Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Reverse (-)

35148003 .. 35149899

Gene Structure 1897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCAGCTAGCCCACTCAACTCAACCCTCACTGCCTCAACCATCTCCGATTTCAACCCTCCTCCGATTACTCCAGCCTCGTCGACGCCAGCAGCCCCGCCGTCTCCAAGTTTAAAGTCAGCGATGCTGTTTGCTCTGTCAGTGCCCTCGGGTCTTTTGCTCAATTCATCGTCGCCGAATAATCCAAACGGAGAAAAAAGAGAGAAGAGCCAACAATTCCTCTTCTTTTCAATTCGGCAAATCATTGAAGCAATGGCCACCCTCCAACAAACCCCAATCTCTCTCCAATCCAAAACCCCACCGCCGCCTCTCTCCTCCGCCCTCACCGCCAGATCCACCGCCGTCTCCTTCTCCTCCACATTCACCCCCCTCAACCTCAAGCTCACCGCCGCCGCAGCAGCAGCATCCACCTCCGTCCGCCGCGGAGGAGGCGGCGGCGCTTGCGGCGCGCGCATGAACGCCACCGCCGCCGCAAGCTACGCGGCGGCTCTGGCCGACGTGGCGATATCCAACAACACCCTGGACGCCACCGTCGCCGACGTGGAGAAGATCGAGAAGTTCTTCGCGGAGCCGTCGGTGTTCGACTTCTTCACCAACCCGACAGTCGACCTGGAGAAGAAGCGCGGCGTCCTCGACGAAATCGCCAAGTCGTCGGCGCTGCAGCCCCACACGGTGAACTTCCTCAACATTTTGGTTGAAGCCAAGAGAATCGACGTCATCAAGGACATTGTCAAGGAGTTTGAGATCGTTTACAACAAGCTTACGGATACGGAGCTGGCCATAGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCGCAGATAGCCAAGCAGGTGCAGAAGCTCACTGGCGCCAAGAATGTCAGGATCAAGTCGGAGATTGATCCCAGTTTGGTTGCGGGGTTCACTGTGAGATATGGCAATTCCGGGTCTAAGCTGATTGATATGAGTGTCAAGAAGCAGCTTGAGGAGATTGCTGCTCAGCTCGATTTGGGTGACATCAAGCTCAATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

340

Amino Acids

35.87

Weight (kDa)

