RLG00000008593

ATP synthase delta chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012014
Physical Location & Seq
Forward (+)
32841550 .. 32842026
477 bp
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UTR
Exon/CDS
Intron
RLM00000008593

Sequence Viewer

Length: 441 bp
ATGGGTTATGTTGTCGGTGCCAACAACACCCTGGACGCCACCGTCGTCGACGTGGAGAAGATCGAGAAGTTCTTCGCGGAGCCGTCGGTGTTCGACTTCTTCACCAACCCGATAGTTGACCTGGAGAAGAAGCGCAGGCCTTACACGGTGAACTTCCTCAACATTTTGGTTAAAGCCAAGAGAATCGACGTCATCAAGGACATTGTCAAGGAGTTTGAGATCGTTTACAACAAGCTTACGGATATGGAGCTGGCCATAGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCGCAAATAGCCAAGCAGATGCAGAAGCTCACTGGTGCCAAGAATGTCAGGTTCAAGTCGGAGATTGATCCCAGTTTGGTTGCGGGGTTCACTGTGAGATATGGCAATTCTGGGTCTAAGCTGATTGATATGAGTGTCAAGAAGTAG

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

9.22

Isoelectric Point (pI)

26.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OSCP PF00213 10 - 145 1e-23 ATP synthase delta (OSCP) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012014)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09650
fragaria_vesca FvH4_2g12490
malus_domestica MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica Prupe.8G048900_v2.0.a1
pyrus_communis pycom05g03070 pycom10g03020
rosa_chinensis RchiOBHm_Chr6g0272941
rosa_laevigata RLG00000008593 RLG00000013654
rosa_multiflora Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii Rroxscaffold_7G00195900
rosa_rugosa Rorug06G0071700
rosa_samantha Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana Rw6G016240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AatII GACGTC 1 cut(s) 192
AccB1I GGYRCC 2 cut(s) 17, 329
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 77
AciI CCGC 2 cut(s) 77, 377
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 252
AcyI GRCGYC 2 cut(s) 36, 189
AgsI TTSAA 1 cut(s) 349
AjiI CACGTC 1 cut(s) 52
AjnI CCWGG 2 cut(s) 30, 120
AluBI AGCT 6 cut(s) 235, 250, 264, 277, 322, 415
AluI AGCT 6 cut(s) 235, 250, 264, 277, 322, 415
Alw21I GWGCWC 1 cut(s) 266
AlwI GGATC 1 cut(s) 356
AoxI GGCC 2 cut(s) 137, 252
ApeKI GCWGC 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 2 cut(s) 135, 298
AsuHPI GGTGA 3 cut(s) 94, 160, 283
BalI TGGCCA 1 cut(s) 254
BanI GGYRCC 2 cut(s) 17, 329
BanII GRGCYC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 298
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 32, 122
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 32, 122
BmgBI CACGTC 1 cut(s) 52
BmiI GGNNCC 3 cut(s) 19, 81, 331
BmrFI CCNGG 2 cut(s) 32, 122
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 360
BpmI CTGGAG 2 cut(s) 143, 299
BsaHI GRCGYC 2 cut(s) 36, 189
BsaJI CCNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 331, 366
BseBI CCWGG 2 cut(s) 32, 122
BseDI CCNNGG 1 cut(s) 30
BseNI ACTGG 2 cut(s) 331, 366
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 2 cut(s) 139, 254
BshNI GGYRCC 2 cut(s) 17, 329
BsiHKAI GWGCWC 1 cut(s) 266
BsnI GGCC 2 cut(s) 139, 254
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 3 cut(s) 60, 219, 361
BspACI CCGC 2 cut(s) 77, 377
BspANI GGCC 2 cut(s) 139, 254
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 3 cut(s) 19, 81, 331
BspPI GGATC 1 cut(s) 356
BspT107I GGYRCC 2 cut(s) 17, 329
BsrI ACTGG 2 cut(s) 331, 366
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 3 cut(s) 60, 219, 361
BssNI GRCGYC 2 cut(s) 36, 189
Bst2UI CCWGG 2 cut(s) 32, 122
Bst4CI ACNGT 3 cut(s) 43, 148, 388
BstACI GRCGYC 2 cut(s) 36, 189
BstC8I GCNNGC 2 cut(s) 137, 252
BstDEI CTNAG 1 cut(s) 411
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 135, 298
