Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Forward (+)

7897219 .. 7901191

Gene Structure 3973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07960.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCAACGGCTAGTTTGGCAAGAGAAATAGGCATGGCCATTATAAAAGCCACCAACAACTCAAGCTTTGGGAGAGGCTGGTTCAGCCCTCACATGGCTGCTGCTTCTCGCGCCATCGCTGAACGTATCCCATTGGTTGATCTCGTTCTTGAAGTCAGAGACGCAAGGATTCCATTGTCATCAGCGTGCAAGCAATTGGAGAACTACACATCCTCTTCCAAGCGAATCATAGTAATGAACAAGGTGGACCTTGCAAATCATTCCCAGTTGAAGGAGTGGATGAACTACTTTGAGCAAAATAATTGCATTTCATATGGAGTCAATGCCCATAATAAAGAGATCATTAAGAAGTTTTTGACCTTTTTGCAAGCTCGTGTCAGAGAACTGAATAACAATGATAGTTCTAGTTATACTGCAACGATATTGCTACTTGGAATTCCTAATGTTGGTAAGTCAGCCCTTGCCAACTCCTTACATCGAATTGGGAGGATTAGTGCAGCAGAAAAGGGAAAGTTGAAGCATGATACAGTGAGTCCACAGCCTGGTGAGACAAAAGATATAAGCAGCTTAAAGATCGGAAGTCATCCCAATATTTATGTTTTGGACACACCAGGTGTTTTGCCTCCGCAGATTCATGATGTAGAGGTCTGCACCAAATTAGCATTGACAGGAACCATTGTAGATTATATTTCTGGGGAGAAAGAACTAGCTCAGTGTTTTCTGGCTATCTTGAACAGAAGCAACGAATACAAGAAATGGGCAAATTTGTCCAACAGTGAGAATGGTAGAACATGGATAGACCACAATATAGAATGCTCAAATAGCTCTAAAGATATCAAAGAGAAAAGACAATACTCTGCAGATCACACACAGGATTTCATGGTGCAAAATGTTCGTCAGACTCTCTTCAAGGTCATATCATCTTTTGATGGTAACGTGGAGGATGAAATGCTTATTGAGGAAGAGATGAAGGCCGTGCAAGGAATTTTTCAGGTTCCTACAGAATCCAAAAAGTACACTCAATATAAAGCCGAATCAAAGTTGTTGAATCTTTTCCGCACTGGGAGGCTTGGGCATTATACCTTAGATTCTATACCAACTCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

370

Amino Acids

41.31

Weight (kDa)

