
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	3 cut(s)	5, 345, 515
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	5 cut(s)	80, 285, 480, 606, 622
Bsp1720I	GCTNAGC	1 cut(s)	720
BspANI	GGCC	3 cut(s)	5, 345, 515
BspCNI	CTCAG	1 cut(s)	733
BspDI	ATCGAT	1 cut(s)	288
BspFNI	CGCG	4 cut(s)	165, 218, 302, 360
BspLI	GGNNCC	3 cut(s)	184, 306, 592
BspMAI	CTGCAG	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	3 cut(s)	75, 614, 617
BspT107I	GGYRCC	2 cut(s)	182, 590
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	592, 627
BssECI	CCNNGG	2 cut(s)	163, 255
BssMI	GATC	5 cut(s)	80, 285, 480, 606, 622
BssNI	GRCGYC	5 cut(s)	183, 261, 363, 450, 591
Bst2UI	CCWGG	2 cut(s)	257, 347
Bst4CI	ACNGT	4 cut(s)	268, 340, 409, 649
BstACI	GRCGYC	5 cut(s)	183, 261, 363, 450, 591
BstC8I	GCNNGC	3 cut(s)	178, 211, 513
BstDEI	CTNAG	2 cut(s)	672, 720
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	146, 195
BstFNI	CGCG	4 cut(s)	165, 218, 302, 360
BstH2I	RGCGCY	4 cut(s)	177, 186, 395, 594
BstHHI	GCGC	6 cut(s)	176, 185, 360, 394, 559, 593
BstKTI	GATC	5 cut(s)	83, 288, 483, 609, 625
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	5 cut(s)	80, 285, 480, 606, 622
BstNI	CCWGG	2 cut(s)	257, 347
BstSCI	CCNGG	3 cut(s)	185, 255, 345
BstSFI	CTRYAG	2 cut(s)	395, 752
BstUI	CGCG	4 cut(s)	165, 218, 302, 360
BstV1I	GCAGC	7 cut(s)	152, 155, 381, 409, 559, 703, 712
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
Bsu15I	ATCGAT	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	3 cut(s)	5, 345, 515
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	163
BtrI	CACGTC	2 cut(s)	235, 277
BtsCI	GGATG	2 cut(s)	146, 195
BtsIMutI	CAGTG	2 cut(s)	585, 645
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	3 cut(s)	178, 211, 513
CfoI	GCGC	6 cut(s)	176, 185, 360, 394, 559, 593
Cfr42I	CCGCGG	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	672, 720
DinI	GGCGCC	2 cut(s)	184, 592
DpnI	GATC	5 cut(s)	82, 287, 482, 608, 624
DpnII	GATC	5 cut(s)	80, 285, 480, 606, 622
DraIII	CACNNNGTG	1 cut(s)	409
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	2 cut(s)	3, 513
EciI	GGCGGA	3 cut(s)	55, 149, 245
Ecl136II	GAGCTC	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	527
Eco32I	GATATC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	525
EcoICRI	GAGCTC	1 cut(s)	525
EcoRII	CCWGG	2 cut(s)	255, 345
EcoRV	GATATC	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	527
EgeI	GGCGCC	2 cut(s)	184, 592
EheI	GGCGCC	2 cut(s)	184, 592
Esp3I	CGTCTC	1 cut(s)	97
FaiI	YATR	4 cut(s)	518, 657, 686, 754
FauI	CCCGC	1 cut(s)	631
FokI	GGATG	2 cut(s)	133, 202
FriOI	GRGCYC	1 cut(s)	527
GlaI	GCGC	6 cut(s)	175, 184, 359, 393, 558, 592
GsuI	CTGGAG	2 cut(s)	368, 560
HaeII	RGCGCY	4 cut(s)	177, 186, 395, 594
HaeIII	GGCC	3 cut(s)	5, 345, 515
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	6 cut(s)	176, 185, 360, 394, 559, 593
Hin1I	GRCGYC	5 cut(s)	183, 261, 363, 450, 591
Hin6I	GCGC	6 cut(s)	174, 183, 358, 392, 557, 591
HinP1I	GCGC	6 cut(s)	174, 183, 358, 392, 557, 591
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	2 cut(s)	444, 542
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	8 cut(s)	64, 103, 124, 256, 319, 421, 544, 746