8.82

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	157 - 330	3.3e-40	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	826
AasI	GACNNNNNNGTC	1 cut(s)	530
AatII	GACGTC	1 cut(s)	717
Acc36I	ACCTGC	1 cut(s)	826
AccB1I	GGYRCC	1 cut(s)	854
AccI	GTMKAC	2 cut(s)	83, 606
AccII	CGCG	6 cut(s)	423, 449, 451, 482, 566, 624
AclWI	GGATC	3 cut(s)	327, 878, 881
AcoI	YGGCCR	3 cut(s)	255, 492, 777
AcyI	GRCGYC	5 cut(s)	86, 525, 627, 714, 855
AdeI	CACNNNGTG	1 cut(s)	673
AgsI	TTSAA	4 cut(s)	55, 231, 248, 698
AjiI	CACGTC	2 cut(s)	499, 541
AjnI	CCWGG	2 cut(s)	519, 609
Alw21I	GWGCWC	1 cut(s)	791
Alw26I	GTCTC	2 cut(s)	108, 349
AlwI	GGATC	3 cut(s)	327, 878, 881
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	3 cut(s)	255, 492, 777
Asp700I	GAANNNNTTC	1 cut(s)	560
AspLEI	GCGC	8 cut(s)	440, 449, 451, 453, 624, 658, 823, 857
AsuC2I	CCSGG	1 cut(s)	931
AsuHPI	GGTGA	7 cut(s)	316, 355, 376, 583, 685, 808, 1010
AsuNHI	GCTAGC	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	147
BalI	TGGCCA	2 cut(s)	257, 779
BanI	GGYRCC	1 cut(s)	854
BanII	GRGCYC	1 cut(s)	791
Bbv12I	GWGCWC	1 cut(s)	791
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	3 cut(s)	85, 326, 556
BciT130I	CCWGG	2 cut(s)	521, 611
BciVI	GTATCC	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	931
BcoDI	GTCTC	2 cut(s)	108, 349
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	659
BfoI	RGCGCY	3 cut(s)	441, 659, 858
BfuAI	ACCTGC	1 cut(s)	826
BfuI	GTATCC	1 cut(s)	760
BglI	GCCNNNNNGGC	1 cut(s)	500
BlpI	GCTNAGC	1 cut(s)	984
Bme1390I	CCNGG	3 cut(s)	521, 611, 931
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	2 cut(s)	499, 541
BmiI	GGNNCC	2 cut(s)	570, 856
BmrFI	CCNGG	3 cut(s)	521, 611, 931
BmrI	ACTGGG	1 cut(s)	885
BmsI	GCATC	2 cut(s)	114, 413
BmtI	GCTAGC	1 cut(s)	12
BmuI	ACTGGG	1 cut(s)	885
BpmI	CTGGAG	3 cut(s)	57, 632, 824
Bpu1102I	GCTNAGC	1 cut(s)	984
BpuEI	CTTGAG	2 cut(s)	362, 989
BpuMI	CCSGG	1 cut(s)	931
BsaHI	GRCGYC	5 cut(s)	86, 525, 627, 714, 855
BsaJI	CCNNGG	3 cut(s)	147, 421, 519
Bse1I	ACTGG	2 cut(s)	856, 891
Bse3DI	GCAATG	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	521, 611
BseDI	CCNNGG	3 cut(s)	147, 421, 519
BseGI	GGATG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	998
BseNI	ACTGG	2 cut(s)	856, 891
BsePI	GCGCGC	2 cut(s)	447, 449
BseRI	GAGGAG	5 cut(s)	51, 304, 343, 441, 986
BseSI	GKGCMC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	860
Bsh1236I	CGCG	6 cut(s)	423, 449, 451, 482, 566, 624
BshFI	GGCC	3 cut(s)	257, 494, 779
BshNI	GGYRCC	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	791
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	930
BsmAI	GTCTC	2 cut(s)	108, 349
BsmBI	CGTCTC	2 cut(s)	108, 349
BsnI	GGCC	3 cut(s)	257, 494, 779
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	147, 791
Bsp143I	GATC	5 cut(s)	332, 549, 744, 870, 886
Bsp1720I	GCTNAGC	1 cut(s)	984
BspANI	GGCC	3 cut(s)	257, 494, 779
BspCNI	CTCAG	1 cut(s)	997
BspFNI	CGCG	6 cut(s)	423, 449, 451, 482, 566, 624
BspLI	GGNNCC	2 cut(s)	570, 856
BspMAI	CTGCAG	1 cut(s)	663
BspMI	ACCTGC	1 cut(s)	826
BspOI	GCTAGC	1 cut(s)	12
BspPI	GGATC	3 cut(s)	327, 878, 881
BspQI	GCTCTTC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	854
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	856, 891
BssECI	CCNNGG	3 cut(s)	147, 421, 519
BssHII	GCGCGC	2 cut(s)	447, 449
