Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Reverse (-)

6573792 .. 6576250

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAACGGCTAAAACCTGGAAGATTGCGAGGGAAATCGGAGACGCCGTGATCAAGGCGTCGAGAAACCCTAACCGGAGATGGTACGGACCTCACATGGCCGCAGCAGTTAGAGCAATCTCCGAACGTATTCCTTTGGTCGATTTCGTACTTGAGATTCGAGACGCTCGTATTCCGTTGTCTTCTGAGTATGAGTTGTTGAGAAAGTTTTCGCCTTTACCGTCAAAACGAATCATTGTGTTGAACAAAATGGAACTCGCGGATCCTTTGGAGTTGAAGAAGTGTATAGATTACTTTGAAGAGAGAAACTATCTTTCGTATGCAGTGAATTCACATAACAAAGATTGTGTCAAGCAATTACTGAACTTTTTGCAGAGTCAAGTTAGGGAATTGCATAAGGCTGGTCATTCTGGTCATACTACTACTATGATGCTTCTTGGGATTCCTAATGTAGGAAAGTCCGCTCTTTCAAATTCTCTTCATCATATCGGAAGGATTAGTGCTGCAGAGAAAGGTAAGCTAAAGCATACAACAGTTAGCTCCCAGCCTGGAGATACTAAAGACATTATGAGCTTGAAGATCGGTAGCCATCCCAATGTCTATGTACTGGACACGCCTGGAATTTTTCCTCCTAATCTGTATGACGCTGAGATCTGCGCAAAGTTAGCGTTAACAGGAGCTATCCCGGATGATATAGTTGGGGAACTCAAACTAGCACGGTTATTTCTGACGATACTAAATTCGAGCCATGAATACAAGAAATGGGCTAAACTGTGCAAATCTCAGGATTTAACAGAAAGTTTATCCGATGAGAGCTCCAAGTCTGATGCCAAACATAAGAGGCAATACGCAACAGATCATACACAGGATTTTATAGTGTACGACGTTCGAAGAGTTCTGTACGAGACAATTTCAGCATTTGACGGAAACTTAGAAGACGAAATCAGCATGGGAAATCTTATAGAGACGCAATTCGCTGCGTTAAGATCGGTTCTTAGGGTTCCAGAAGAAGCAAGTGAGTTTGCTGATCTAAGAGTTGCTTCTAAGATATTGAATCTCTATAGAACTGGTAGACTTGGACATTACACTTTAGAACATGTCTCTGCTCTAGCCAAATCTTACACATACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

377

Amino Acids

42.42

Weight (kDa)

