Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Forward (+)

35521259 .. 35527123

Gene Structure 5865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCAACGGCTAGTTTAGCGAGACGAATAGGCATGGCTATTGTAAAAGCCACCAACAACACAAGCTGTGGGAAAGGCTGGTTCAGCCCTCACATGGCTGCTGCTTCTCGTGCCATCGCTGAACGTATCCCATTGGTTGATCTCGTTCTTGAAGTCAGAGACGCAAGGATTCCATTGTCATCAGCGTACAAGCAATTGGAGAACTACACATCCTCCTCCAAGCGAATCATAGTATTGAACAAGGTGGACCTTGCGAATCGTTCCCAGTTGAAGGAATGGATGAAGTATTTTGAGCAAAATAATTGCATTTCATATGGAGTCAATGCCCATAATAAAGAGAGCATTAAGCAGTTTTTGAACTTTTTGCAAGCTCGTGTCAGAGAATTGAATAACAATGATAATTCTAGTTATACTGCAACGATATTGCTACTTGGAATTCCTAATGTTGGTAAGTCAGCCCTTGCCAACTCCTTACATCGAATTGGGAGGATTAGTGCAGCAGGTACCACTTTAAATCATATTTTTAAGCTTCTTTTATTCTTGAGACTTGGATTATGTGGGGGAATATCCTCCTCTGTTATGTACTCTAATTCATTCCAGAAAATTGGAATAGAAAAGGGAAAGTTGAAGCATGCTACAGTGAGTCCACAGCCTGGTGAAACAACAGATATAAGCAGTTTGAAGATTGGAAGTCATCCCAATATTTATGTTTTGGACACACCAGGTGTTTTGCCTCCAGAGATTCATGATGTAGAGGTCTGCACCAAATTAGCGTTGACAGGAACCATTATAGATTGTTTTGCTGGGGAAAAAGAACTAGCTCAATGTTTTCTGGCTATCTTGAACAGAAGCGACGAATACAAGAAATGGGCAAATTTGTCCAACAGTGAGAATGGTAGAACATTGATAGACCACAGTATAGAATGCTCAAATAGCTCGGAAGACATCAAACGGAAAAGAAGATACTCTGCAGATCACACACAGGATTTCATAGTGCAAGATGTTCGTCAGATTCTCTTCAAAACCATATCATCTTTCAATGGTGACATGGAGGATGAAATGCTTATTGAGGAACAGATCAAGGCCCTGCAAGGAGTTTTTCAGTTTCCTCTGGAATCCAAAAAGAACACTCAATATAAAGCCGAATCGAAGTTATTGAATCTTTTTCGCACTGGGAGGCTTGGACATTATACCTTAGATTCTATACCAAGAAACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

406

Amino Acids

45.33

Weight (kDa)