BssMI	GATC	5 cut(s)	332, 549, 744, 870, 886
BssNI	GRCGYC	5 cut(s)	86, 525, 627, 714, 855
Bst2UI	CCWGG	2 cut(s)	521, 611
Bst4CI	ACNGT	4 cut(s)	532, 604, 673, 913
Bst6I	CTCTTC	2 cut(s)	200, 227
BstACI	GRCGYC	5 cut(s)	86, 525, 627, 714, 855
BstC8I	GCNNGC	7 cut(s)	10, 90, 442, 449, 451, 475, 777
BstDEI	CTNAG	2 cut(s)	936, 984
BstDSI	CCRYGG	1 cut(s)	421
BstF5I	GGATG	1 cut(s)	404
BstFNI	CGCG	6 cut(s)	423, 449, 451, 482, 566, 624
BstH2I	RGCGCY	3 cut(s)	441, 659, 858
BstHHI	GCGC	8 cut(s)	440, 449, 451, 453, 624, 658, 823, 857
BstKTI	GATC	5 cut(s)	335, 552, 747, 873, 889
BstMAI	GTCTC	2 cut(s)	108, 349
BstMBI	GATC	5 cut(s)	332, 549, 744, 870, 886
BstNI	CCWGG	2 cut(s)	521, 611
BstSCI	CCNGG	3 cut(s)	519, 609, 929
BstSFI	CTRYAG	1 cut(s)	659
BstSLI	GKGCMC	1 cut(s)	147
BstUI	CGCG	6 cut(s)	423, 449, 451, 482, 566, 624
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	760
BsuRI	GGCC	3 cut(s)	257, 494, 779
BtgI	CCRYGG	1 cut(s)	421
BtgZI	GCGATG	1 cut(s)	137
BtrI	CACGTC	2 cut(s)	499, 541
BtsCI	GGATG	1 cut(s)	404
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	30, 147, 849, 909
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	7 cut(s)	10, 90, 442, 449, 451, 475, 777
CfoI	GCGC	8 cut(s)	440, 449, 451, 453, 624, 658, 823, 857
Cfr42I	CCGCGG	1 cut(s)	424
CseI	GACGC	3 cut(s)	94, 533, 616
CviAII	CATG	1 cut(s)	454
DdeI	CTNAG	2 cut(s)	936, 984
DinI	GGCGCC	1 cut(s)	856
DpnI	GATC	5 cut(s)	334, 551, 746, 872, 888
DpnII	GATC	5 cut(s)	332, 549, 744, 870, 886
DraI	TTTAAA	1 cut(s)	114
DraIII	CACNNNGTG	1 cut(s)	673
DrdI	GACNNNNNNGTC	1 cut(s)	530
DseDI	GACNNNNNNGTC	1 cut(s)	530
EaeI	YGGCCR	3 cut(s)	255, 492, 777
Eam1104I	CTCTTC	2 cut(s)	200, 227
EarI	CTCTTC	2 cut(s)	200, 227
EciI	GGCGGA	2 cut(s)	307, 407
Ecl136II	GAGCTC	1 cut(s)	789
Eco24I	GRGCYC	1 cut(s)	791
Eco32I	GATATC	1 cut(s)	507
Eco53kI	GAGCTC	1 cut(s)	789
Eco88I	CYCGRG	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	789
EcoRII	CCWGG	2 cut(s)	519, 609
EcoRV	GATATC	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	791
EgeI	GGCGCC	1 cut(s)	856
EheI	GGCGCC	1 cut(s)	856
Esp3I	CGTCTC	2 cut(s)	108, 349
FaeI	CATG	1 cut(s)	457
FaiI	YATR	5 cut(s)	455, 782, 921, 950, 1018
FatI	CATG	1 cut(s)	453
FauI	CCCGC	2 cut(s)	105, 895
FblI	GTMKAC	2 cut(s)	83, 606
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	791
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	8 cut(s)	439, 448, 450, 452, 623, 657, 822, 856
GsuI	CTGGAG	3 cut(s)	57, 632, 824
HaeII	RGCGCY	3 cut(s)	441, 659, 858
HaeIII	GGCC	3 cut(s)	257, 494, 779
HapII	CCGG	1 cut(s)	930
HgaI	GACGC	3 cut(s)	94, 533, 616
HhaI	GCGC	8 cut(s)	440, 449, 451, 453, 624, 658, 823, 857
Hin1I	GRCGYC	5 cut(s)	86, 525, 627, 714, 855
Hin1II	CATG	1 cut(s)	457
Hin6I	GCGC	8 cut(s)	438, 447, 449, 451, 622, 656, 821, 855
HinP1I	GCGC	8 cut(s)	438, 447, 449, 451, 622, 656, 821, 855
HincII	GTYRAC	2 cut(s)	84, 607
HindII	GTYRAC	2 cut(s)	84, 607
HindIII	AAGCTT	1 cut(s)	758
HinfI	GANTC	2 cut(s)	708, 806
HpaII	CCGG	1 cut(s)	930
HphI	GGTGA	7 cut(s)	316, 355, 376, 583, 685, 808, 1010
Hpy166II	GTNNAC	5 cut(s)	84, 607, 676, 751, 909
Hpy188I	TCNGA	3 cut(s)	49, 66, 880
Hpy188III	TCNNGA	3 cut(s)	553, 868, 958
Hpy8I	GTNNAC	5 cut(s)	84, 607, 676, 751, 909
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	4 cut(s)	532, 604, 673, 913
HpyCH4IV	ACGT	3 cut(s)	498, 540, 714