8.79

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsgA_GTPase	PF03193	77 - 208	1e-06	RsgA GTPase
MMR_HSR1	PF01926	143 - 210	3.5e-09	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	658
AccBSI	CCGCTC	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	1072
AccII	CGCG	1 cut(s)	260
AciI	CCGC	3 cut(s)	102, 260, 462
AclWI	GGATC	2 cut(s)	257, 270
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	4 cut(s)	328, 472, 621, 739
AcyI	GRCGYC	2 cut(s)	45, 59
AfaI	GTAC	5 cut(s)	86, 150, 606, 881, 902
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflIII	ACRYGT	1 cut(s)	1096
AgsI	TTSAA	6 cut(s)	244, 277, 299, 471, 577, 1054
AjnI	CCWGG	3 cut(s)	17, 547, 616
AluBI	AGCT	5 cut(s)	520, 540, 573, 680, 816
AluI	AGCT	5 cut(s)	520, 540, 573, 680, 816
Alw21I	GWGCWC	1 cut(s)	818
Alw26I	GTCTC	5 cut(s)	36, 156, 899, 959, 1105
AlwI	GGATC	2 cut(s)	257, 270
AoxI	GGCC	1 cut(s)	99
ApeKI	GCWGC	3 cut(s)	104, 503, 977
ApoI	RAATTY	4 cut(s)	328, 472, 621, 739
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
Asp700I	GAANNNNTTC	2 cut(s)	129, 208
AspLEI	GCGC	1 cut(s)	659
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	686
AsuII	TTCGAA	1 cut(s)	889
AvaII	GGWCC	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	818
BbsI	GAAGAC	2 cut(s)	174, 942
Bbv12I	GWGCWC	1 cut(s)	818
BbvI	GCAGC	3 cut(s)	116, 490, 964
BccI	CCATC	2 cut(s)	75, 597
BceAI	ACGGC	2 cut(s)	24, 32
BciT130I	CCWGG	3 cut(s)	19, 549, 618
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	5 cut(s)	36, 156, 899, 959, 1105
BfaI	CTAG	2 cut(s)	713, 1109
BfmI	CTRYAG	2 cut(s)	504, 1060
BglII	AGATCT	1 cut(s)	651
BisI	GCNGC	4 cut(s)	102, 105, 504, 978
BlsI	GCNGC	4 cut(s)	103, 106, 505, 979
Bme1390I	CCNGG	4 cut(s)	19, 549, 618, 686
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	264, 1002
BmrFI	CCNGG	4 cut(s)	19, 549, 618, 686
BmsI	GCATC	2 cut(s)	420, 817
BpiI	GAAGAC	2 cut(s)	174, 942
BpmI	CTGGAG	1 cut(s)	570
Bpu14I	TTCGAA	1 cut(s)	889
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	686
BsaHI	GRCGYC	2 cut(s)	45, 59
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	2 cut(s)	612, 1072
BseBI	CCWGG	3 cut(s)	19, 549, 618
BseGI	GGATG	2 cut(s)	589, 694
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	3 cut(s)	177, 639, 797
BseNI	ACTGG	2 cut(s)	612, 1072
BseXI	GCAGC	3 cut(s)	116, 490, 964
BseYI	CCCAGC	1 cut(s)	543
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	818
BsiSI	CCGG	2 cut(s)	76, 686
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	5 cut(s)	36, 156, 899, 959, 1105
BsmBI	CGTCTC	3 cut(s)	36, 156, 959
BsnI	GGCC	1 cut(s)	101
Bsp119I	TTCGAA	1 cut(s)	889
Bsp1286I	GDGCHC	1 cut(s)	818
Bsp143I	GATC	7 cut(s)	51, 262, 579, 651, 856, 986, 1027
BspACI	CCGC	3 cut(s)	102, 260, 462
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	3 cut(s)	178, 640, 796
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	264, 1002
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	2 cut(s)	257, 270
BspT104I	TTCGAA	1 cut(s)	889
BsrBI	CCGCTC	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	612, 1072
BssMI	GATC	7 cut(s)	51, 262, 579, 651, 856, 986, 1027
BssNI	GRCGYC	2 cut(s)	45, 59
Bst2UI	CCWGG	3 cut(s)	19, 549, 618
Bst4CI	ACNGT	4 cut(s)	222, 535, 720, 774
