Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Reverse (-)

5814510 .. 5815268

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1043200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCGCCCTCCAACACACCATAATCTCTCTCCAATCCAAAACCCCATCCCCACCACTCTCCTCCGCCCTCACCCCGCGGACCACCACTCTCTCCTTCTCCTTCTCCTCCACCTTCTCCCCCCTCCACCTCAAACTCTCCTCCTCAGCCCTCACCGCCCGCCGCAACGGCTCCGGATCCCTCGGCGCCCGCATGAACGCCTCTGCCGCCGCCAGCTACGCCTCCGCGCTAGCCGACGTGGCGAACTCGAACAACACCCTCGAAGCCACCAGCGGCGACGTGGAAAAGATCGAGAAGTTCTTCGGCGAGCCGTCGGTGTTCGACTTCTTCATCAACCCCACAATCGGCCTGGAGAAGAAGCGGCAGGTGCTGGACGACATCGCCAAGTCGTCGGCGCTGCAGCCGCACACGATCAACTTCCTCAACATCCTGGTGGACGCGAAGCGGATCGACCTGATAAAGGACATCGTGAAGGAGTTCGAGGTGGTGTACAACAAGATAACGGACACGGAGCTGGCGATCGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCGCAGATAGCGAAGCAGGTGCAGAAGCTGACGGGGGCGCAGAACGTGAGGATCAAGACGGAGATTGATCCGAGCCTGGTGGCGGGGTTCACGGTGAGGTACGGGCAGTCGGGGTCGAAGCTTATTGACTTGAGCGTGAAGAAGCAGCTGGAGGAGATTGCGGCGGAGCTTGATTTGGGTGACATTAAGCTCAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

253

Amino Acids

27.2

Weight (kDa)