HpyCH4V	TGCA	2 cut(s)	661, 841
HpyF3I	CTNAG	2 cut(s)	936, 984
HpySE526I	ACGT	3 cut(s)	498, 540, 714
Hsp92I	GRCGYC	5 cut(s)	86, 525, 627, 714, 855
Hsp92II	CATG	1 cut(s)	457
HspAI	GCGC	8 cut(s)	438, 447, 449, 451, 622, 656, 821, 855
KasI	GGCGCC	1 cut(s)	854
KspI	CCGCGG	1 cut(s)	424
Kzo9I	GATC	5 cut(s)	332, 549, 744, 870, 886
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	2 cut(s)	568, 772
LweI	GCATC	2 cut(s)	114, 413
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	3 cut(s)	498, 540, 714
MaeIII	GTNAC	1 cut(s)	998
MalI	GATC	5 cut(s)	334, 551, 746, 872, 888
MboI	GATC	5 cut(s)	332, 549, 744, 870, 886
MboII	GAAGA	6 cut(s)	214, 217, 553, 559, 580, 628
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	2 cut(s)	147, 791
MlsI	TGGCCA	2 cut(s)	257, 779
MluCI	AATT	4 cut(s)	163, 215, 231, 925
MluNI	TGGCCA	2 cut(s)	257, 779
Mly113I	GGCGCC	1 cut(s)	855
MlyI	GAGTC	1 cut(s)	815
MmeI	TCCRAC	3 cut(s)	289, 534, 858
Mox20I	TGGCCA	2 cut(s)	257, 779
MroXI	GAANNNNTTC	1 cut(s)	560
MscI	TGGCCA	2 cut(s)	257, 779
MseI	TTAA	1 cut(s)	113
Msp20I	TGGCCA	2 cut(s)	257, 779
MspA1I	CMGCKG	1 cut(s)	423
MspI	CCGG	1 cut(s)	930
MspR9I	CCNGG	3 cut(s)	521, 611, 931
MvaI	CCWGG	2 cut(s)	521, 611
MvnI	CGCG	6 cut(s)	423, 449, 451, 482, 566, 624
NarI	GGCGCC	1 cut(s)	855
NciI	CCSGG	1 cut(s)	931
NdeII	GATC	5 cut(s)	332, 549, 744, 870, 886
NheI	GCTAGC	1 cut(s)	8
NlaIII	CATG	1 cut(s)	457
NlaIV	GGNNCC	2 cut(s)	570, 856
NmuCI	GTSAC	1 cut(s)	998
PaqCI	CACCTGC	1 cut(s)	826
PauI	GCGCGC	2 cut(s)	447, 449
PciSI	GCTCTTC	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	1 cut(s)	708
PflFI	GACNNNGTC	1 cut(s)	728
PleI	GAGTC	1 cut(s)	814
PluTI	GGCGCC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	814
Psp124BI	GAGCTC	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	519, 609
PspGI	CCWGG	2 cut(s)	519, 609
PspN4I	GGNNCC	2 cut(s)	570, 856
PstI	CTGCAG	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	332
PsyI	GACNNNGTC	1 cut(s)	728
PteI	GCGCGC	2 cut(s)	447, 449
SacI	GAGCTC	1 cut(s)	791
SacII	CCGCGG	1 cut(s)	424
SalI	GTCGAC	2 cut(s)	82, 605
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	113
Sau3AI	GATC	5 cut(s)	332, 549, 744, 870, 886
SchI	GAGTC	1 cut(s)	815
ScrFI	CCNGG	3 cut(s)	521, 611, 931
SduI	GDGCHC	2 cut(s)	147, 791
SfaNI	GCATC	2 cut(s)	114, 413
SfcI	CTRYAG	1 cut(s)	659
SfoI	GGCGCC	1 cut(s)	856
Sfr303I	CCGCGG	1 cut(s)	424
SgrBI	CCGCGG	1 cut(s)	424
SgrDI	CGTCGACG	1 cut(s)	82
SmlI	CTYRAG	2 cut(s)	377, 968
SmoI	CTYRAG	2 cut(s)	377, 968
Sse9I	AATT	4 cut(s)	163, 215, 231, 925
SspDI	GGCGCC	1 cut(s)	854
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	791
StyD4I	CCNGG	3 cut(s)	519, 609, 929
TaaI	ACNGT	4 cut(s)	532, 604, 673, 913
TaiI	ACGT	3 cut(s)	501, 543, 717
TaqI	TCGA	7 cut(s)	83, 552, 582, 606, 633, 711, 990
TasI	AATT	4 cut(s)	163, 215, 231, 925
TfiI	GAWTC	1 cut(s)	708
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	4 cut(s)	37, 147, 856, 916
TseFI	GTSAC	1 cut(s)	998
Tsp45I	GTSAC	1 cut(s)	998
TspDTI	ATGAA	2 cut(s)	156, 470
TspGWI	ACGGA	4 cut(s)	204, 403, 779, 785
TspRI	CASTG	4 cut(s)	37, 147, 856, 916
Tth111I	GACNNNGTC	1 cut(s)	728
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmiI	GTMKAC	2 cut(s)	83, 606
XmnI	GAANNNNTTC	1 cut(s)	560
XspI	CTAG	1 cut(s)	9
ZraI	GACGTC	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.