Bst6I	CTCTTC	3 cut(s)	294, 483, 886
BstACI	GRCGYC	2 cut(s)	45, 59
BstBI	TTCGAA	1 cut(s)	889
BstDEI	CTNAG	7 cut(s)	186, 648, 783, 931, 995, 1031, 1044
BstENI	CCTNNNNNAGG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	589, 694
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	7 cut(s)	54, 265, 582, 654, 859, 989, 1030
BstMAI	GTCTC	5 cut(s)	36, 156, 899, 959, 1105
BstMBI	GATC	7 cut(s)	51, 262, 579, 651, 856, 986, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 665
BstNI	CCWGG	3 cut(s)	19, 549, 618
BstNSI	RCATGY	1 cut(s)	1100
BstSCI	CCNGG	4 cut(s)	17, 547, 616, 684
BstSFI	CTRYAG	2 cut(s)	504, 1060
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	116, 490, 964
BstV2I	GAAGAC	2 cut(s)	174, 942
BstX2I	RGATCY	2 cut(s)	262, 651
BstYI	RGATCY	2 cut(s)	262, 651
BsuRI	GGCC	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	589, 694
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
CfoI	GCGC	1 cut(s)	659
Cfr13I	GGNCC	1 cut(s)	89
CseI	GACGC	5 cut(s)	48, 53, 173, 653, 976
Csp6I	GTAC	5 cut(s)	85, 149, 605, 880, 901
CviAII	CATG	4 cut(s)	97, 749, 949, 1097
CviQI	GTAC	5 cut(s)	85, 149, 605, 880, 901
DdeI	CTNAG	7 cut(s)	186, 648, 783, 931, 995, 1031, 1044
DpnI	GATC	7 cut(s)	53, 264, 581, 653, 858, 988, 1029
DpnII	GATC	7 cut(s)	51, 262, 579, 651, 856, 986, 1027
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	3 cut(s)	294, 483, 886
EarI	CTCTTC	3 cut(s)	294, 483, 886
Ecl136II	GAGCTC	1 cut(s)	816
Eco24I	GRGCYC	1 cut(s)	818
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	816
EcoICRI	GAGCTC	1 cut(s)	816
EcoNI	CCTNNNNNAGG	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	328
EcoRII	CCWGG	3 cut(s)	17, 547, 616
EcoT38I	GRGCYC	1 cut(s)	818
Esp3I	CGTCTC	3 cut(s)	36, 156, 959
FaeI	CATG	4 cut(s)	100, 752, 952, 1100
FalI	AAGNNNNNCTT	2 cut(s)	1024, 1056
FatI	CATG	4 cut(s)	96, 748, 948, 1096
FbaI	TGATCA	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	1072
Fnu4HI	GCNGC	4 cut(s)	102, 105, 504, 978
FokI	GGATG	2 cut(s)	576, 701
FriOI	GRGCYC	1 cut(s)	818
Fsp4HI	GCNGC	4 cut(s)	102, 105, 504, 978
FspBI	CTAG	2 cut(s)	713, 1109
FspI	TGCGCA	1 cut(s)	658
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	4 cut(s)	102, 105, 504, 978
GsaI	CCCAGC	1 cut(s)	547
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	2 cut(s)	76, 686
HgaI	GACGC	5 cut(s)	48, 53, 173, 653, 976
HhaI	GCGC	1 cut(s)	659
Hin1I	GRCGYC	2 cut(s)	45, 59
Hin1II	CATG	4 cut(s)	100, 752, 952, 1100
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HinfI	GANTC	5 cut(s)	157, 231, 376, 442, 1054
HpaI	GTTAAC	1 cut(s)	672
HpaII	CCGG	2 cut(s)	76, 686
Hpy166II	GTNNAC	3 cut(s)	672, 880, 1073
Hpy188I	TCNGA	7 cut(s)	41, 124, 187, 491, 729, 808, 826
Hpy188III	TCNNGA	4 cut(s)	63, 161, 785, 1004
Hpy8I	GTNNAC	3 cut(s)	672, 880, 1073
Hpy99I	CGWCG	2 cut(s)	64, 887
HpyAV	CCTTC	1 cut(s)	486
HpyCH4III	ACNGT	4 cut(s)	222, 535, 720, 774
HpyCH4IV	ACGT	2 cut(s)	127, 885
HpyCH4V	TGCA	5 cut(s)	323, 373, 394, 506, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 665
HpyF3I	CTNAG	7 cut(s)	186, 648, 783, 931, 995, 1031, 1044
HpySE526I	ACGT	2 cut(s)	127, 885
Hsp92I	GRCGYC	2 cut(s)	45, 59
Hsp92II	CATG	4 cut(s)	100, 752, 952, 1100
HspAI	GCGC	1 cut(s)	657
