Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Forward (+)

16722805 .. 16727978

Gene Structure 5174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G108800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCAACGGCTACTTTGGCAAGACAAATAGGTGGGGCTATTACAAAAGCTACCAGCAGCACAAGCTCTGGAAACGGATGGTACAGCCCTCACATGGCTGCTGCTTCTCGCGCCATCGCTGAACGGATCCCATTGGTCGATCTCATTCTCGAAGTCAGAGATGCGAGGATTCCATTGTCATCAGCGTATGATCAACTGAGGAACTGTACATCCTCGTCAAAGCGAATTATAGTGATGAACAAGATGGACCTTGCAAATAATTCACAACTGAAGGATTGGATGAAGTACTTTGAGCAAAAGAATTACATTTCGTATGGAGTCAACGCCCACAACAAAGAGAGCATTCAGCAGTTGTTGAACTTTTTGCAAGCTCGAGTCCGAGAATTGAAGAAAGTTGATCACTCTAGTCATACCACAACAATATTGCTAGTTGGAATTCCTAATGTTGGCAAGTCAGCTCTTGCCAACTCCTTGCATCGAATTGGAAGGATTAGTGCAGCAGAGAAAGGAAAGTTGAAGCACGCTACTGTGAGTCCACAGCCCGGTGAGACAAAAAATATTACTGGCTTGAAGATTGCAAGCCATCCCAATATTTATGTGTTGGACACCCCAGGTGTTTTGCCTCCACACATTCTAGATGATGAGGTCTGCACCAAGCTAGCCTTGACAGGAACGATTCAAGATTGTTTTGCTGGGGAAAACGAACTAGCTCAGTGTTTTCTGTCTATCTTGAACAGGAGTGATGAATACAAGAAGTGGGCACAATTGTCCAACAGTGAGAATGAAAGATCTTTTGCAGATCGCAATATAAAATGCTCAACTAGCTCTGAAATGGGCATGAAACGAAAAAGGCAATACCCCACTGATCACACACAGGATTTCATAGTGCATGATGTTCGTCGGACACTCTTTGAAGTGATATCATCTTTTGATGGTAATGTGGAAGATGAAAGGCTTATTGAGGAAGAGTTCAAGGCCATGCACGCAGCTTTTCAGGTTCCTCTGGAATCCGAACATTACGCCCAAAATAAAATCGCAGCTAAGTTGTTGAATCTTTTTCGTACTGGAAGGCTTGGACATTACATTTTAGATTCTATTCCAAGAAAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

371

Amino Acids

41.42

Weight (kDa)

