Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Reverse (-)

28048720 .. 28051498

Gene Structure 2779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1234100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTGCTGCTTCTTGCGACATTGCCGAACGGATCCCATTGGTCGATCTCGTTCTCCAAGTCAGAGACGCAAGGATTCCATTGTCGTCGGAGTTTGACCAACTAAGGAACCATACACCACTCTTAAAGAGAATAATACTGTTCAATAAGATGGACCTTGCGAACCCTTCTCAACTGAAGTTGTTGAACTTTTTGCAAGCTCAAGTAAGAAAATTGAAGAAAGCTGATCACTGCCATACCACAACAATATTGCTAGTTGGAATTCCTAATGTTGGAAAGTCAGCCGGAAAGTTGAAGTGTGCTACAGTGAGTCCACATCCTGGTGGGACAAAAAATATAAGCAGCTTGAAGCTGCTTACGGCATTCAGTATTTCATTACAGATTGCAAGCCACCCCAATATTTACGTGTTGGACAGCCCATGCGTTTTGCCTCCACATATTTTGGACGATGATGTCTGCACCAAGCTAGCCTTGACAGGAACGATTCAAGATTGTTTTGCTGGGGAGAAAGAAATGGCTCTGTATTTTCTGGCTATCTTGAACAGGAGTGACGAATACAAGAAATGGCCAAAGTTCAACAACGAGAATGAGGGATCACTTGCAAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

204

Amino Acids

22.41

Weight (kDa)

8.88

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	320
AclWI	GGATC	3 cut(s)	28, 41, 601
AcoI	YGGCCR	1 cut(s)	566
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	272, 320
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	8 cut(s)	145, 187, 217, 295, 349, 488, 541, 577
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	5 cut(s)	200, 224, 345, 352, 466
AluI	AGCT	5 cut(s)	200, 224, 345, 352, 466
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	3 cut(s)	28, 41, 601
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	4 cut(s)	5, 8, 342, 352
ApoI	RAATTY	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	154
AsuNHI	GCTAGC	1 cut(s)	466
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	568
BamHI	GGATCC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	339, 354
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	321
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	254, 467
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	4 cut(s)	6, 9, 343, 353
BlsI	GCNGC	4 cut(s)	7, 10, 344, 354
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	35, 110
BmrFI	CCNGG	1 cut(s)	321
BmtI	GCTAGC	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 320
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	272, 320
BseMI	GCAATG	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	339, 354
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	442
BshFI	GGCC	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	272, 320
BsmAI	GTCTC	1 cut(s)	60
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	568
Bsp143I	GATC	4 cut(s)	33, 46, 226, 593
BspANI	GGCC	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	35, 110
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	3 cut(s)	28, 41, 601
BsrDI	GCAATG	1 cut(s)	21
BssMI	GATC	4 cut(s)	33, 46, 226, 593
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	141, 307
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	3 cut(s)	198, 388, 468
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	4 cut(s)	36, 49, 229, 596
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	4 cut(s)	33, 46, 226, 593
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	339, 354
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	229, 312
Cac8I	GCNNGC	3 cut(s)	198, 388, 468
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	77
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	1 cut(s)	420
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	4 cut(s)	35, 48, 228, 595
DpnII	GATC	4 cut(s)	33, 46, 226, 593
DrdI	GACNNNNNNGTC	1 cut(s)	452
DseDI	GACNNNNNNGTC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	1 cut(s)	423
FaiI	YATR	5 cut(s)	114, 237, 338, 421, 438
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	1 cut(s)	419
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	6, 9, 343, 353
FokI	GGATG	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	6, 9, 343, 353
FspBI	CTAG	2 cut(s)	254, 467
GluI	GCNGC	4 cut(s)	6, 9, 343, 353
GsaI	CCCAGC	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	423
HinfI	GANTC	3 cut(s)	76, 310, 484
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	65, 91
Hpy188III	TCNNGA	2 cut(s)	488, 538
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	2 cut(s)	141, 307
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	4 cut(s)	196, 386, 459, 602
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	33, 46, 226, 593
LpnPI	CCDG	7 cut(s)	298, 306, 333, 462, 486, 515, 529
Lsp1109I	GCAGC	2 cut(s)	339, 354
MaeI	CTAG	2 cut(s)	254, 467
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	4 cut(s)	35, 48, 228, 595
MboI	GATC	4 cut(s)	33, 46, 226, 593
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	568
MluCI	AATT	2 cut(s)	212, 261
MluNI	TGGCCA	1 cut(s)	568
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	4 cut(s)	69, 238, 253, 390
MnlI	CCTC	2 cut(s)	441, 583
Mox20I	TGGCCA	1 cut(s)	568
MscI	TGGCCA	1 cut(s)	568
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	568
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	321
NdeII	GATC	4 cut(s)	33, 46, 226, 593
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	1 cut(s)	423
NlaIV	GGNNCC	2 cut(s)	35, 110
NmuCI	GTSAC	1 cut(s)	548
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	76, 484
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	7, 10, 344, 354
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	2 cut(s)	35, 110
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	33
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	4 cut(s)	6, 9, 343, 353
Sau3AI	GATC	4 cut(s)	33, 46, 226, 593
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	7 cut(s)	159, 202, 226, 347, 354, 408, 468
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	212, 261
SspI	AATATT	2 cut(s)	249, 400
SspMI	CTAG	2 cut(s)	254, 467
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	141, 307
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	212, 261
TfiI	GAWTC	2 cut(s)	76, 484
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	236, 312
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	4 cut(s)	5, 8, 342, 352
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	236, 312
Van91I	CCANNNNNTGG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	261
XspI	CTAG	2 cut(s)	254, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.