Hpy166II	GTNNAC	3 cut(s)	412, 487, 645
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	2 cut(s)	604, 694
Hpy8I	GTNNAC	3 cut(s)	412, 487, 645
Hpy99I	CGWCG	6 cut(s)	272, 278, 313, 374, 391, 452
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	4 cut(s)	268, 340, 409, 649
HpyCH4IV	ACGT	4 cut(s)	234, 261, 276, 450
HpyCH4V	TGCA	2 cut(s)	397, 577
HpyF3I	CTNAG	2 cut(s)	672, 720
HpySE526I	ACGT	4 cut(s)	234, 261, 276, 450
Hsp92I	GRCGYC	5 cut(s)	183, 261, 363, 450, 591
HspAI	GCGC	6 cut(s)	174, 183, 358, 392, 557, 591
KasI	GGCGCC	2 cut(s)	182, 590
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	80, 285, 480, 606, 622
LmnI	GCTCC	2 cut(s)	304, 508
Lsp1109I	GCAGC	7 cut(s)	152, 155, 381, 409, 559, 703, 712
LweI	GCATC	1 cut(s)	155
MaeII	ACGT	4 cut(s)	234, 261, 276, 450
MaeIII	GTNAC	2 cut(s)	262, 734
MalI	GATC	5 cut(s)	82, 287, 482, 608, 624
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	5 cut(s)	80, 285, 480, 606, 622
MboII	GAAGA	4 cut(s)	289, 295, 316, 364
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	527
MlsI	TGGCCA	2 cut(s)	5, 515
MluCI	AATT	1 cut(s)	661
MluNI	TGGCCA	2 cut(s)	5, 515
Mly113I	GGCGCC	2 cut(s)	183, 591
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	3 cut(s)	37, 270, 594
Mox20I	TGGCCA	2 cut(s)	5, 515
MscI	TGGCCA	2 cut(s)	5, 515
Msp20I	TGGCCA	2 cut(s)	5, 515
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	3 cut(s)	187, 257, 347
MvaI	CCWGG	2 cut(s)	257, 347
MvnI	CGCG	4 cut(s)	165, 218, 302, 360
NarI	GGCGCC	2 cut(s)	183, 591
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	5 cut(s)	80, 285, 480, 606, 622
NlaIV	GGNNCC	3 cut(s)	184, 306, 592
NmuCI	GTSAC	2 cut(s)	262, 734
PaqCI	CACCTGC	1 cut(s)	562
PfeI	GAWTC	1 cut(s)	444
PflFI	GACNNNGTC	1 cut(s)	464
PleI	GAGTC	1 cut(s)	550
PluTI	GGCGCC	2 cut(s)	186, 594
PpsI	GAGTC	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	527
Psp6I	CCWGG	2 cut(s)	255, 345
PspGI	CCWGG	2 cut(s)	255, 345
PspN4I	GGNNCC	3 cut(s)	184, 306, 592
PstI	CTGCAG	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	464
SacI	GAGCTC	1 cut(s)	527
SacII	CCGCGG	1 cut(s)	166
Sau3AI	GATC	5 cut(s)	80, 285, 480, 606, 622
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	3 cut(s)	187, 257, 347
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	1 cut(s)	155
SfcI	CTRYAG	2 cut(s)	395, 752
SfoI	GGCGCC	2 cut(s)	184, 592
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	1 cut(s)	661
SspDI	GGCGCC	2 cut(s)	182, 590
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	3 cut(s)	185, 255, 345
TaaI	ACNGT	4 cut(s)	268, 340, 409, 649
TaiI	ACGT	4 cut(s)	237, 264, 279, 453
TaqI	TCGA	5 cut(s)	288, 318, 369, 447, 726
TasI	AATT	1 cut(s)	661
TauI	GCSGC	9 cut(s)	140, 165, 174, 183, 206, 209, 221, 224, 363
TfiI	GAWTC	1 cut(s)	444
TscAI	CASTG	2 cut(s)	592, 652
TseFI	GTSAC	2 cut(s)	262, 734
TseI	GCWGC	7 cut(s)	140, 143, 394, 397, 547, 700, 716
Tsp45I	GTSAC	2 cut(s)	262, 734
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	3 cut(s)	145, 515, 521
TspRI	CASTG	2 cut(s)	592, 652
Tth111I	GACNNNGTC	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	2 cut(s)	253, 343
ZraI	GACGTC	2 cut(s)	262, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.