Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Reverse (-)

5340996 .. 5342069

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G048900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCCGCCCTCCAACACACCCCAATCTCTCTCCAATCCCAAAACCCATCATCCCCACCACAACTCTCCTCCACCCTCACCCCCAGAACCTCCACCCTCTCCTTCTCCTTCTCCTCCACCTTCACCCCCATCCCCCTCAAGCTCTCCTCCTCCGCCGCCGCCGTCGTCACCCTCCGCCGAAACGGCGGCGGAGCCCTCGGCGCCAGAATGAACTCCTCCGCCGCCGCCAGCTACGCCACGGCGTTGGCCGACGTGGCCAAATCCAACAACACCCTCGAAACCACGGCGGGCGACGTGGAGAAGATCGAGAAGTTCTTCGGCGAGCCGTCGGTCTTCGACTTCTTCATCAACCCCACCATCGACCTCGACAAGAAGCGCAAGGTCCTCGACGAAATCGCCAACTCCTCCACCCTCCAACCCCACACCGTCAATTTCCTCAACATCCTCGTCGACGCCAAGCGAATCGACCTCATAAAGGACATCGTAAAGGAGTTCGAGGTGGTTTACAACAAAATCACGGACACGGAGCTGGCCATCGTGACCTCGGTGGTGAAGCTGGAGTCGCAGCACCTGGCGCAGATAGCGAAGCAGGTGCAGAAGCTGACGGGGGCGAAGAACGTGAGGATCAAGACGGAGATTGATCCAAGCTTGGTGGCCGGGTTCACTGTGAGATATGGCAACTCTGGGTCGAAGCTTATCGATTTGAGCGTGAAGAAGCAGCTTGAGGAGATTGCTGCGGAGCTTGACTTGGGTGATATTAAGCTCAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

258

Amino Acids

27.75

Weight (kDa)