7.89

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	70 - 243	8.1e-41	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	757
AarI	CACCTGC	2 cut(s)	355, 565
Acc36I	ACCTGC	2 cut(s)	355, 565
AccB1I	GGYRCC	1 cut(s)	185
AccII	CGCG	3 cut(s)	79, 227, 440
AccIII	TCCGGA	1 cut(s)	173
AclWI	GGATC	5 cut(s)	171, 184, 455, 617, 620
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	491, 659
AfiI	CCNNNNNNNGG	3 cut(s)	344, 460, 640
AjiI	CACGTC	2 cut(s)	238, 280
AjnI	CCWGG	3 cut(s)	348, 429, 633
AluBI	AGCT	9 cut(s)	216, 514, 528, 541, 586, 679, 706, 727, 748
AluI	AGCT	9 cut(s)	216, 514, 528, 541, 586, 679, 706, 727, 748
Alw21I	GWGCWC	1 cut(s)	530
AlwI	GGATC	5 cut(s)	171, 184, 455, 617, 620
AlwNI	CAGNNNCTG	2 cut(s)	370, 586
Aor13HI	TCCGGA	1 cut(s)	173
AoxI	GGCC	2 cut(s)	3, 346
ApeKI	GCWGC	4 cut(s)	397, 400, 550, 703
Asp700I	GAANNNNTTC	2 cut(s)	299, 476
AspLEI	GCGC	5 cut(s)	188, 229, 397, 562, 598
AspS9I	GGNCC	1 cut(s)	81
AsuHPI	GGTGA	5 cut(s)	64, 145, 547, 664, 749
AsuNHI	GCTAGC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	81
BamHI	GGATCC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	530
BbvCI	CCTCAGC	1 cut(s)	145
BbvI	GCAGC	4 cut(s)	384, 412, 562, 715
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	2 cut(s)	184, 295
BcgI	CGANNNNNNTGC	2 cut(s)	559, 593
BciT130I	CCWGG	3 cut(s)	350, 431, 635
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	398
BfoI	RGCGCY	2 cut(s)	189, 398
BfuAI	ACCTGC	2 cut(s)	355, 565
BglI	GCCNNNNNGGC	2 cut(s)	168, 239
Bme1390I	CCNGG	3 cut(s)	350, 431, 635
Bme18I	GGWCC	1 cut(s)	81
BmgBI	CACGTC	2 cut(s)	238, 280
BmgT120I	GGNCC	1 cut(s)	81
BmiI	GGNNCC	3 cut(s)	172, 178, 187
BmrFI	CCNGG	3 cut(s)	350, 431, 635
BmtI	GCTAGC	1 cut(s)	233
BpmI	CTGGAG	3 cut(s)	371, 563, 728
Bpu10I	CCTNAGC	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	709
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	77, 181
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 460, 640
BseAI	TCCGGA	1 cut(s)	173
BseBI	CCWGG	3 cut(s)	350, 431, 635
BseDI	CCNNGG	2 cut(s)	77, 181
BseGI	GGATG	2 cut(s)	47, 426
BseLI	CCNNNNNNNGG	3 cut(s)	344, 460, 640
BseMII	CTCAG	1 cut(s)	159
BseRI	GAGGAG	5 cut(s)	52, 97, 130, 133, 725
BseXI	GCAGC	4 cut(s)	384, 412, 562, 715
BsgI	GTGCAG	1 cut(s)	599
Bsh1236I	CGCG	3 cut(s)	79, 227, 440
Bsh1285I	CGRYCG	1 cut(s)	522
BshFI	GGCC	2 cut(s)	5, 348
BshNI	GGYRCC	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	3 cut(s)	344, 460, 640
BsnI	GGCC	2 cut(s)	5, 348
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp13I	TCCGGA	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	7 cut(s)	176, 288, 411, 447, 519, 609, 625
BspANI	GGCC	2 cut(s)	5, 348
BspCNI	CTCAG	1 cut(s)	158
BspEI	TCCGGA	1 cut(s)	173
BspFNI	CGCG	3 cut(s)	79, 227, 440
BspLI	GGNNCC	3 cut(s)	172, 178, 187
BspMAI	CTGCAG	1 cut(s)	402
BspMI	ACCTGC	2 cut(s)	355, 565
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	5 cut(s)	171, 184, 455, 617, 620
BspT107I	GGYRCC	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	489
BssECI	CCNNGG	2 cut(s)	77, 181
BssMI	GATC	7 cut(s)	176, 288, 411, 447, 519, 609, 625
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	350, 431, 635
Bst4CI	ACNGT	1 cut(s)	652
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	6 cut(s)	160, 190, 214, 231, 308, 516
BstDEI	CTNAG	1 cut(s)	145
BstDSI	CCRYGG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	2 cut(s)	47, 426
BstFNI	CGCG	3 cut(s)	79, 227, 440
BstH2I	RGCGCY	2 cut(s)	189, 398
BstHHI	GCGC	5 cut(s)	188, 229, 397, 562, 598
BstKTI	GATC	7 cut(s)	179, 291, 414, 450, 522, 612, 628
BstMBI	GATC	7 cut(s)	176, 288, 411, 447, 519, 609, 625
BstMCI	CGRYCG	1 cut(s)	522
BstNI	CCWGG	3 cut(s)	350, 431, 635
BstSCI	CCNGG	3 cut(s)	348, 429, 633
BstSFI	CTRYAG	1 cut(s)	398
BstUI	CGCG	3 cut(s)	79, 227, 440
BstV1I	GCAGC	4 cut(s)	384, 412, 562, 715
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	5, 348
BtgI	CCRYGG	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	364
BtrI	CACGTC	2 cut(s)	238, 280
BtsCI	GGATG	2 cut(s)	47, 426
BveI	ACCTGC	2 cut(s)	355, 565
Cac8I	GCNNGC	6 cut(s)	160, 190, 214, 231, 308, 516
CaiI	CAGNNNCTG	2 cut(s)	370, 586
CfoI	GCGC	5 cut(s)	188, 229, 397, 562, 598
Cfr13I	GGNCC	1 cut(s)	81
Cfr42I	CCGCGG	1 cut(s)	80
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	2 cut(s)	490, 658
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	2 cut(s)	490, 658
DdeI	CTNAG	1 cut(s)	145
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	7 cut(s)	178, 290, 413, 449, 521, 611, 627
DpnII	GATC	7 cut(s)	176, 288, 411, 447, 519, 609, 625