8.63

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	49 - 119	5.7e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	626, 1057
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	435, 763, 984
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	1016
AfiI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
AgsI	TTSAA	6 cut(s)	152, 271, 517, 733, 910, 1048
AjnI	CCWGG	2 cut(s)	541, 610
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	5 cut(s)	66, 371, 567, 710, 825
AluI	AGCT	5 cut(s)	66, 371, 567, 710, 825
Alw26I	GTCTC	2 cut(s)	153, 542
AoxI	GGCC	2 cut(s)	36, 972
ApeKI	GCWGC	4 cut(s)	98, 101, 497, 564
ApoI	RAATTY	3 cut(s)	435, 763, 984
ArsI	GACNNNNNNTTYG	2 cut(s)	880, 912
Asp700I	GAANNNNTTC	1 cut(s)	1052
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	247
BalI	TGGCCA	1 cut(s)	38
BauI	CACGAG	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	85, 88, 509, 576
BccI	CCATC	2 cut(s)	122, 923
BceAI	ACGGC	2 cut(s)	24, 959
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	2 cut(s)	543, 612
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	153, 542
BfaI	CTAG	3 cut(s)	12, 405, 707
BfmI	CTRYAG	2 cut(s)	858, 999
BfuI	GTATCC	1 cut(s)	137
BisI	GCNGC	4 cut(s)	99, 102, 498, 565
BlsI	GCNGC	4 cut(s)	100, 103, 499, 566
Bme1390I	CCNGG	2 cut(s)	543, 612
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	673, 996
BmrFI	CCNGG	2 cut(s)	543, 612
BmrI	ACTGGG	2 cut(s)	259, 1071
BmuI	ACTGGG	2 cut(s)	259, 1071
BpuEI	CTTGAG	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
Bse1I	ACTGG	2 cut(s)	265, 1066
BseBI	CCWGG	2 cut(s)	543, 612
BseGI	GGATG	4 cut(s)	209, 285, 583, 949
BseLI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
BseMII	CTCAG	1 cut(s)	725
BseNI	ACTGG	2 cut(s)	265, 1066
BseXI	GCAGC	4 cut(s)	85, 88, 509, 576
BsgI	GTGCAG	2 cut(s)	516, 634
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	38, 974
BslI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
BsmAI	GTCTC	2 cut(s)	153, 542
BsmBI	CGTCTC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	2 cut(s)	38, 974
Bsp143I	GATC	4 cut(s)	139, 339, 573, 862
BspACI	CCGC	2 cut(s)	626, 1057
BspANI	GGCC	2 cut(s)	38, 974
BspCNI	CTCAG	1 cut(s)	724
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	2 cut(s)	673, 996
BspMAI	CTGCAG	1 cut(s)	862
BsrI	ACTGG	2 cut(s)	265, 1066
BssMI	GATC	4 cut(s)	139, 339, 573, 862
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	543, 612
Bst4CI	ACNGT	2 cut(s)	529, 776
Bst6I	CTCTTC	3 cut(s)	220, 911, 957
BstC8I	GCNNGC	3 cut(s)	187, 191, 369
BstDEI	CTNAG	3 cut(s)	711, 1084, 1107
BstF5I	GGATG	4 cut(s)	209, 285, 583, 949
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	4 cut(s)	142, 342, 576, 865
BstMAI	GTCTC	2 cut(s)	153, 542
BstMBI	GATC	4 cut(s)	139, 339, 573, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 84, 110, 822
BstNI	CCWGG	2 cut(s)	543, 612
BstSCI	CCNGG	2 cut(s)	541, 610
BstSFI	CTRYAG	2 cut(s)	858, 999
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	85, 88, 509, 576
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	38, 974
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	209, 285, 583, 949
BtsIMutI	CAGTG	4 cut(s)	534, 719, 781, 1059
Cac8I	GCNNGC	3 cut(s)	187, 191, 369
CciI	TCATGA	1 cut(s)	634
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	1 cut(s)	170
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	1015
CviAII	CATG	6 cut(s)	34, 94, 521, 635, 792, 880
CviQI	GTAC	1 cut(s)	1015
DdeI	CTNAG	3 cut(s)	711, 1084, 1107
DpnI	GATC	4 cut(s)	141, 341, 575, 864
DpnII	GATC	4 cut(s)	139, 339, 573, 862
DraIII	CACNNNGTG	1 cut(s)	614
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	3 cut(s)	220, 911, 957
EarI	CTCTTC	3 cut(s)	220, 911, 957
Eco32I	GATATC	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	541, 610
EcoRV	GATATC	1 cut(s)	835
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	6 cut(s)	37, 97, 524, 638, 795, 883
FatI	CATG	6 cut(s)	33, 93, 520, 634, 791, 879