9.03

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AclWI	GGATC	2 cut(s)	121, 134
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	4 cut(s)	83, 208, 287, 1063
AfiI	CCNNNNNNNGG	3 cut(s)	94, 446, 542
AgsI	TTSAA	9 cut(s)	358, 388, 517, 571, 680, 733, 914, 973, 1051
AjnI	CCWGG	1 cut(s)	610
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	9 cut(s)	50, 66, 371, 458, 658, 710, 825, 989, 1040
AluI	AGCT	9 cut(s)	50, 66, 371, 458, 658, 710, 825, 989, 1040
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	121, 134
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	1 cut(s)	975
ApeKI	GCWGC	6 cut(s)	57, 98, 101, 497, 986, 1037
ApoI	RAATTY	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	557
AsuNHI	GCTAGC	1 cut(s)	658
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	126
BbvI	GCAGC	6 cut(s)	69, 85, 88, 509, 998, 1049
BccI	CCATC	5 cut(s)	72, 122, 238, 591, 926
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	878, 912
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	3 cut(s)	190, 397, 865
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	7 cut(s)	405, 428, 635, 659, 707, 822, 1111
BglII	AGATCT	1 cut(s)	788
BisI	GCNGC	6 cut(s)	58, 99, 102, 498, 987, 1038
BlsI	GCNGC	6 cut(s)	59, 100, 103, 499, 988, 1039
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	543, 612
Bme18I	GGWCC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	128, 999
BmrFI	CCNGG	2 cut(s)	543, 612
BmsI	GCATC	2 cut(s)	151, 484
BmtI	GCTAGC	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 446, 542
Bse1I	ACTGG	2 cut(s)	568, 1069
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	4 cut(s)	83, 209, 285, 583
BseLI	CCNNNNNNNGG	3 cut(s)	94, 446, 542
BseMII	CTCAG	2 cut(s)	188, 725
BseNI	ACTGG	2 cut(s)	568, 1069
BseSI	GKGCMC	1 cut(s)	763
BseXI	GCAGC	6 cut(s)	69, 85, 88, 509, 998, 1049
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	2 cut(s)	516, 634
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	977
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	543
BslI	CCNNNNNNNGG	3 cut(s)	94, 446, 542
BsmAI	GTCTC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	977
BsoBI	CYCGRG	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp1407I	TGTACA	1 cut(s)	206
Bsp143I	GATC	7 cut(s)	126, 139, 190, 397, 788, 799, 865
BspANI	GGCC	1 cut(s)	977
BspCNI	CTCAG	2 cut(s)	189, 724
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	128, 999
BspOI	GCTAGC	1 cut(s)	662
BspPI	GGATC	2 cut(s)	121, 134
BsrGI	TGTACA	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	568, 1069
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	7 cut(s)	126, 139, 190, 397, 788, 799, 865
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	3 cut(s)	206, 529, 776
Bst6I	CTCTTC	1 cut(s)	960
BstAUI	TGTACA	1 cut(s)	206
BstC8I	GCNNGC	5 cut(s)	369, 522, 580, 660, 984
BstDEI	CTNAG	3 cut(s)	197, 711, 1041
BstF5I	GGATG	4 cut(s)	83, 209, 285, 583
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	7 cut(s)	129, 142, 193, 400, 791, 802, 868
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	7 cut(s)	126, 139, 190, 397, 788, 799, 865
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 63, 110, 822, 983
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	2 cut(s)	541, 610
BstSLI	GKGCMC	1 cut(s)	763
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	6 cut(s)	69, 85, 88, 509, 998, 1049
BstX2I	RGATCY	2 cut(s)	126, 788
BstYI	RGATCY	2 cut(s)	126, 788
BsuRI	GGCC	1 cut(s)	977
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	83, 209, 285, 583
BtsIMutI	CAGTG	3 cut(s)	719, 781, 861
Cac8I	GCNNGC	5 cut(s)	369, 522, 580, 660, 984
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	4 cut(s)	82, 207, 286, 1062
CviAII	CATG	4 cut(s)	94, 838, 890, 979
CviQI	GTAC	4 cut(s)	82, 207, 286, 1062
DdeI	CTNAG	3 cut(s)	197, 711, 1041
DpnI	GATC	7 cut(s)	128, 141, 192, 399, 790, 801, 867
DpnII	GATC	7 cut(s)	126, 139, 190, 397, 788, 799, 865
Eam1104I	CTCTTC	1 cut(s)	960
EarI	CTCTTC	1 cut(s)	960
Eco32I	GATATC	1 cut(s)	921
Eco47I	GGWCC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	921
