Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Forward (+)

30965034 .. 30966511

Gene Structure 1478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG189900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCACCCTCCAACAAACCCCAATCTCTCTCCAATCCAAAACCCCACCGCCACCGCTCTCCTCCGCCCTCACCGCCAGATCCACCGCCGTCTCCTTCTCCTCCACATTCACCCCCCTCAACCTCAAACTCAAACTCACCGCCGCAGCAGCATCCACCTCCGTCCGCCGCGGAGGAGGGGCGTGCGGCGCCCGGATGAACGCCACCGCCGCCGCAAGCTACGCGGCGGCTCTAGCCGACGTGGCGATATCCAACAACACCCTGGACGCCACCGTCGCCGACGTGGAGAAGATCGAGGAGTTCTTCGCGGAGCCGTCGGTGTTCGACTTCTTCACCAACCCCACAGTCGGCCTGGAGAAGAAGCGCGGCGTCCTCGACGAAATCGCCAAGTCGTCGGCGCTGCAGCCCCACACGGTGAACTTCCTCAACATTTTGGTTGAGGCCAAGAGAATCGACGTCATCAAGGACATTGTCAAGGAGTTTGAGATCGTTTACAACAAGCTTACGGATACGGAGCTGGCCATAGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCGCAGATAGCCAAGCAGGTGCAGAAGCTCACTGGCGCCAAGAATGTCAGGATCAAGTCGGAGATTGATCCCAGTTTGGTTGCGGGGTTCACTGTGAGATATGGCAATTCTGGGTCTAAGCTGATTGATATGAGTGTCAAGAAGCAGCTTGAGGAGATTGCTGCCCAGCTCGATTTGGGTGACATCAAGCTCAATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

253

Amino Acids

27.03

Weight (kDa)