BstKTI GATC 3 cut(s) 63, 222, 364
BstMBI GATC 3 cut(s) 60, 219, 361
BstMWI GCNNNNNNNGC 3 cut(s) 283, 295, 302
BstNI CCWGG 2 cut(s) 32, 122
BstSCI CCNGG 2 cut(s) 30, 120
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 139, 254
BtrI CACGTC 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 324, 384
Cac8I GCNNGC 2 cut(s) 137, 252
CfoI GCGC 2 cut(s) 135, 298
CseI GACGC 1 cut(s) 44
DdeI CTNAG 1 cut(s) 411
DpnI GATC 3 cut(s) 62, 221, 363
DpnII GATC 3 cut(s) 60, 219, 361
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 264
Eco147I AGGCCT 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 264
EcoICRI GAGCTC 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 30, 120
EcoT38I GRGCYC 1 cut(s) 266
FaiI YATR 5 cut(s) 9, 245, 257, 396, 425
FauI CCCGC 1 cut(s) 370
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 287
GlaI GCGC 2 cut(s) 134, 297
GluI GCNGC 1 cut(s) 287
GsuI CTGGAG 2 cut(s) 143, 299
HaeIII GGCC 2 cut(s) 139, 254
HgaI GACGC 1 cut(s) 44
HhaI GCGC 2 cut(s) 135, 298
Hin1I GRCGYC 2 cut(s) 36, 189
Hin6I GCGC 2 cut(s) 133, 296
HinP1I GCGC 2 cut(s) 133, 296
HincII GTYRAC 2 cut(s) 49, 118
HindII GTYRAC 2 cut(s) 49, 118
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 2 cut(s) 183, 281
HphI GGTGA 3 cut(s) 94, 160, 283
Hpy166II GTNNAC 5 cut(s) 49, 118, 151, 226, 384
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 2 cut(s) 64, 433
Hpy8I GTNNAC 5 cut(s) 49, 118, 151, 226, 384
Hpy99I CGWCG 5 cut(s) 47, 50, 53, 88, 191
HpyCH4III ACNGT 3 cut(s) 43, 148, 388
HpyCH4IV ACGT 2 cut(s) 51, 189
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 295, 302
HpyF3I CTNAG 1 cut(s) 411
HpySE526I ACGT 2 cut(s) 51, 189
Hsp92I GRCGYC 2 cut(s) 36, 189
HspAI GCGC 2 cut(s) 133, 296
Kzo9I GATC 3 cut(s) 60, 219, 361
LmnI GCTCC 2 cut(s) 79, 247
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 303
MaeII ACGT 2 cut(s) 51, 189
MalI GATC 3 cut(s) 62, 221, 363
MboI GATC 3 cut(s) 60, 219, 361
MboII GAAGA 4 cut(s) 64, 70, 91, 139
MhlI GDGCHC 1 cut(s) 266
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 1 cut(s) 400
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 1 cut(s) 167
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 32, 122
MvaI CCWGG 2 cut(s) 32, 122
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 3 cut(s) 283, 295, 302
NdeII GATC 3 cut(s) 60, 219, 361
NlaIV GGNNCC 3 cut(s) 19, 81, 331
PceI AGGCCT 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 183
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 288
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp124BI GAGCTC 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 30, 120
PspGI CCWGG 2 cut(s) 30, 120
PspN4I GGNNCC 3 cut(s) 19, 81, 331
PsyI GACNNNGTC 1 cut(s) 203
SacI GAGCTC 1 cut(s) 266
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 3 cut(s) 60, 219, 361
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 32, 122
SduI GDGCHC 1 cut(s) 266
SfaNI GCATC 1 cut(s) 303
SgrDI CGTCGACG 1 cut(s) 47
Sse9I AATT 1 cut(s) 400
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 2 cut(s) 77, 377
SstI GAGCTC 1 cut(s) 266
StuI AGGCCT 1 cut(s) 139
StyD4I CCNGG 2 cut(s) 30, 120
TaaI ACNGT 3 cut(s) 43, 148, 388
TaiI ACGT 2 cut(s) 54, 192
TaqI TCGA 4 cut(s) 48, 63, 93, 186
TasI AATT 1 cut(s) 400
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 331, 391
TseI GCWGC 1 cut(s) 286
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 2 cut(s) 331, 391
Tth111I GACNNNGTC 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 71
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.