FaeI	CATG	4 cut(s)	97, 841, 893, 982
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FatI	CATG	4 cut(s)	93, 837, 889, 978
FbaI	TGATCA	3 cut(s)	190, 397, 865
Fnu4HI	GCNGC	6 cut(s)	58, 99, 102, 498, 987, 1038
FokI	GGATG	4 cut(s)	90, 196, 292, 570
Fsp4HI	GCNGC	6 cut(s)	58, 99, 102, 498, 987, 1038
FspBI	CTAG	7 cut(s)	405, 428, 635, 659, 707, 822, 1111
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	6 cut(s)	58, 99, 102, 498, 987, 1038
GsaI	CCCAGC	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	977
HapII	CCGG	1 cut(s)	543
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	4 cut(s)	97, 841, 893, 982
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	8 cut(s)	169, 318, 375, 532, 676, 1007, 1051, 1091
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	2 cut(s)	322, 536
Hpy188I	TCNGA	5 cut(s)	158, 380, 829, 903, 1012
Hpy188III	TCNNGA	6 cut(s)	69, 149, 635, 680, 730, 1004
Hpy8I	GTNNAC	2 cut(s)	322, 536
Hpy99I	CGWCG	1 cut(s)	903
HpyAV	CCTTC	3 cut(s)	265, 480, 1062
HpyCH4III	ACNGT	3 cut(s)	206, 529, 776
HpyCH4V	TGCA	9 cut(s)	254, 367, 475, 497, 578, 651, 797, 889, 982
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 63, 110, 822, 983
HpyF3I	CTNAG	3 cut(s)	197, 711, 1041
Hsp92II	CATG	4 cut(s)	97, 841, 893, 982
HspAI	GCGC	1 cut(s)	111
Ksp22I	TGATCA	3 cut(s)	190, 397, 865
Kzo9I	GATC	7 cut(s)	126, 139, 190, 397, 788, 799, 865
Lsp1109I	GCAGC	6 cut(s)	69, 85, 88, 509, 998, 1049
LweI	GCATC	2 cut(s)	151, 484
MaeI	CTAG	7 cut(s)	405, 428, 635, 659, 707, 822, 1111
MalI	GATC	7 cut(s)	128, 141, 192, 399, 790, 801, 867
MboI	GATC	7 cut(s)	126, 139, 190, 397, 788, 799, 865
MboII	GAAGA	4 cut(s)	400, 583, 956, 977
MfeI	CAATTG	1 cut(s)	764
MflI	RGATCY	2 cut(s)	126, 788
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	7 cut(s)	225, 259, 301, 383, 435, 480, 764
MlyI	GAGTC	3 cut(s)	327, 384, 541
MmeI	TCCRAC	4 cut(s)	412, 582, 795, 881
MnlI	CCTC	8 cut(s)	99, 159, 192, 223, 633, 637, 955, 1011
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	2 cut(s)	543, 612
MunI	CAATTG	1 cut(s)	764
Mva1269I	GAATGC	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	5 cut(s)	17, 63, 110, 822, 983
NciI	CCSGG	1 cut(s)	543
NdeII	GATC	7 cut(s)	126, 139, 190, 397, 788, 799, 865
NheI	GCTAGC	1 cut(s)	658
NlaIII	CATG	4 cut(s)	97, 841, 893, 982
NlaIV	GGNNCC	2 cut(s)	128, 999
PaeR7I	CTCGAG	1 cut(s)	372
PctI	GAATGC	1 cut(s)	342
PfeI	GAWTC	5 cut(s)	169, 676, 1007, 1051, 1091
PkrI	GCNGC	6 cut(s)	59, 100, 103, 499, 988, 1039
PleI	GAGTC	3 cut(s)	326, 383, 540
PpsI	GAGTC	3 cut(s)	326, 383, 540
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	128, 999
PspPI	GGNCC	1 cut(s)	247
PspXI	VCTCGAGB	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	126, 788
RsaI	GTAC	4 cut(s)	83, 208, 287, 1063
RsaNI	GTAC	4 cut(s)	82, 207, 286, 1062
SatI	GCNGC	6 cut(s)	58, 99, 102, 498, 987, 1038
Sau3AI	GATC	7 cut(s)	126, 139, 190, 397, 788, 799, 865
Sau96I	GGNCC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	287
SchI	GAGTC	3 cut(s)	327, 384, 541
ScrFI	CCNGG	2 cut(s)	543, 612
SduI	GDGCHC	1 cut(s)	763
SfaNI	GCATC	2 cut(s)	151, 484
Sfr274I	CTCGAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	247
SlaI	CTCGAG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	7 cut(s)	225, 259, 301, 383, 435, 480, 764
SspI	AATATT	3 cut(s)	423, 559, 592
SspMI	CTAG	7 cut(s)	405, 428, 635, 659, 707, 822, 1111
StyD4I	CCNGG	2 cut(s)	541, 610
TaaI	ACNGT	3 cut(s)	206, 529, 776
TaqI	TCGA	4 cut(s)	138, 150, 373, 478
TasI	AATT	7 cut(s)	225, 259, 301, 383, 435, 480, 764
TatI	WGTACW	2 cut(s)	206, 285
TfiI	GAWTC	5 cut(s)	169, 676, 1007, 1051, 1091
TscAI	CASTG	3 cut(s)	719, 781, 868
TseI	GCWGC	6 cut(s)	57, 98, 101, 497, 986, 1037
TspDTI	ATGAA	7 cut(s)	251, 296, 759, 798, 854, 871, 963
TspGWI	ACGGA	2 cut(s)	90, 139
TspRI	CASTG	3 cut(s)	719, 781, 868
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	634
XhoI	CTCGAG	1 cut(s)	372
XspI	CTAG	7 cut(s)	405, 428, 635, 659, 707, 822, 1111
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.