Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012014

Physical Location & Seq

Genomic Coordinates Forward (+)

220350 .. 221111

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1003000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTGCCCTCCAACACACCGCAATCTCTCTCCAATCCAAAACCACCGCATCCCCACCACTCTCCTCCGCCCTCACCCCGCGAACCACCACTCTCGCCTTCTCCTTCTCCTCCACCTTCTCCCCCATCCACCTCAAACTCTCCGCCTCCACCCTCACCGCCCGCCGCACCGGCTCCGGATCCCTCGGCGCCCGCATGAACGCCTCCGCCGCCGCCAGCTACGCCTCCGCGCTAGCCGACGTGGCGAAGTCGAACAATACCCTCGAAACTACCAGCGGCGACGTGGAAAAGATCGAGAAGTTCTTTGGCGAGCCGTCGGTGTTCGACTTCTTCATCAACCCGACCATCGACCTGGAGAAGAAGCGGCAGGTGCTGGACGACATCGCCAAGTCGTCGGCGCTGCAGCCGCACACGATCAACTTCCTGAACATCCTGGTGGACGCCAAGCGCATCGACCTGATAAAGGAGATCGTGAAGGAGTTCGAGGTGGTGTACAACAAGATAACGGACACGGAGTTGGCGATCGTGAGCTCGGTGGTGAAGCTGGAGTCGCAGCACTTGGCGCAGATAGCGAAGCAGGTGCAGAAGCTGACGGGGGCGAAGAATGTGAGGATTAAAACGGAGATTGATCCGAGTTTGGTGGCGGGGTTCACAGTGAGGTATGGGCAGTCCGGGTCCAAGCTTATTGACTTGAGCGTGAAGAAGCAGCTGGAGGAGATTGCGGCGGAGCTTGATTTGGGTGACATTAAGCTCAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009772 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0010287 GO:0010319 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

OSCP

Protein Analysis

254

Amino Acids

27.34

Weight (kDa)