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	55, 737
Ecl136II	GAGCTC	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	528
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoRII	CCWGG	3 cut(s)	348, 429, 633
EcoT38I	GRGCYC	1 cut(s)	530
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
FaeI	CATG	1 cut(s)	196
FaiI	YATR	3 cut(s)	23, 194, 757
FatI	CATG	1 cut(s)	192
FauI	CCCGC	4 cut(s)	84, 167, 197, 634
FokI	GGATG	2 cut(s)	34, 413
FriOI	GRGCYC	1 cut(s)	530
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	5 cut(s)	187, 228, 396, 561, 597
GsuI	CTGGAG	3 cut(s)	371, 563, 728
HaeII	RGCGCY	2 cut(s)	189, 398
HaeIII	GGCC	2 cut(s)	5, 348
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	5 cut(s)	188, 229, 397, 562, 598
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	5 cut(s)	186, 227, 395, 560, 596
HinP1I	GCGC	5 cut(s)	186, 227, 395, 560, 596
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	1 cut(s)	545
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	5 cut(s)	64, 145, 547, 664, 749
Hpy166II	GTNNAC	3 cut(s)	436, 490, 648
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	5 cut(s)	174, 292, 469, 523, 613
Hpy8I	GTNNAC	3 cut(s)	436, 490, 648
Hpy99I	CGWCG	4 cut(s)	239, 281, 316, 394
HpyAV	CCTTC	4 cut(s)	106, 112, 124, 466
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	3 cut(s)	237, 279, 603
HpyCH4V	TGCA	2 cut(s)	400, 580
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	3 cut(s)	237, 279, 603
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	5 cut(s)	186, 227, 395, 560, 596
KasI	GGCGCC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	173
KspI	CCGCGG	1 cut(s)	80
Kzo9I	GATC	7 cut(s)	176, 288, 411, 447, 519, 609, 625
LmnI	GCTCC	3 cut(s)	176, 511, 724
Lsp1109I	GCAGC	4 cut(s)	384, 412, 562, 715
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	3 cut(s)	237, 279, 603
MaeIII	GTNAC	1 cut(s)	737
MalI	GATC	7 cut(s)	178, 290, 413, 449, 521, 611, 627
MboI	GATC	7 cut(s)	176, 288, 411, 447, 519, 609, 625
MboII	GAAGA	4 cut(s)	292, 319, 367, 709
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	1 cut(s)	751
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	37
MroI	TCCGGA	1 cut(s)	173
MroXI	GAANNNNTTC	2 cut(s)	299, 476
MseI	TTAA	1 cut(s)	744
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	3 cut(s)	79, 273, 706
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	350, 431, 635
MvaI	CCWGG	3 cut(s)	350, 431, 635
MvnI	CGCG	3 cut(s)	79, 227, 440
NarI	GGCGCC	1 cut(s)	186
NdeII	GATC	7 cut(s)	176, 288, 411, 447, 519, 609, 625
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	172, 178, 187
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	737
PaqCI	CACCTGC	2 cut(s)	355, 565
PcsI	WCGNNNNNNNCGW	1 cut(s)	515
PdmI	GAANNNNTTC	2 cut(s)	299, 476
Ple19I	CGATCG	1 cut(s)	522
PleI	GAGTC	1 cut(s)	553
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	757
Psp124BI	GAGCTC	1 cut(s)	530
Psp6I	CCWGG	3 cut(s)	348, 429, 633
PspGI	CCWGG	3 cut(s)	348, 429, 633
PspN4I	GGNNCC	3 cut(s)	172, 178, 187
PspPI	GGNCC	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	402
PstNI	CAGNNNCTG	2 cut(s)	370, 586
PsuI	RGATCY	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	522
PvuII	CAGCTG	1 cut(s)	706
RsaI	GTAC	2 cut(s)	491, 659
RsaNI	GTAC	2 cut(s)	490, 658
RseI	CAYNNNNRTG	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	530
SacII	CCGCGG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	744
Sau3AI	GATC	7 cut(s)	176, 288, 411, 447, 519, 609, 625
Sau96I	GGNCC	1 cut(s)	81
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	3 cut(s)	350, 431, 635
SduI	GDGCHC	1 cut(s)	530
SfcI	CTRYAG	1 cut(s)	398
SfoI	GGCGCC	1 cut(s)	187
Sfr303I	CCGCGG	1 cut(s)	80
SgrBI	CCGCGG	1 cut(s)	80
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
Sse9I	AATT	1 cut(s)	751
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	530
StyD4I	CCNGG	3 cut(s)	348, 429, 633
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	3 cut(s)	240, 282, 606
TaqI	TCGA	7 cut(s)	248, 261, 291, 321, 450, 480, 674
TasI	AATT	1 cut(s)	751
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	8 cut(s)	8, 165, 209, 212, 276, 364, 406, 722
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TseFI	GTSAC	1 cut(s)	737
TseI	GCWGC	4 cut(s)	397, 400, 550, 703
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	2 cut(s)	209, 319
TspGWI	ACGGA	3 cut(s)	518, 524, 632
VpaK11BI	GGWCC	1 cut(s)	81
XagI	CCTNNNNNAGG	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	2 cut(s)	277, 346
XmnI	GAANNNNTTC	2 cut(s)	299, 476
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.