9.15

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	491
Acc65I	GGTACC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	653
AcsI	RAATTY	2 cut(s)	435, 874
AdeI	CACNNNGTG	1 cut(s)	725
AfaI	GTAC	3 cut(s)	188, 505, 584
AfiI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 653
AjnI	CCWGG	2 cut(s)	652, 721
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	5 cut(s)	66, 371, 529, 821, 936
AluI	AGCT	5 cut(s)	66, 371, 529, 821, 936
Alw26I	GTCTC	3 cut(s)	16, 153, 538
AoxI	GGCC	1 cut(s)	1083
ApeKI	GCWGC	3 cut(s)	98, 101, 497
ApoI	RAATTY	2 cut(s)	435, 874
Asp718I	GGTACC	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	247, 1084
AsuHPI	GGTGA	2 cut(s)	668, 1055
AvaII	GGWCC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	503
BauI	CACGAG	2 cut(s)	108, 372
BbsI	GAAGAC	1 cut(s)	948
BbvI	GCAGC	3 cut(s)	85, 88, 509
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	986, 1020
BciT130I	CCWGG	2 cut(s)	654, 723
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	3 cut(s)	16, 153, 538
BfaI	CTAG	4 cut(s)	12, 405, 818, 1219
BfmI	CTRYAG	2 cut(s)	636, 969
BfuAI	ACCTGC	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	137
BisI	GCNGC	3 cut(s)	99, 102, 498
BlsI	GCNGC	3 cut(s)	100, 103, 499
Bme1390I	CCNGG	2 cut(s)	654, 723
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	247, 1084
BmiI	GGNNCC	2 cut(s)	505, 784
BmrFI	CCNGG	2 cut(s)	654, 723
BmrI	ACTGGG	2 cut(s)	259, 1182
BmuI	ACTGGG	2 cut(s)	259, 1182
BpiI	GAAGAC	1 cut(s)	948
BpmI	CTGGAG	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	562
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 478, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 653
Bse1I	ACTGG	2 cut(s)	265, 1177
BseBI	CCWGG	2 cut(s)	654, 723
BseGI	GGATG	4 cut(s)	209, 285, 694, 1060
BseLI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 653
BseNI	ACTGG	2 cut(s)	265, 1177
BseRI	GAGGAG	2 cut(s)	205, 562
BseXI	GCAGC	3 cut(s)	85, 88, 509
BseYI	CCCAGC	1 cut(s)	803
BsgI	GTGCAG	2 cut(s)	516, 745
BshFI	GGCC	1 cut(s)	1085
BshNI	GGYRCC	1 cut(s)	503
BslI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 653
BsmAI	GTCTC	3 cut(s)	16, 153, 538
BsmBI	CGTCTC	2 cut(s)	16, 153
BsmI	GAATGC	1 cut(s)	929
BsnI	GGCC	1 cut(s)	1085
Bsp143I	GATC	3 cut(s)	139, 973, 1077
BspANI	GGCC	1 cut(s)	1085
BspHI	TCATGA	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	505, 784
BspMAI	CTGCAG	1 cut(s)	973
BspMI	ACCTGC	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	265, 1177
BssMI	GATC	3 cut(s)	139, 973, 1077
BssSI	CACGAG	2 cut(s)	108, 372
Bst2BI	CACGAG	2 cut(s)	108, 372
Bst2UI	CCWGG	2 cut(s)	654, 723
Bst4CI	ACNGT	3 cut(s)	640, 887, 917
Bst6I	CTCTTC	1 cut(s)	1022
BstC8I	GCNNGC	2 cut(s)	369, 633
BstDEI	CTNAG	1 cut(s)	1195
BstF5I	GGATG	4 cut(s)	209, 285, 694, 1060
BstKTI	GATC	3 cut(s)	142, 976, 1080
BstMAI	GTCTC	3 cut(s)	16, 153, 538
BstMBI	GATC	3 cut(s)	139, 973, 1077
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 84, 110, 933
BstNI	CCWGG	2 cut(s)	654, 723
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	2 cut(s)	652, 721
BstSFI	CTRYAG	2 cut(s)	636, 969
BstV1I	GCAGC	3 cut(s)	85, 88, 509
BstV2I	GAAGAC	1 cut(s)	948
BstXI	CCANNNNNNTGG	1 cut(s)	605
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	1085
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	209, 285, 694, 1060
BtsIMutI	CAGTG	3 cut(s)	645, 892, 1170
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	2 cut(s)	369, 633
CciI	TCATGA	1 cut(s)	745
Cfr13I	GGNCC	2 cut(s)	247, 1084
CseI	GACGC	1 cut(s)	170
CsiI	ACCWGGT	1 cut(s)	721
Csp6I	GTAC	3 cut(s)	187, 504, 583
CviAII	CATG	5 cut(s)	34, 94, 632, 746, 1048
CviQI	GTAC	3 cut(s)	187, 504, 583
DdeI	CTNAG	1 cut(s)	1195
DpnI	GATC	3 cut(s)	141, 975, 1079
DpnII	GATC	3 cut(s)	139, 973, 1077
DraI	TTTAAA	1 cut(s)	513
DraIII	CACNNNGTG	1 cut(s)	725
Eam1104I	CTCTTC	1 cut(s)	1022
EarI	CTCTTC	1 cut(s)	1022