8.65

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OSCP	PF00213	71 - 244	2.5e-41	ATP synthase delta (OSCP) subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09650
fragaria_vesca	FvH4_2g12490
malus_domestica	MD10G1043200.v1.1 MD17G1003000.v1.1
prunus_persica	Prupe.8G048900_v2.0.a1
pyrus_communis	pycom05g03070 pycom10g03020
rosa_chinensis	RchiOBHm_Chr6g0272941
rosa_laevigata	RLG00000008593 RLG00000013654
rosa_multiflora	Rmu_co8370933.1_g000001 Rmu_sc0009966.1_g000013
rosa_roxburghii	Rroxscaffold_7G00195900
rosa_rugosa	Rorug06G0071700
rosa_samantha	Rh6AG187400 Rh6BG190800 Rh6CG189900 Rh6DG181300
rosa_wichuraiana	Rw6G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	760
AarI	CACCTGC	2 cut(s)	358, 568
Acc36I	ACCTGC	2 cut(s)	358, 568
AccB1I	GGYRCC	1 cut(s)	188
AccII	CGCG	2 cut(s)	82, 230
AccIII	TCCGGA	1 cut(s)	176
AclWI	GGATC	3 cut(s)	174, 187, 623
AcyI	GRCGYC	2 cut(s)	189, 441
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	463
AjiI	CACGTC	2 cut(s)	241, 283
AjnI	CCWGG	2 cut(s)	351, 432
AluBI	AGCT	8 cut(s)	219, 531, 544, 589, 682, 709, 730, 751
AluI	AGCT	8 cut(s)	219, 531, 544, 589, 682, 709, 730, 751
Alw21I	GWGCWC	1 cut(s)	533
AlwI	GGATC	3 cut(s)	174, 187, 623
AlwNI	CAGNNNCTG	2 cut(s)	373, 589
Aor13HI	TCCGGA	1 cut(s)	176
ApeKI	GCWGC	5 cut(s)	5, 400, 403, 553, 706
Asp700I	GAANNNNTTC	1 cut(s)	479
AspLEI	GCGC	5 cut(s)	191, 232, 400, 450, 565
AspS9I	GGNCC	1 cut(s)	675
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	4 cut(s)	67, 148, 550, 752
AsuNHI	GCTAGC	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	675
BamHI	GGATCC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	4 cut(s)	387, 415, 565, 718
BccI	CCATC	2 cut(s)	134, 353
BceAI	ACGGC	1 cut(s)	298
BcgI	CGANNNNNNTGC	2 cut(s)	562, 596
BciT130I	CCWGG	2 cut(s)	353, 434
BcnI	CCSGG	1 cut(s)	673
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	2 cut(s)	192, 401
BfuAI	ACCTGC	2 cut(s)	358, 568
BglI	GCCNNNNNGGC	2 cut(s)	171, 242
Bme1390I	CCNGG	3 cut(s)	353, 434, 673
Bme18I	GGWCC	1 cut(s)	675
BmgBI	CACGTC	2 cut(s)	241, 283
BmgT120I	GGNCC	1 cut(s)	675
BmiI	GGNNCC	4 cut(s)	175, 181, 190, 676
BmrFI	CCNGG	3 cut(s)	353, 434, 673
BmsI	GCATC	2 cut(s)	59, 459
BmtI	GCTAGC	1 cut(s)	236
BpmI	CTGGAG	3 cut(s)	374, 566, 731
BpuEI	CTTGAG	1 cut(s)	712
BpuMI	CCSGG	1 cut(s)	673
BsaHI	GRCGYC	2 cut(s)	189, 441
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse118I	RCCGGY	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	353, 434
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	3 cut(s)	50, 126, 429
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseRI	GAGGAG	3 cut(s)	55, 100, 728
BseXI	GCAGC	4 cut(s)	387, 415, 565, 718
BsgI	GTGCAG	1 cut(s)	602
Bsh1236I	CGCG	2 cut(s)	82, 230
Bsh1285I	CGRYCG	1 cut(s)	525
BshNI	GGYRCC	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	533
BsiSI	CCGG	3 cut(s)	171, 177, 672
BslI	CCNNNNNNNGG	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp13I	TCCGGA	1 cut(s)	176
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	6 cut(s)	179, 291, 414, 468, 522, 628
BspEI	TCCGGA	1 cut(s)	176
BspFNI	CGCG	2 cut(s)	82, 230
BspLI	GGNNCC	4 cut(s)	175, 181, 190, 676
BspMAI	CTGCAG	1 cut(s)	405
BspMI	ACCTGC	2 cut(s)	358, 568
BspOI	GCTAGC	1 cut(s)	236
BspPI	GGATC	3 cut(s)	174, 187, 623
BspT107I	GGYRCC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	6 cut(s)	179, 291, 414, 468, 522, 628
BssNI	GRCGYC	2 cut(s)	189, 441
Bst2UI	CCWGG	2 cut(s)	353, 434
Bst4CI	ACNGT	1 cut(s)	655
BstACI	GRCGYC	2 cut(s)	189, 441
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	5 cut(s)	163, 193, 217, 234, 311
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	3 cut(s)	50, 126, 429
BstFNI	CGCG	2 cut(s)	82, 230
BstH2I	RGCGCY	2 cut(s)	192, 401
BstHHI	GCGC	5 cut(s)	191, 232, 400, 450, 565
BstKTI	GATC	6 cut(s)	182, 294, 417, 471, 525, 631
BstMBI	GATC	6 cut(s)	179, 291, 414, 468, 522, 628
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	9 cut(s)	171, 209, 221, 242, 370, 406, 550, 562, 569
BstNI	CCWGG	2 cut(s)	353, 434
BstSCI	CCNGG	3 cut(s)	351, 432, 671
BstSFI	CTRYAG	1 cut(s)	401
BstUI	CGCG	2 cut(s)	82, 230
BstV1I	GCAGC	4 cut(s)	387, 415, 565, 718
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	179
BtgZI	GCGATG	1 cut(s)	367
BtrI	CACGTC	2 cut(s)	241, 283
BtsCI	GGATG	3 cut(s)	50, 126, 429
BtsIMutI	CAGTG	1 cut(s)	660
BveI	ACCTGC	2 cut(s)	358, 568
Cac8I	GCNNGC	5 cut(s)	163, 193, 217, 234, 311
CaiI	CAGNNNCTG	2 cut(s)	373, 589
CfoI	GCGC	5 cut(s)	191, 232, 400, 450, 565
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	675
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	1 cut(s)	196
CviQI	GTAC	1 cut(s)	493
DinI	GGCGCC	1 cut(s)	190
DpnI	GATC	6 cut(s)	181, 293, 416, 470, 524, 630
