Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Forward (+)

33017548 .. 33021358

Gene Structure 3811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG172100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCAACGGCTAGTTTAGCGAGACGAATAGGCATGGCTATTGTAAAAGCCACCAACACCACAAGCTCTGGGAACGGTTGGTTCAGCCCTCACATGGCTGCTGCTTCTCGTGCCATCGCTGAACGTATCCCATTGGTTGATCTCGTTCTTGAAGTCAGAGACGCAAGGATTCCATTGTCATCAGCGTACAAGCAATTGGAGAACTACACATCCTCCTCCAAGCGAATCATAGTAATGAACAAGGTGGACCTTGCGAATCGTTCCCAGTTGAAGGAATGGATGAAGTATTTTGAGCAAAATAATTACATTTCATATGGAGTCAATGCCCATAATAAAGAGAGCATTAAGCAGTTTTTGAACTTTTTGCAAGCTCGTGTCAGAGAATTGAATAACAATGATAATTCTAGTTATACTGCAACGATATTGCTACTTGGAATTCCTAATGTTGGTAAGTCAGCCCTTGCCAACTCCTTACATCGAATTGGGAGGATTAGTGCAGCAGAAAAGGGAAAGTTGAAGCATGCTACAGTGAGTCCACAGCCTGGTGAAACAAAAGATATAAGCAGTTTGAAGATTGGAAGTCATCCCAATATTTATGTTTTGGACACACCAGGTGTTTTGCCTCCAGAGATTCATGATGTAGAGGTCTGCACCAAATTAGTGTTGACAGGAACCATTATAGATTGTTATGCTGGGGATAAAGAACTAGCTCAGTGTTTTCTGGCAATCTTGAACAGAAGCGACGAATACAAGAAATGGGCAAATTTGTCCAACAGTGAGAATGGTAGAACATTGATAGACCACAGTATAGAATGCTCGAAAGACATCAAACGGAAAAGAAGATACTCTGCAGATCACACACAGGATTTCATAGTGCAAGATGTTCGTCAGATTCTCTTCAAAATCATATCATCTTTCAATGGTGACATGGAGGATGAAATGCTTATTGAGGAACAGATCAAGGCCCTGCAAGGAGTTTTTCAGTTTCCTCTGGAATCCAAAAAGAACACTCAATATAAAGCCGAATCGAAGTTATTGAATCTTTTTCGCACTGGGAGGCTTGGACATTATACCTTAGATTCTATACCAAGAAACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

366

Amino Acids

41.13

Weight (kDa)