7.86

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	772
AarI	CACCTGC	1 cut(s)	580
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	450
AclWI	GGATC	2 cut(s)	632, 635
AcoI	YGGCCR	5 cut(s)	3, 246, 255, 531, 654
AcyI	GRCGYC	2 cut(s)	201, 453
AfiI	CCNNNNNNNGG	1 cut(s)	475
AjiI	CACGTC	2 cut(s)	253, 295
AjnI	CCWGG	1 cut(s)	570
AlwI	GGATC	2 cut(s)	632, 635
AlwNI	CAGNNNCTG	2 cut(s)	571, 601
AoxI	GGCC	5 cut(s)	3, 246, 255, 531, 654
ApeKI	GCWGC	3 cut(s)	565, 718, 734
Asp700I	GAANNNNTTC	1 cut(s)	314
AspLEI	GCGC	3 cut(s)	203, 378, 577
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	658
AsuHPI	GGTGA	5 cut(s)	70, 115, 160, 562, 764
AvaII	GGWCC	1 cut(s)	382
BalI	TGGCCA	2 cut(s)	257, 533
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	577, 721, 730
BccI	CCATC	4 cut(s)	55, 137, 365, 542
BceAI	ACGGC	5 cut(s)	146, 199, 255, 300, 310
BcgI	CGANNNNNNTGC	4 cut(s)	367, 401, 574, 608
BciT130I	CCWGG	1 cut(s)	572
BcnI	CCSGG	1 cut(s)	658
BfoI	RGCGCY	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	580
BglI	GCCNNNNNGGC	2 cut(s)	183, 254
BisI	GCNGC	9 cut(s)	6, 156, 159, 187, 222, 225, 566, 719, 735
BlsI	GCNGC	9 cut(s)	7, 157, 160, 188, 223, 226, 567, 720, 736
Bme1390I	CCNGG	2 cut(s)	572, 658
Bme18I	GGWCC	1 cut(s)	382
BmgBI	CACGTC	2 cut(s)	253, 295
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	2 cut(s)	193, 202
BmrFI	CCNGG	2 cut(s)	572, 658
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	578
BpuEI	CTTGAG	2 cut(s)	122, 743
BpuMI	CCSGG	1 cut(s)	658
Bsa29I	ATCGAT	1 cut(s)	699
BsaHI	GRCGYC	2 cut(s)	201, 453
BsaJI	CCNNGG	4 cut(s)	196, 237, 282, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	572
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	4 cut(s)	196, 237, 282, 543
BseGI	GGATG	3 cut(s)	50, 129, 441
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseRI	GAGGAG	7 cut(s)	58, 103, 136, 139, 205, 394, 740
BseXI	GCAGC	3 cut(s)	577, 721, 730
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	5 cut(s)	5, 248, 257, 533, 656
BshNI	GGYRCC	1 cut(s)	200
BshVI	ATCGAT	1 cut(s)	699
BsiSI	CCGG	1 cut(s)	657
BslI	CCNNNNNNNGG	1 cut(s)	475
BsnI	GGCC	5 cut(s)	5, 248, 257, 533, 656
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	303, 624, 640
BspANI	GGCC	5 cut(s)	5, 248, 257, 533, 656
BspDI	ATCGAT	1 cut(s)	699
BspLI	GGNNCC	2 cut(s)	193, 202
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	2 cut(s)	632, 635
BspT107I	GGYRCC	1 cut(s)	200
BssECI	CCNNGG	4 cut(s)	196, 237, 282, 543
BssMI	GATC	3 cut(s)	303, 624, 640
BssNI	GRCGYC	2 cut(s)	201, 453
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	427, 667
BstACI	GRCGYC	2 cut(s)	201, 453
BstC8I	GCNNGC	4 cut(s)	229, 289, 323, 531
BstDSI	CCRYGG	2 cut(s)	237, 282
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	3 cut(s)	50, 129, 441
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	3 cut(s)	203, 378, 577
BstKTI	GATC	3 cut(s)	306, 627, 643
BstMBI	GATC	3 cut(s)	303, 624, 640
BstMWI	GCNNNNNNNGC	7 cut(s)	183, 200, 233, 254, 562, 574, 581
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	570, 656
BstV1I	GCAGC	3 cut(s)	577, 721, 730
BstV2I	GAAGAC	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	5 cut(s)	5, 248, 257, 533, 656
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	2 cut(s)	237, 282
BtrI	CACGTC	2 cut(s)	253, 295
BtsCI	GGATG	3 cut(s)	50, 129, 441
BtsIMutI	CAGTG	1 cut(s)	663
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	4 cut(s)	229, 289, 323, 531
CaiI	CAGNNNCTG	2 cut(s)	571, 601
CfoI	GCGC	3 cut(s)	203, 378, 577
Cfr13I	GGNCC	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	699
CseI	GACGC	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	633, 668
DinI	GGCGCC	1 cut(s)	202
DpnI	GATC	3 cut(s)	305, 626, 642
DpnII	GATC	3 cut(s)	303, 624, 640
EaeI	YGGCCR	5 cut(s)	3, 246, 255, 531, 654
EciI	GGCGGA	4 cut(s)	142, 164, 204, 208
Eco24I	GRGCYC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	196
EgeI	GGCGCC	1 cut(s)	202
EheI	GGCGCC	1 cut(s)	202