DpnII	GATC	6 cut(s)	179, 291, 414, 468, 522, 628
EciI	GGCGGA	4 cut(s)	58, 133, 196, 740
Ecl136II	GAGCTC	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	675
Eco53kI	GAGCTC	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	531
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	351, 432
EcoT38I	GRGCYC	1 cut(s)	533
EgeI	GGCGCC	1 cut(s)	190
EheI	GGCGCC	1 cut(s)	190
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	197, 663, 760
FatI	CATG	1 cut(s)	195
FauI	CCCGC	4 cut(s)	87, 170, 200, 637
FokI	GGATG	3 cut(s)	37, 113, 416
FriOI	GRGCYC	1 cut(s)	533
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	5 cut(s)	190, 231, 399, 449, 564
GsuI	CTGGAG	3 cut(s)	374, 566, 731
HaeII	RGCGCY	2 cut(s)	192, 401
HapII	CCGG	3 cut(s)	171, 177, 672
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	5 cut(s)	191, 232, 400, 450, 565
Hin1I	GRCGYC	2 cut(s)	189, 441
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	5 cut(s)	189, 230, 398, 448, 563
HinP1I	GCGC	5 cut(s)	189, 230, 398, 448, 563
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	1 cut(s)	548
HpaII	CCGG	3 cut(s)	171, 177, 672
HphI	GGTGA	4 cut(s)	67, 148, 550, 752
Hpy166II	GTNNAC	3 cut(s)	439, 493, 651
Hpy188I	TCNGA	1 cut(s)	633
Hpy188III	TCNNGA	5 cut(s)	177, 295, 424, 472, 526
Hpy8I	GTNNAC	3 cut(s)	439, 493, 651
Hpy99I	CGWCG	4 cut(s)	242, 284, 319, 397
HpyAV	CCTTC	4 cut(s)	109, 115, 127, 469
HpyCH4III	ACNGT	1 cut(s)	655
HpyCH4IV	ACGT	2 cut(s)	240, 282
HpyCH4V	TGCA	2 cut(s)	403, 583
HpyF10VI	GCNNNNNNNGC	9 cut(s)	171, 209, 221, 242, 370, 406, 550, 562, 569
HpySE526I	ACGT	2 cut(s)	240, 282
Hsp92I	GRCGYC	2 cut(s)	189, 441
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	5 cut(s)	189, 230, 398, 448, 563
KasI	GGCGCC	1 cut(s)	188
Kpn2I	TCCGGA	1 cut(s)	176
Kzo9I	GATC	6 cut(s)	179, 291, 414, 468, 522, 628
LmnI	GCTCC	2 cut(s)	179, 727
Lsp1109I	GCAGC	4 cut(s)	387, 415, 565, 718
LweI	GCATC	2 cut(s)	59, 459
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	2 cut(s)	240, 282
MaeIII	GTNAC	1 cut(s)	740
MalI	GATC	6 cut(s)	181, 293, 416, 470, 524, 630
MboI	GATC	6 cut(s)	179, 291, 414, 468, 522, 628
MboII	GAAGA	4 cut(s)	322, 370, 613, 712
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	1 cut(s)	754
Mly113I	GGCGCC	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	1 cut(s)	37
MroI	TCCGGA	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	479
MseI	TTAA	2 cut(s)	615, 747
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	276, 709
MspI	CCGG	3 cut(s)	171, 177, 672
MspR9I	CCNGG	3 cut(s)	353, 434, 673
MvaI	CCWGG	2 cut(s)	353, 434
MvnI	CGCG	2 cut(s)	82, 230
MwoI	GCNNNNNNNGC	9 cut(s)	171, 209, 221, 242, 370, 406, 550, 562, 569
NarI	GGCGCC	1 cut(s)	189
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	6 cut(s)	179, 291, 414, 468, 522, 628
NheI	GCTAGC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	4 cut(s)	175, 181, 190, 676
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	740
PaqCI	CACCTGC	2 cut(s)	358, 568
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	479
Ple19I	CGATCG	1 cut(s)	525
PleI	GAGTC	1 cut(s)	556
PluTI	GGCGCC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	556
PsiI	TTATAA	1 cut(s)	760
Psp124BI	GAGCTC	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	351, 432
PspGI	CCWGG	2 cut(s)	351, 432
PspN4I	GGNNCC	4 cut(s)	175, 181, 190, 676
PspPI	GGNCC	1 cut(s)	675
PstI	CTGCAG	1 cut(s)	405
PstNI	CAGNNNCTG	2 cut(s)	373, 589
PsuI	RGATCY	1 cut(s)	179
PvuI	CGATCG	1 cut(s)	525
PvuII	CAGCTG	1 cut(s)	709
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	615, 747
Sau3AI	GATC	6 cut(s)	179, 291, 414, 468, 522, 628
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	3 cut(s)	353, 434, 673
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	2 cut(s)	59, 459
SfcI	CTRYAG	1 cut(s)	401
SfoI	GGCGCC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	691
SmoI	CTYRAG	1 cut(s)	691
Sse9I	AATT	1 cut(s)	754
SspDI	GGCGCC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	233
SstI	GAGCTC	1 cut(s)	533
StyD4I	CCNGG	3 cut(s)	351, 432, 671
TaaI	ACNGT	1 cut(s)	655
TaiI	ACGT	2 cut(s)	243, 285
TaqI	TCGA	7 cut(s)	251, 264, 294, 324, 348, 453, 483
TasI	AATT	1 cut(s)	754
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	7 cut(s)	168, 212, 215, 279, 367, 409, 725
Tru1I	TTAA	2 cut(s)	615, 747
Tru9I	TTAA	2 cut(s)	615, 747
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	5 cut(s)	5, 400, 403, 553, 706
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	2 cut(s)	212, 322
TspGWI	ACGGA	3 cut(s)	521, 527, 635
TspRI	CASTG	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	675
XagI	CCTNNNNNAGG	1 cut(s)	461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	479
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.