8.54

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	71 - 244	3.3e-40	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	568
AasI	GACNNNNNNGTC	1 cut(s)	272
AatII	GACGTC	1 cut(s)	459
Acc36I	ACCTGC	1 cut(s)	568
AccB1I	GGYRCC	2 cut(s)	188, 596
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	4 cut(s)	171, 224, 308, 366
AclWI	GGATC	3 cut(s)	75, 620, 623
AcoI	YGGCCR	2 cut(s)	3, 519
AcyI	GRCGYC	5 cut(s)	189, 267, 369, 456, 597
AdeI	CACNNNGTG	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	347
AjiI	CACGTC	2 cut(s)	241, 283
AjnI	CCWGG	2 cut(s)	261, 351
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	3 cut(s)	75, 620, 623
AoxI	GGCC	4 cut(s)	3, 349, 441, 519
ApeKI	GCWGC	7 cut(s)	146, 149, 400, 403, 553, 706, 722
AspLEI	GCGC	5 cut(s)	191, 366, 400, 565, 599
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	7 cut(s)	64, 103, 130, 325, 427, 550, 752
BalI	TGGCCA	2 cut(s)	5, 521
BanI	GGYRCC	2 cut(s)	188, 596
BanII	GRGCYC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	7 cut(s)	158, 161, 387, 415, 565, 709, 718
BceAI	ACGGC	2 cut(s)	74, 298
BciT130I	CCWGG	2 cut(s)	263, 353
BciVI	GTATCC	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	2 cut(s)	401, 758
BfoI	RGCGCY	3 cut(s)	192, 401, 600
BfuAI	ACCTGC	1 cut(s)	568
BfuI	GTATCC	1 cut(s)	502
BglI	GCCNNNNNGGC	1 cut(s)	242
Bme1390I	CCNGG	3 cut(s)	193, 263, 353
BmgBI	CACGTC	2 cut(s)	241, 283
BmiI	GGNNCC	3 cut(s)	190, 312, 598
BmrFI	CCNGG	3 cut(s)	193, 263, 353
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	627
BpmI	CTGGAG	2 cut(s)	374, 566
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	193
BsaHI	GRCGYC	5 cut(s)	189, 267, 369, 456, 597
BsaJI	CCNNGG	2 cut(s)	169, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	598, 633
BseBI	CCWGG	2 cut(s)	263, 353
BseDI	CCNNGG	2 cut(s)	169, 261
BseGI	GGATG	2 cut(s)	152, 201
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseNI	ACTGG	2 cut(s)	598, 633
BseRI	GAGGAG	5 cut(s)	52, 91, 189, 311, 728
BseXI	GCAGC	7 cut(s)	158, 161, 387, 415, 565, 709, 718
BseYI	CCCAGC	1 cut(s)	726
BsgI	GTGCAG	1 cut(s)	602
Bsh1236I	CGCG	4 cut(s)	171, 224, 308, 366
BshFI	GGCC	4 cut(s)	5, 351, 443, 521
BshNI	GGYRCC	2 cut(s)	188, 596
BsiHKAI	GWGCWC	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	97
BsmBI	CGTCTC	1 cut(s)	97
BsnI	GGCC	4 cut(s)	5, 351, 443, 521
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	5 cut(s)	80, 291, 486, 612, 628
BspANI	GGCC	4 cut(s)	5, 351, 443, 521
BspFNI	CGCG	4 cut(s)	171, 224, 308, 366
BspLI	GGNNCC	3 cut(s)	190, 312, 598
BspMAI	CTGCAG	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	3 cut(s)	75, 620, 623
BspT107I	GGYRCC	2 cut(s)	188, 596
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	598, 633
BssECI	CCNNGG	2 cut(s)	169, 261
BssMI	GATC	5 cut(s)	80, 291, 486, 612, 628
BssNI	GRCGYC	5 cut(s)	189, 267, 369, 456, 597
Bst2UI	CCWGG	2 cut(s)	263, 353
Bst4CI	ACNGT	4 cut(s)	274, 346, 415, 655
BstACI	GRCGYC	5 cut(s)	189, 267, 369, 456, 597
BstC8I	GCNNGC	3 cut(s)	184, 217, 519
BstDEI	CTNAG	1 cut(s)	678
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	152, 201
BstFNI	CGCG	4 cut(s)	171, 224, 308, 366
BstH2I	RGCGCY	3 cut(s)	192, 401, 600
BstHHI	GCGC	5 cut(s)	191, 366, 400, 565, 599
BstKTI	GATC	5 cut(s)	83, 294, 489, 615, 631
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	5 cut(s)	80, 291, 486, 612, 628
BstNI	CCWGG	2 cut(s)	263, 353
BstSCI	CCNGG	3 cut(s)	191, 261, 351
BstSFI	CTRYAG	2 cut(s)	401, 758
BstUI	CGCG	4 cut(s)	171, 224, 308, 366
BstV1I	GCAGC	7 cut(s)	158, 161, 387, 415, 565, 709, 718
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	4 cut(s)	5, 351, 443, 521
BtgI	CCRYGG	1 cut(s)	169
BtrI	CACGTC	2 cut(s)	241, 283
BtsCI	GGATG	2 cut(s)	152, 201
BtsIMutI	CAGTG	2 cut(s)	591, 651
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	3 cut(s)	184, 217, 519
CfoI	GCGC	5 cut(s)	191, 366, 400, 565, 599
Cfr42I	CCGCGG	1 cut(s)	172
CseI	GACGC	2 cut(s)	275, 358
DdeI	CTNAG	1 cut(s)	678
DinI	GGCGCC	2 cut(s)	190, 598
DpnI	GATC	5 cut(s)	82, 293, 488, 614, 630
DpnII	GATC	5 cut(s)	80, 291, 486, 612, 628
DraIII	CACNNNGTG	1 cut(s)	415
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	3, 519
EciI	GGCGGA	2 cut(s)	55, 155
