Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Forward (+)

32056975 .. 32060521

Gene Structure 3547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCAACGGCTAGATTAGCGAGACGAATAGGCATGGCTATTGTAAAAGCCACCAACACCACAAGCTCTGGGAACGGTTGGTTCAGCCCTCACATGGCTGCTGCTTCTCGTGCCATCGCTGAACGTATCCCATTGGTTGATCTCGTTCTTGAAGTCAGAGACGCAAGGATTCCATTGTCATCAGCGTACAAGCAATTGGAGAACTACACATCCTCCTCCAAGCGAATCATAGTAATGAACAAGGTGGACCTTGCGAATCGTTCCCAGTTGAAGGTATGGATGAAGTATTTTGAGCAAAATAATTGCATTTCATATGGAGTCAATGCCCATAATAAAGAGAGCATTAAGCAGTTTTTGAACTTTTTGCAAGCTCGTGTCAGAGAATTGAATAACAATGATAATTCTAGTTATACTGCAACGATATTGCTACTTGGAATTCCTAATGTTGGTAAGTCAGCCCTTGCCAACTCCTTACATCGAATTGGGAGGATTAGTGCAGCAGAAAAGGGAAAGTTGAAGCATGCTACAGTGAGTCCACAGCCTGGTGAAACAAAAGATATAAGCAGTTTGAAGATTGGAAGTCATCCCAATATTTATGTTTTGGACACACCAGGTGTTTTGCCTCCAGAGATTTATGATGTAGAGGTCTGCACCAAATTAGCGTTGACAGGAACCATTATAGATTGTTATGCTGGGGATAAAGAACTAGCTCAGTGTTTTCTGGCTATCTTGAACAGAAGCGACGAATACAAGAAATGGGCAAATTTGTCCAACAGTGAGAATGGTAGAACATTGATAGACCACAGTATAGAATGCTCAAATAGCTCGAAAGACATCAAACGGAAAAGAAGATACTCTGCAGATCACACACAGGATTTCATAGTGCAAGATGTTCGTCAGACTCTCTTCAAAATCATATCATCTTTCAATGGTGACATGGAGGATGAAATGCTTATTGAGGAACAGATCAAGGCCCTGCAAGGAGTTTTTCAGTTTCCTCTGGAATCCAAAAAGAACACTCAATATAAAGCCGAATCGAAGTTATTGAATCTTTTTCGCACTGGGAGGCTTGGACATTATACCTTAGATTCTATACCAAGAAACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

369

Amino Acids

41.38

Weight (kDa)