Eco47I	GGWCC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	1084
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	652, 721
Esp3I	CGTCTC	2 cut(s)	16, 153
FaeI	CATG	5 cut(s)	37, 97, 635, 749, 1051
FatI	CATG	5 cut(s)	33, 93, 631, 745, 1047
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	99, 102, 498
FokI	GGATG	4 cut(s)	196, 292, 681, 1067
Fsp4HI	GCNGC	3 cut(s)	99, 102, 498
FspBI	CTAG	4 cut(s)	12, 405, 818, 1219
GluI	GCNGC	3 cut(s)	99, 102, 498
GsaI	CCCAGC	1 cut(s)	807
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	1 cut(s)	1085
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	37, 97, 635, 749, 1051
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HindIII	AAGCTT	1 cut(s)	527
HphI	GGTGA	2 cut(s)	668, 1055
Hpy166II	GTNNAC	3 cut(s)	247, 647, 777
Hpy188I	TCNGA	4 cut(s)	158, 380, 940, 1011
Hpy188III	TCNNGA	7 cut(s)	149, 541, 598, 737, 746, 841, 1112
Hpy8I	GTNNAC	3 cut(s)	247, 647, 777
Hpy99I	CGWCG	1 cut(s)	857
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	3 cut(s)	640, 887, 917
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	8 cut(s)	306, 367, 416, 497, 762, 971, 997, 1090
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 84, 110, 933
HpyF3I	CTNAG	1 cut(s)	1195
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	5 cut(s)	37, 97, 635, 749, 1051
KpnI	GGTACC	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	139, 973, 1077
Lsp1109I	GCAGC	3 cut(s)	85, 88, 509
MabI	ACCWGGT	1 cut(s)	721
MaeI	CTAG	4 cut(s)	12, 405, 818, 1219
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	1043
MalI	GATC	3 cut(s)	141, 975, 1079
MboI	GATC	3 cut(s)	139, 973, 1077
MboII	GAAGA	4 cut(s)	694, 953, 972, 1009
MfeI	CAATTG	1 cut(s)	194
MlyI	GAGTC	2 cut(s)	327, 652
MmeI	TCCRAC	1 cut(s)	906
MseI	TTAA	3 cut(s)	345, 512, 525
MspR9I	CCNGG	2 cut(s)	654, 723
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	929
MvaI	CCWGG	2 cut(s)	654, 723
MwoI	GCNNNNNNNGC	4 cut(s)	17, 84, 110, 933
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	3 cut(s)	139, 973, 1077
NlaIII	CATG	5 cut(s)	37, 97, 635, 749, 1051
NlaIV	GGNNCC	2 cut(s)	505, 784
NmuCI	GTSAC	1 cut(s)	1043
NspI	RCATGY	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	635
PagI	TCATGA	1 cut(s)	745
PctI	GAATGC	1 cut(s)	929
PfeI	GAWTC	9 cut(s)	169, 225, 256, 742, 1012, 1115, 1145, 1159, 1199
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	100, 103, 499
PleI	GAGTC	2 cut(s)	326, 651
PpsI	GAGTC	2 cut(s)	326, 651
Psp6I	CCWGG	2 cut(s)	652, 721
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	2 cut(s)	652, 721
PspN4I	GGNNCC	2 cut(s)	505, 784
PspPI	GGNCC	2 cut(s)	247, 1084
PstI	CTGCAG	1 cut(s)	973
RsaI	GTAC	3 cut(s)	188, 505, 584
RsaNI	GTAC	3 cut(s)	187, 504, 583
SaqAI	TTAA	3 cut(s)	345, 512, 525
SatI	GCNGC	3 cut(s)	99, 102, 498
Sau3AI	GATC	3 cut(s)	139, 973, 1077
Sau96I	GGNCC	2 cut(s)	247, 1084
SchI	GAGTC	2 cut(s)	327, 652
ScrFI	CCNGG	2 cut(s)	654, 723
SexAI	ACCWGGT	1 cut(s)	721
SfcI	CTRYAG	2 cut(s)	636, 969
SinI	GGWCC	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
SphI	GCATGC	1 cut(s)	635
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	4 cut(s)	12, 405, 818, 1219
StyD4I	CCNGG	2 cut(s)	652, 721
TaaI	ACNGT	3 cut(s)	640, 887, 917
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	478, 1148
TatI	WGTACW	1 cut(s)	582
TfiI	GAWTC	9 cut(s)	169, 225, 256, 742, 1012, 1115, 1145, 1159, 1199
Tru1I	TTAA	3 cut(s)	345, 512, 525
Tru9I	TTAA	3 cut(s)	345, 512, 525
TscAI	CASTG	3 cut(s)	645, 892, 1177
TseFI	GTSAC	1 cut(s)	1043
TseI	GCWGC	3 cut(s)	98, 101, 497
Tsp45I	GTSAC	1 cut(s)	1043
TspDTI	ATGAA	6 cut(s)	296, 300, 582, 734, 979, 1071
TspGWI	ACGGA	1 cut(s)	967
TspRI	CASTG	3 cut(s)	645, 892, 1177
Van91I	CCANNNNNTGG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	435, 874
XceI	RCATGY	1 cut(s)	635
XspI	CTAG	4 cut(s)	12, 405, 818, 1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.