Ksp22I	TGATCA	1 cut(s)	51
KspAI	GTTAAC	1 cut(s)	672
Kzo9I	GATC	7 cut(s)	51, 262, 579, 651, 856, 986, 1027
LmnI	GCTCC	3 cut(s)	545, 677, 821
Lsp1109I	GCAGC	3 cut(s)	116, 490, 964
LweI	GCATC	2 cut(s)	420, 817
MaeI	CTAG	2 cut(s)	713, 1109
MaeII	ACGT	2 cut(s)	127, 885
MalI	GATC	7 cut(s)	53, 264, 581, 653, 858, 988, 1029
MbiI	CCGCTC	1 cut(s)	464
MboI	GATC	7 cut(s)	51, 262, 579, 651, 856, 986, 1027
MboII	GAAGA	9 cut(s)	34, 174, 289, 311, 470, 589, 903, 947, 1019
MflI	RGATCY	2 cut(s)	262, 651
MhlI	GDGCHC	1 cut(s)	818
MluCI	AATT	8 cut(s)	328, 356, 389, 472, 621, 739, 909, 971
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	4 cut(s)	24, 102, 639, 834
MroXI	GAANNNNTTC	2 cut(s)	129, 208
MseI	TTAA	4 cut(s)	671, 791, 983, 1132
MslI	CAYNNNNRTG	1 cut(s)	594
MspI	CCGG	2 cut(s)	76, 686
MspR9I	CCNGG	4 cut(s)	19, 549, 618, 686
MvaI	CCWGG	3 cut(s)	19, 549, 618
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	113, 665
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	7 cut(s)	51, 262, 579, 651, 856, 986, 1027
NlaIII	CATG	4 cut(s)	100, 752, 952, 1100
NlaIV	GGNNCC	2 cut(s)	264, 1002
NsbI	TGCGCA	1 cut(s)	658
NspI	RCATGY	1 cut(s)	1100
NspV	TTCGAA	1 cut(s)	889
PciI	ACATGT	1 cut(s)	1096
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 166, 218
PdmI	GAANNNNTTC	2 cut(s)	129, 208
PfeI	GAWTC	4 cut(s)	157, 231, 442, 1054
PfoI	TCCNGGA	1 cut(s)	684
PkrI	GCNGC	4 cut(s)	103, 106, 505, 979
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PscI	ACATGT	1 cut(s)	1096
Psp124BI	GAGCTC	1 cut(s)	818
Psp6I	CCWGG	3 cut(s)	17, 547, 616
PspFI	CCCAGC	1 cut(s)	543
PspGI	CCWGG	3 cut(s)	17, 547, 616
PspN4I	GGNNCC	2 cut(s)	264, 1002
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	262, 651
RsaI	GTAC	5 cut(s)	86, 150, 606, 881, 902
RsaNI	GTAC	5 cut(s)	85, 149, 605, 880, 901
RseI	CAYNNNNRTG	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	818
SaqAI	TTAA	4 cut(s)	671, 791, 983, 1132
SatI	GCNGC	4 cut(s)	102, 105, 504, 978
Sau3AI	GATC	7 cut(s)	51, 262, 579, 651, 856, 986, 1027
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	4 cut(s)	19, 549, 618, 686
SduI	GDGCHC	1 cut(s)	818
SfaNI	GCATC	2 cut(s)	420, 817
SfcI	CTRYAG	2 cut(s)	504, 1060
SfuI	TTCGAA	1 cut(s)	889
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	8 cut(s)	328, 356, 389, 472, 621, 739, 909, 971
SsiI	CCGC	3 cut(s)	102, 260, 462
SspMI	CTAG	2 cut(s)	713, 1109
SstI	GAGCTC	1 cut(s)	818
StyD4I	CCNGG	4 cut(s)	17, 547, 616, 684
TaaI	ACNGT	4 cut(s)	222, 535, 720, 774
TaiI	ACGT	2 cut(s)	130, 888
TaqI	TCGA	5 cut(s)	62, 141, 160, 743, 889
TasI	AATT	8 cut(s)	328, 356, 389, 472, 621, 739, 909, 971
TatI	WGTACW	1 cut(s)	604
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	4 cut(s)	157, 231, 442, 1054
Tru1I	TTAA	4 cut(s)	671, 791, 983, 1132
Tru9I	TTAA	4 cut(s)	671, 791, 983, 1132
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	3 cut(s)	104, 503, 977
TspDTI	ATGAA	2 cut(s)	470, 765
TspGWI	ACGGA	3 cut(s)	102, 165, 939
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	450
XapI	RAATTY	4 cut(s)	328, 472, 621, 739
XceI	RCATGY	1 cut(s)	1100
XmiI	GTMKAC	1 cut(s)	1072
XmnI	GAANNNNTTC	2 cut(s)	129, 208
XspI	CTAG	2 cut(s)	713, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.