9.31

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	141 - 208	3.2e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AcsI	RAATTY	2 cut(s)	435, 763
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
AjnI	CCWGG	2 cut(s)	541, 610
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	4 cut(s)	66, 371, 710, 825
AluI	AGCT	4 cut(s)	66, 371, 710, 825
Alw26I	GTCTC	2 cut(s)	16, 153
AoxI	GGCC	1 cut(s)	972
ApeKI	GCWGC	3 cut(s)	98, 101, 497
ApoI	RAATTY	2 cut(s)	435, 763
AspS9I	GGNCC	2 cut(s)	247, 973
AsuHPI	GGTGA	2 cut(s)	557, 944
AvaII	GGWCC	1 cut(s)	247
BauI	CACGAG	2 cut(s)	108, 372
BbvI	GCAGC	3 cut(s)	85, 88, 509
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	2 cut(s)	543, 612
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	16, 153
BfaI	CTAG	4 cut(s)	12, 405, 707, 1108
BfmI	CTRYAG	2 cut(s)	525, 858
BfuI	GTATCC	1 cut(s)	137
BisI	GCNGC	3 cut(s)	99, 102, 498
BlsI	GCNGC	3 cut(s)	100, 103, 499
Bme1390I	CCNGG	2 cut(s)	543, 612
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	247, 973
BmiI	GGNNCC	1 cut(s)	673
BmrFI	CCNGG	2 cut(s)	543, 612
BmrI	ACTGGG	2 cut(s)	259, 1071
BmuI	ACTGGG	2 cut(s)	259, 1071
BpmI	CTGGAG	1 cut(s)	609
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 478, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
Bse1I	ACTGG	2 cut(s)	265, 1066
BseBI	CCWGG	2 cut(s)	543, 612
BseGI	GGATG	4 cut(s)	209, 285, 583, 949
BseLI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
BseMII	CTCAG	1 cut(s)	725
BseNI	ACTGG	2 cut(s)	265, 1066
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	85, 88, 509
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	2 cut(s)	516, 634
BshFI	GGCC	1 cut(s)	974
BslI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
BsmAI	GTCTC	2 cut(s)	16, 153
BsmBI	CGTCTC	2 cut(s)	16, 153
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	974
Bsp143I	GATC	3 cut(s)	139, 862, 966
BspANI	GGCC	1 cut(s)	974
BspCNI	CTCAG	1 cut(s)	724
BspLI	GGNNCC	1 cut(s)	673
BspMAI	CTGCAG	1 cut(s)	862
BsrI	ACTGG	2 cut(s)	265, 1066
BssMI	GATC	3 cut(s)	139, 862, 966
BssSI	CACGAG	2 cut(s)	108, 372
Bst2BI	CACGAG	2 cut(s)	108, 372
Bst2UI	CCWGG	2 cut(s)	543, 612
Bst4CI	ACNGT	4 cut(s)	77, 529, 776, 806
Bst6I	CTCTTC	1 cut(s)	911
BstC8I	GCNNGC	2 cut(s)	369, 522
BstDEI	CTNAG	2 cut(s)	711, 1084
BstF5I	GGATG	4 cut(s)	209, 285, 583, 949
BstKTI	GATC	3 cut(s)	142, 865, 969
BstMAI	GTCTC	2 cut(s)	16, 153
BstMBI	GATC	3 cut(s)	139, 862, 966
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 110, 822
BstNI	CCWGG	2 cut(s)	543, 612
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	541, 610
BstSFI	CTRYAG	2 cut(s)	525, 858
BstV1I	GCAGC	3 cut(s)	85, 88, 509
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	974
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	4 cut(s)	209, 285, 583, 949
BtsIMutI	CAGTG	4 cut(s)	534, 719, 781, 1059
Cac8I	GCNNGC	2 cut(s)	369, 522
Cfr13I	GGNCC	2 cut(s)	247, 973
CseI	GACGC	1 cut(s)	170
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	34, 94, 521, 937
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	711, 1084
DpnI	GATC	3 cut(s)	141, 864, 968
DpnII	GATC	3 cut(s)	139, 862, 966
DraIII	CACNNNGTG	1 cut(s)	614
Eam1104I	CTCTTC	1 cut(s)	911
EarI	CTCTTC	1 cut(s)	911
Eco47I	GGWCC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	973
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	541, 610
Esp3I	CGTCTC	2 cut(s)	16, 153
FaeI	CATG	4 cut(s)	37, 97, 524, 940
FatI	CATG	4 cut(s)	33, 93, 520, 936
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	99, 102, 498
FokI	GGATG	4 cut(s)	196, 292, 570, 956
Fsp4HI	GCNGC	3 cut(s)	99, 102, 498
FspBI	CTAG	4 cut(s)	12, 405, 707, 1108
GluI	GCNGC	3 cut(s)	99, 102, 498
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	974
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	4 cut(s)	37, 97, 524, 940
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HphI	GGTGA	2 cut(s)	557, 944
Hpy166II	GTNNAC	3 cut(s)	247, 536, 666
Hpy188I	TCNGA	3 cut(s)	158, 380, 900
Hpy188III	TCNNGA	4 cut(s)	149, 626, 730, 1001
Hpy8I	GTNNAC	3 cut(s)	247, 536, 666
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	4 cut(s)	77, 529, 776, 806
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	8 cut(s)	306, 367, 416, 497, 651, 860, 886, 979
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 110, 822
HpyF3I	CTNAG	2 cut(s)	711, 1084
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	4 cut(s)	37, 97, 524, 940
Kzo9I	GATC	3 cut(s)	139, 862, 966
Lsp1109I	GCAGC	3 cut(s)	85, 88, 509
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	4 cut(s)	12, 405, 707, 1108
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	932
MalI	GATC	3 cut(s)	141, 864, 968
MboI	GATC	3 cut(s)	139, 862, 966
MboII	GAAGA	3 cut(s)	583, 861, 898
MfeI	CAATTG	1 cut(s)	194
MluCI	AATT	8 cut(s)	194, 301, 383, 400, 435, 480, 656, 763
MlyI	GAGTC	3 cut(s)	327, 541, 895
MmeI	TCCRAC	1 cut(s)	795
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	543, 612
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	543, 612
MwoI	GCNNNNNNNGC	3 cut(s)	17, 110, 822
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	3 cut(s)	139, 862, 966
NlaIII	CATG	4 cut(s)	37, 97, 524, 940
NlaIV	GGNNCC	1 cut(s)	673
NmuCI	GTSAC	1 cut(s)	932
NspI	RCATGY	1 cut(s)	524
PaeI	GCATGC	1 cut(s)	524
PctI	GAATGC	1 cut(s)	818
PfeI	GAWTC	7 cut(s)	169, 225, 256, 1004, 1034, 1048, 1088
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	100, 103, 499
PleI	GAGTC	3 cut(s)	326, 540, 895
PpsI	GAGTC	3 cut(s)	326, 540, 895
Psp6I	CCWGG	2 cut(s)	541, 610
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	2 cut(s)	541, 610
PspN4I	GGNNCC	1 cut(s)	673
PspPI	GGNCC	2 cut(s)	247, 973
PstI	CTGCAG	1 cut(s)	862
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	99, 102, 498
Sau3AI	GATC	3 cut(s)	139, 862, 966
Sau96I	GGNCC	2 cut(s)	247, 973
SchI	GAGTC	3 cut(s)	327, 541, 895
ScrFI	CCNGG	2 cut(s)	543, 612
SexAI	ACCWGGT	1 cut(s)	610
SfcI	CTRYAG	2 cut(s)	525, 858
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	233
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	8 cut(s)	194, 301, 383, 400, 435, 480, 656, 763
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	4 cut(s)	12, 405, 707, 1108
StyD4I	CCNGG	2 cut(s)	541, 610
TaaI	ACNGT	4 cut(s)	77, 529, 776, 806
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	478, 827, 1037
TasI	AATT	8 cut(s)	194, 301, 383, 400, 435, 480, 656, 763
TfiI	GAWTC	7 cut(s)	169, 225, 256, 1004, 1034, 1048, 1088
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	4 cut(s)	534, 719, 781, 1066
TseFI	GTSAC	1 cut(s)	932
TseI	GCWGC	3 cut(s)	98, 101, 497
Tsp45I	GTSAC	1 cut(s)	932
TspDTI	ATGAA	5 cut(s)	251, 296, 300, 868, 960
TspGWI	ACGGA	1 cut(s)	856
TspRI	CASTG	4 cut(s)	534, 719, 781, 1066
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	435, 763
XceI	RCATGY	1 cut(s)	524
XspI	CTAG	4 cut(s)	12, 405, 707, 1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.