Ecl136II	GAGCTC	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	261, 351
EcoRV	GATATC	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	533
EgeI	GGCGCC	2 cut(s)	190, 598
EheI	GGCGCC	2 cut(s)	190, 598
Esp3I	CGTCTC	1 cut(s)	97
FaiI	YATR	4 cut(s)	524, 663, 692, 760
FauI	CCCGC	1 cut(s)	637
FokI	GGATG	2 cut(s)	139, 208
FriOI	GRGCYC	1 cut(s)	533
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	5 cut(s)	190, 365, 399, 564, 598
GsaI	CCCAGC	1 cut(s)	730
GsuI	CTGGAG	2 cut(s)	374, 566
HaeII	RGCGCY	3 cut(s)	192, 401, 600
HaeIII	GGCC	4 cut(s)	5, 351, 443, 521
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	2 cut(s)	275, 358
HhaI	GCGC	5 cut(s)	191, 366, 400, 565, 599
Hin1I	GRCGYC	5 cut(s)	189, 267, 369, 456, 597
Hin6I	GCGC	5 cut(s)	189, 364, 398, 563, 597
HinP1I	GCGC	5 cut(s)	189, 364, 398, 563, 597
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	2 cut(s)	450, 548
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	7 cut(s)	64, 103, 130, 325, 427, 550, 752
Hpy166II	GTNNAC	3 cut(s)	418, 493, 651
Hpy188I	TCNGA	1 cut(s)	622
Hpy188III	TCNNGA	2 cut(s)	610, 700
Hpy8I	GTNNAC	3 cut(s)	418, 493, 651
Hpy99I	CGWCG	7 cut(s)	242, 278, 284, 319, 380, 397, 458
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	4 cut(s)	274, 346, 415, 655
HpyCH4IV	ACGT	3 cut(s)	240, 282, 456
HpyCH4V	TGCA	2 cut(s)	403, 583
HpyF3I	CTNAG	1 cut(s)	678
HpySE526I	ACGT	3 cut(s)	240, 282, 456
Hsp92I	GRCGYC	5 cut(s)	189, 267, 369, 456, 597
HspAI	GCGC	5 cut(s)	189, 364, 398, 563, 597
KasI	GGCGCC	2 cut(s)	188, 596
KspI	CCGCGG	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	80, 291, 486, 612, 628
LmnI	GCTCC	2 cut(s)	310, 514
Lsp1109I	GCAGC	7 cut(s)	158, 161, 387, 415, 565, 709, 718
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	3 cut(s)	240, 282, 456
MaeIII	GTNAC	1 cut(s)	740
MalI	GATC	5 cut(s)	82, 293, 488, 614, 630
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	5 cut(s)	80, 291, 486, 612, 628
MboII	GAAGA	4 cut(s)	295, 301, 322, 370
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	533
MlsI	TGGCCA	2 cut(s)	5, 521
MluCI	AATT	1 cut(s)	667
MluNI	TGGCCA	2 cut(s)	5, 521
Mly113I	GGCGCC	2 cut(s)	189, 597
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	3 cut(s)	37, 276, 600
Mox20I	TGGCCA	2 cut(s)	5, 521
MscI	TGGCCA	2 cut(s)	5, 521
Msp20I	TGGCCA	2 cut(s)	5, 521
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	3 cut(s)	193, 263, 353
MvaI	CCWGG	2 cut(s)	263, 353
MvnI	CGCG	4 cut(s)	171, 224, 308, 366
NarI	GGCGCC	2 cut(s)	189, 597
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	5 cut(s)	80, 291, 486, 612, 628
NlaIV	GGNNCC	3 cut(s)	190, 312, 598
NmuCI	GTSAC	1 cut(s)	740
PaqCI	CACCTGC	1 cut(s)	568
PfeI	GAWTC	1 cut(s)	450
PflFI	GACNNNGTC	1 cut(s)	470
PleI	GAGTC	1 cut(s)	556
PluTI	GGCGCC	2 cut(s)	192, 600
PpsI	GAGTC	1 cut(s)	556
Psp124BI	GAGCTC	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	261, 351
PspFI	CCCAGC	1 cut(s)	726
PspGI	CCWGG	2 cut(s)	261, 351
PspN4I	GGNNCC	3 cut(s)	190, 312, 598
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	533
SacII	CCGCGG	1 cut(s)	172
Sau3AI	GATC	5 cut(s)	80, 291, 486, 612, 628
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	3 cut(s)	193, 263, 353
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	2 cut(s)	401, 758
SfoI	GGCGCC	2 cut(s)	190, 598
Sfr303I	CCGCGG	1 cut(s)	172
SgrBI	CCGCGG	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	1 cut(s)	667
SspDI	GGCGCC	2 cut(s)	188, 596
SspMI	CTAG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	533
StyD4I	CCNGG	3 cut(s)	191, 261, 351
TaaI	ACNGT	4 cut(s)	274, 346, 415, 655
TaiI	ACGT	3 cut(s)	243, 285, 459
TaqI	TCGA	5 cut(s)	294, 324, 375, 453, 732
TasI	AATT	1 cut(s)	667
TauI	GCSGC	8 cut(s)	146, 171, 189, 212, 215, 227, 230, 369
TfiI	GAWTC	1 cut(s)	450
TscAI	CASTG	2 cut(s)	598, 658
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	7 cut(s)	146, 149, 400, 403, 553, 706, 722
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	1 cut(s)	212
TspGWI	ACGGA	3 cut(s)	151, 521, 527
TspRI	CASTG	2 cut(s)	598, 658
Tth111I	GACNNNGTC	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	2 cut(s)	259, 349
XspI	CTAG	1 cut(s)	233
ZraI	GACGTC	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.