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	99, 102, 498, 565
FokI	GGATG	4 cut(s)	196, 292, 570, 956
Fsp4HI	GCNGC	4 cut(s)	99, 102, 498, 565
FspBI	CTAG	3 cut(s)	12, 405, 707
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	4 cut(s)	99, 102, 498, 565
HaeIII	GGCC	2 cut(s)	38, 974
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	6 cut(s)	37, 97, 524, 638, 795, 883
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	64
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	247, 536, 1017
Hpy188I	TCNGA	4 cut(s)	158, 380, 578, 900
Hpy188III	TCNNGA	3 cut(s)	149, 635, 730
Hpy8I	GTNNAC	3 cut(s)	247, 536, 1017
HpyAV	CCTTC	2 cut(s)	265, 964
HpyCH4III	ACNGT	2 cut(s)	529, 776
HpyCH4IV	ACGT	2 cut(s)	124, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 84, 110, 822
HpyF3I	CTNAG	3 cut(s)	711, 1084, 1107
HpySE526I	ACGT	2 cut(s)	124, 936
Hsp92II	CATG	6 cut(s)	37, 97, 524, 638, 795, 883
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	139, 339, 573, 862
Lsp1109I	GCAGC	4 cut(s)	85, 88, 509, 576
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	3 cut(s)	12, 405, 707
MaeII	ACGT	2 cut(s)	124, 936
MaeIII	GTNAC	1 cut(s)	932
MalI	GATC	4 cut(s)	141, 341, 575, 864
MboI	GATC	4 cut(s)	139, 339, 573, 862
MboII	GAAGA	3 cut(s)	207, 898, 974
MfeI	CAATTG	1 cut(s)	194
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	7 cut(s)	194, 301, 435, 480, 656, 763, 984
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	3 cut(s)	327, 541, 895
MmeI	TCCRAC	1 cut(s)	795
MnlI	CCTC	9 cut(s)	68, 99, 223, 480, 633, 637, 934, 952, 1059
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	1052
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	345, 569
MslI	CAYNNNNRTG	2 cut(s)	184, 233
Msp20I	TGGCCA	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	543, 612
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	543, 612
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	17, 84, 110, 822
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	4 cut(s)	139, 339, 573, 862
NlaIII	CATG	6 cut(s)	37, 97, 524, 638, 795, 883
NlaIV	GGNNCC	2 cut(s)	673, 996
PagI	TCATGA	1 cut(s)	634
PctI	GAATGC	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	1052
PfeI	GAWTC	7 cut(s)	169, 225, 631, 1004, 1034, 1048, 1088
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	4 cut(s)	100, 103, 499, 566
PleI	GAGTC	3 cut(s)	326, 540, 895
PpsI	GAGTC	3 cut(s)	326, 540, 895
PsiI	TTATAA	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	541, 610
PspGI	CCWGG	2 cut(s)	541, 610
PspN4I	GGNNCC	2 cut(s)	673, 996
PspPI	GGNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	862
RsaI	GTAC	1 cut(s)	1016
RsaNI	GTAC	1 cut(s)	1015
RseI	CAYNNNNRTG	2 cut(s)	184, 233
SaqAI	TTAA	2 cut(s)	345, 569
SatI	GCNGC	4 cut(s)	99, 102, 498, 565
Sau3AI	GATC	4 cut(s)	139, 339, 573, 862
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	3 cut(s)	327, 541, 895
ScrFI	CCNGG	2 cut(s)	543, 612
SexAI	ACCWGGT	1 cut(s)	610
SfcI	CTRYAG	2 cut(s)	858, 999
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	2 cut(s)	184, 233
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	7 cut(s)	194, 301, 435, 480, 656, 763, 984
SsiI	CCGC	2 cut(s)	626, 1057
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	12, 405, 707
StyD4I	CCNGG	2 cut(s)	541, 610
TaaI	ACNGT	2 cut(s)	529, 776
TaiI	ACGT	2 cut(s)	127, 939
TaqI	TCGA	1 cut(s)	478
TasI	AATT	7 cut(s)	194, 301, 435, 480, 656, 763, 984
TatI	WGTACW	1 cut(s)	1014
TfiI	GAWTC	7 cut(s)	169, 225, 631, 1004, 1034, 1048, 1088
Tru1I	TTAA	2 cut(s)	345, 569
Tru9I	TTAA	2 cut(s)	345, 569
TscAI	CASTG	4 cut(s)	534, 719, 781, 1066
TseI	GCWGC	4 cut(s)	98, 101, 497, 564
TspDTI	ATGAA	7 cut(s)	251, 296, 300, 623, 868, 960, 983
TspRI	CASTG	4 cut(s)	534, 719, 781, 1066
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	3 cut(s)	435, 763, 984
XmnI	GAANNNNTTC	1 cut(s)	1052
XspI	CTAG	3 cut(s)	12, 405, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.