9.21

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsgA_GTPase	PF03193	71 - 207	1e-06	RsgA GTPase
MMR_HSR1	PF01926	141 - 208	2.7e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AcsI	RAATTY	2 cut(s)	435, 763
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
AjnI	CCWGG	2 cut(s)	541, 610
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	66, 371, 710
AluI	AGCT	3 cut(s)	66, 371, 710
Alw26I	GTCTC	2 cut(s)	16, 153
AoxI	GGCC	1 cut(s)	963
ApeKI	GCWGC	3 cut(s)	98, 101, 497
ApoI	RAATTY	2 cut(s)	435, 763
AspS9I	GGNCC	2 cut(s)	247, 964
AsuHPI	GGTGA	2 cut(s)	557, 935
AvaII	GGWCC	1 cut(s)	247
BauI	CACGAG	2 cut(s)	108, 372
BbvI	GCAGC	3 cut(s)	85, 88, 509
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BciT130I	CCWGG	2 cut(s)	543, 612
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	16, 153
BfaI	CTAG	4 cut(s)	12, 405, 707, 1099
BfmI	CTRYAG	2 cut(s)	525, 849
BfuI	GTATCC	1 cut(s)	137
BisI	GCNGC	3 cut(s)	99, 102, 498
BlsI	GCNGC	3 cut(s)	100, 103, 499
Bme1390I	CCNGG	2 cut(s)	543, 612
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	247, 964
BmiI	GGNNCC	1 cut(s)	673
BmrFI	CCNGG	2 cut(s)	543, 612
BmrI	ACTGGG	2 cut(s)	259, 1062
BmuI	ACTGGG	2 cut(s)	259, 1062
BpmI	CTGGAG	1 cut(s)	609
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 478, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
Bse1I	ACTGG	2 cut(s)	265, 1057
BseBI	CCWGG	2 cut(s)	543, 612
BseGI	GGATG	4 cut(s)	209, 285, 583, 940
BseLI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
BseMII	CTCAG	1 cut(s)	725
BseNI	ACTGG	2 cut(s)	265, 1057
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	85, 88, 509
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	2 cut(s)	516, 634
BshFI	GGCC	1 cut(s)	965
BslI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
BsmAI	GTCTC	2 cut(s)	16, 153
BsmBI	CGTCTC	2 cut(s)	16, 153
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	965
Bsp143I	GATC	3 cut(s)	139, 853, 957
BspANI	GGCC	1 cut(s)	965
BspCNI	CTCAG	1 cut(s)	724
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	673
BspMAI	CTGCAG	1 cut(s)	853
BsrI	ACTGG	2 cut(s)	265, 1057
BssMI	GATC	3 cut(s)	139, 853, 957
BssSI	CACGAG	2 cut(s)	108, 372
Bst2BI	CACGAG	2 cut(s)	108, 372
Bst2UI	CCWGG	2 cut(s)	543, 612
Bst4CI	ACNGT	4 cut(s)	77, 529, 776, 806
Bst6I	CTCTTC	1 cut(s)	902
BstC8I	GCNNGC	2 cut(s)	369, 522
BstDEI	CTNAG	2 cut(s)	711, 1075
BstF5I	GGATG	4 cut(s)	209, 285, 583, 940
BstKTI	GATC	3 cut(s)	142, 856, 960
BstMAI	GTCTC	2 cut(s)	16, 153
BstMBI	GATC	3 cut(s)	139, 853, 957
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 110
BstNI	CCWGG	2 cut(s)	543, 612
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	541, 610
BstSFI	CTRYAG	2 cut(s)	525, 849
BstV1I	GCAGC	3 cut(s)	85, 88, 509
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	965
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	209, 285, 583, 940
BtsIMutI	CAGTG	4 cut(s)	534, 719, 781, 1050
Cac8I	GCNNGC	2 cut(s)	369, 522
CciI	TCATGA	1 cut(s)	634
Cfr13I	GGNCC	2 cut(s)	247, 964
CseI	GACGC	1 cut(s)	170
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	5 cut(s)	34, 94, 521, 635, 928
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	711, 1075
DpnI	GATC	3 cut(s)	141, 855, 959
DpnII	GATC	3 cut(s)	139, 853, 957
DraIII	CACNNNGTG	1 cut(s)	614
Eam1104I	CTCTTC	1 cut(s)	902
EarI	CTCTTC	1 cut(s)	902
Eco47I	GGWCC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	964
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	541, 610
Esp3I	CGTCTC	2 cut(s)	16, 153
FaeI	CATG	5 cut(s)	37, 97, 524, 638, 931
FatI	CATG	5 cut(s)	33, 93, 520, 634, 927
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	99, 102, 498
FokI	GGATG	4 cut(s)	196, 292, 570, 947
Fsp4HI	GCNGC	3 cut(s)	99, 102, 498
FspBI	CTAG	4 cut(s)	12, 405, 707, 1099
GluI	GCNGC	3 cut(s)	99, 102, 498
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	965
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	37, 97, 524, 638, 931
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HphI	GGTGA	2 cut(s)	557, 935
Hpy166II	GTNNAC	3 cut(s)	247, 536, 666
Hpy188I	TCNGA	3 cut(s)	158, 380, 891
Hpy188III	TCNNGA	5 cut(s)	149, 626, 635, 730, 992
Hpy8I	GTNNAC	3 cut(s)	247, 536, 666
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	4 cut(s)	77, 529, 776, 806
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	7 cut(s)	367, 416, 497, 651, 851, 877, 970
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 110
HpyF3I	CTNAG	2 cut(s)	711, 1075
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	5 cut(s)	37, 97, 524, 638, 931
Kzo9I	GATC	3 cut(s)	139, 853, 957
Lsp1109I	GCAGC	3 cut(s)	85, 88, 509
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	4 cut(s)	12, 405, 707, 1099
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	3 cut(s)	141, 855, 959
MboI	GATC	3 cut(s)	139, 853, 957
MboII	GAAGA	3 cut(s)	583, 852, 889
MfeI	CAATTG	1 cut(s)	194
MluCI	AATT	8 cut(s)	194, 301, 383, 400, 435, 480, 656, 763
MlyI	GAGTC	2 cut(s)	327, 541
MmeI	TCCRAC	1 cut(s)	795
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	543, 612
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	543, 612
MwoI	GCNNNNNNNGC	2 cut(s)	17, 110
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	3 cut(s)	139, 853, 957
NlaIII	CATG	5 cut(s)	37, 97, 524, 638, 931
NlaIV	GGNNCC	1 cut(s)	673
NmuCI	GTSAC	1 cut(s)	923
NspI	RCATGY	1 cut(s)	524
PaeI	GCATGC	1 cut(s)	524
PagI	TCATGA	1 cut(s)	634
PctI	GAATGC	1 cut(s)	818
PfeI	GAWTC	9 cut(s)	169, 225, 256, 631, 892, 995, 1025, 1039, 1079
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	100, 103, 499
PleI	GAGTC	2 cut(s)	326, 540
PpsI	GAGTC	2 cut(s)	326, 540
Psp6I	CCWGG	2 cut(s)	541, 610
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	2 cut(s)	541, 610
PspN4I	GGNNCC	1 cut(s)	673
PspPI	GGNCC	2 cut(s)	247, 964
PstI	CTGCAG	1 cut(s)	853
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	99, 102, 498
Sau3AI	GATC	3 cut(s)	139, 853, 957
Sau96I	GGNCC	2 cut(s)	247, 964
SchI	GAGTC	2 cut(s)	327, 541
ScrFI	CCNGG	2 cut(s)	543, 612
SexAI	ACCWGGT	1 cut(s)	610
SfcI	CTRYAG	2 cut(s)	525, 849
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	233
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	8 cut(s)	194, 301, 383, 400, 435, 480, 656, 763
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	4 cut(s)	12, 405, 707, 1099
StyD4I	CCNGG	2 cut(s)	541, 610
TaaI	ACNGT	4 cut(s)	77, 529, 776, 806
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	478, 818, 1028
TasI	AATT	8 cut(s)	194, 301, 383, 400, 435, 480, 656, 763
TfiI	GAWTC	9 cut(s)	169, 225, 256, 631, 892, 995, 1025, 1039, 1079
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	4 cut(s)	534, 719, 781, 1057
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	3 cut(s)	98, 101, 497
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	6 cut(s)	251, 296, 300, 623, 859, 951
TspGWI	ACGGA	1 cut(s)	847
TspRI	CASTG	4 cut(s)	534, 719, 781, 1057
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	435, 763
XceI	RCATGY	1 cut(s)	524
XspI	CTAG	4 cut(s)	12, 405, 707, 1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.