FaiI	YATR	3 cut(s)	473, 675, 772
FauI	CCCGC	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	9 cut(s)	6, 156, 159, 187, 222, 225, 566, 719, 735
FokI	GGATG	3 cut(s)	37, 116, 428
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	9 cut(s)	6, 156, 159, 187, 222, 225, 566, 719, 735
GlaI	GCGC	3 cut(s)	202, 377, 576
GluI	GCNGC	9 cut(s)	6, 156, 159, 187, 222, 225, 566, 719, 735
GsuI	CTGGAG	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	5 cut(s)	5, 248, 257, 533, 656
HapII	CCGG	1 cut(s)	657
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	3 cut(s)	203, 378, 577
Hin1I	GRCGYC	2 cut(s)	201, 453
Hin6I	GCGC	3 cut(s)	201, 376, 575
HinP1I	GCGC	3 cut(s)	201, 376, 575
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	2 cut(s)	646, 692
HinfI	GANTC	2 cut(s)	462, 560
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	5 cut(s)	70, 115, 160, 562, 764
Hpy166II	GTNNAC	3 cut(s)	451, 505, 663
Hpy188III	TCNNGA	3 cut(s)	307, 538, 628
Hpy8I	GTNNAC	3 cut(s)	451, 505, 663
Hpy99I	CGWCG	7 cut(s)	167, 254, 296, 331, 392, 452, 455
HpyAV	CCTTC	3 cut(s)	112, 118, 130
HpyCH4III	ACNGT	2 cut(s)	427, 667
HpyCH4IV	ACGT	3 cut(s)	252, 294, 618
HpyCH4V	TGCA	1 cut(s)	595
HpyF10VI	GCNNNNNNNGC	7 cut(s)	183, 200, 233, 254, 562, 574, 581
HpySE526I	ACGT	3 cut(s)	252, 294, 618
Hsp92I	GRCGYC	2 cut(s)	201, 453
HspAI	GCGC	3 cut(s)	201, 376, 575
KasI	GGCGCC	1 cut(s)	200
Kzo9I	GATC	3 cut(s)	303, 624, 640
LmnI	GCTCC	3 cut(s)	191, 526, 739
Lsp1109I	GCAGC	3 cut(s)	577, 721, 730
MaeII	ACGT	3 cut(s)	252, 294, 618
MaeIII	GTNAC	2 cut(s)	166, 538
MalI	GATC	3 cut(s)	305, 626, 642
MboI	GATC	3 cut(s)	303, 624, 640
MboII	GAAGA	6 cut(s)	307, 313, 325, 334, 625, 724
MhlI	GDGCHC	1 cut(s)	196
MlsI	TGGCCA	2 cut(s)	257, 533
MluCI	AATT	2 cut(s)	430, 766
MluNI	TGGCCA	2 cut(s)	257, 533
Mly113I	GGCGCC	1 cut(s)	201
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	3 cut(s)	37, 288, 439
Mox20I	TGGCCA	2 cut(s)	257, 533
MroXI	GAANNNNTTC	1 cut(s)	314
MscI	TGGCCA	2 cut(s)	257, 533
MseI	TTAA	1 cut(s)	759
Msp20I	TGGCCA	2 cut(s)	257, 533
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	2 cut(s)	572, 658
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	7 cut(s)	183, 200, 233, 254, 562, 574, 581
NarI	GGCGCC	1 cut(s)	201
NciI	CCSGG	1 cut(s)	658
NdeII	GATC	3 cut(s)	303, 624, 640
NlaIV	GGNNCC	2 cut(s)	193, 202
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	166, 538
PaqCI	CACCTGC	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	462
PkrI	GCNGC	9 cut(s)	7, 157, 160, 188, 223, 226, 567, 720, 736
PleI	GAGTC	1 cut(s)	568
PluTI	GGCGCC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	772
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	2 cut(s)	193, 202
PspPI	GGNCC	1 cut(s)	382
PspPPI	RGGWCCY	1 cut(s)	382
PstNI	CAGNNNCTG	2 cut(s)	571, 601
SalI	GTCGAC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	759
SatI	GCNGC	9 cut(s)	6, 156, 159, 187, 222, 225, 566, 719, 735
Sau3AI	GATC	3 cut(s)	303, 624, 640
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	2 cut(s)	572, 658
SduI	GDGCHC	1 cut(s)	196
SfiI	GGCCNNNNNGGCC	1 cut(s)	254
SfoI	GGCGCC	1 cut(s)	202
SgrDI	CGTCGACG	1 cut(s)	449
SinI	GGWCC	1 cut(s)	382
SmlI	CTYRAG	2 cut(s)	137, 722
SmoI	CTYRAG	2 cut(s)	137, 722
Sse9I	AATT	2 cut(s)	430, 766
SspDI	GGCGCC	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	570, 656
TaaI	ACNGT	2 cut(s)	427, 667
TaiI	ACGT	3 cut(s)	255, 297, 621
TaqII	GACCGA	1 cut(s)	319
TasI	AATT	2 cut(s)	430, 766
TauI	GCSGC	6 cut(s)	8, 158, 161, 189, 224, 227
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	759
Tru9I	TTAA	1 cut(s)	759
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	2 cut(s)	166, 538
TseI	GCWGC	3 cut(s)	565, 718, 734
Tsp45I	GTSAC	2 cut(s)	166, 538
TspDTI	ATGAA	2 cut(s)	224, 334
TspGWI	ACGGA	3 cut(s)	533, 539, 647
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	382
XagI	CCTNNNNNAGG	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	450
XmnI	GAANNNNTTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.