Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Forward (+)

17851632 .. 17855518

Gene Structure 3887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19810.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGGTTCAACTTTTCCTACCGGTCGAAACGAACATATAAGGGTCGGTGTCCGTTGCCTACATCTAAAACTCGAAAAATAACGGTATTTGAAACTCGAAGCGGAATGGCAACGGCTACTTTAGCAAGGCAAATAGGCAGAGCTATTACAAACAGCACAAGCGCGGGAAACGGATGGTTCAACCCTCACATGGCTGCTGCTTCCCGCGCCATTGCCGAACGGATCCCATTGGTCGATCTCGTTCTCGAAGTCAGAGACGCAAGGATTCCATTGTCGTCGGAGTTTGACCAACTAAGGAACTATACACCACTCTCAAAGAGAATAATACTGTTCAACAAGATGGACCTAGCGAACCGTTCTCAACTGAAGGACTGGATGAAGTACTTTAAACAAAATAATCGTGTTTCATATGGAGTCAATGCCCATAATAACGAGAGCATTCAGCAGATTACTTTTTCAGTTTGCTGGATATTGAGGACGGTTTACTTCTTACAGTTGTTGAACTTTTTGCAAGCTCAAATTGCAAGCCACCCCAATATTTACGTGCTGGACACCCCAGGCGTTTTGCCTCCACATATATCGGATGATGATGTCTGCACCAAGCTAGCCTTGACAGGAACGATTCAAGATTCTTTTGCTGGGGAAAAAGAACTGGCTCAGTATTTTCTGGCTATCTTGAACAGGAGTGACGAATACAAGAAATGGGCAAAGTTCTCCAACAGCGAGAATGAGGGATCACTTGCAAATAAGTACATAGAATCCTCAGCTAGCTCTGAAATCGGCATGAAACGGAAAAATCAATACCCCACAGATCACACGCAGGATTTCATAGTGCATGAGGTTCGTAAGACACTCTTTGAGATGATATCATCTTTCGACGGTGATGTGGAAGACGAAAGGCTTATTAAGGAAGAAATCAAGGCTATGGGAGGAGCTTTTCACGTTCCTTTGGAATCCGAAGAAGATGCTGAAAATAAAGTCGCAGCTAAGTTACTGAATCTTTTTCGTACCGGGAGGCTCGGACATTATATTTTAGATTGTATCCCAAGAAAACTCCAGTCCTGCGCAATTTCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

360

Amino Acids

40.78

Weight (kDa)

8.93

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1066
AccII	CGCG	2 cut(s)	164, 207
AciI	CCGC	3 cut(s)	102, 164, 205
AclWI	GGATC	3 cut(s)	217, 230, 742
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	3 cut(s)	383, 752, 1009
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgeI	ACCGGT	1 cut(s)	21
AgsI	TTSAA	7 cut(s)	10, 92, 181, 334, 502, 626, 679
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	7 cut(s)	143, 515, 604, 767, 771, 935, 986
AluI	AGCT	7 cut(s)	143, 515, 604, 767, 771, 935, 986
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	217, 230, 742
ApeKI	GCWGC	3 cut(s)	194, 197, 983
AsiGI	ACCGGT	1 cut(s)	21
AspLEI	GCGC	3 cut(s)	164, 209, 1067
AspS9I	GGNCC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	1012
AsuHPI	GGTGA	1 cut(s)	893
AsuNHI	GCTAGC	2 cut(s)	604, 767
AvaII	GGWCC	1 cut(s)	343
BamHI	GGATCC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	897
BbvCI	CCTCAGC	1 cut(s)	763
BbvI	GCAGC	3 cut(s)	181, 184, 995
BccI	CCATC	2 cut(s)	168, 334
BceAI	ACGGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	4 cut(s)	824, 858, 947, 981
BciT130I	CCWGG	1 cut(s)	558
BciVI	GTATCC	1 cut(s)	1052
BcnI	CCSGG	1 cut(s)	1012
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	3 cut(s)	347, 605, 768
BfuI	GTATCC	1 cut(s)	1052
BisI	GCNGC	3 cut(s)	195, 198, 984
BlsI	GCNGC	3 cut(s)	196, 199, 985
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	2 cut(s)	558, 1012
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	558, 1012
BmsI	GCATC	1 cut(s)	955
BmtI	GCTAGC	2 cut(s)	608, 771
BpiI	GAAGAC	1 cut(s)	897
BpmI	CTGGAG	1 cut(s)	1040
Bpu10I	CCTNAGC	1 cut(s)	763
BpuMI	CCSGG	1 cut(s)	1012
BsaAI	YACGTR	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	556
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	3 cut(s)	377, 657, 1057
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	3 cut(s)	179, 381, 589
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	671, 777
BseNI	ACTGG	3 cut(s)	377, 657, 1057
BseRI	GAGGAG	1 cut(s)	945
BseXI	GCAGC	3 cut(s)	181, 184, 995
BseYI	CCCAGC	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	580
Bsh1236I	CGCG	2 cut(s)	164, 207
Bsh1285I	CGRYCG	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	22, 1011
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	249
BsmBI	CGTCTC	1 cut(s)	249
BsmI	GAATGC	1 cut(s)	438
Bsp143I	GATC	4 cut(s)	222, 235, 734, 811
BspACI	CCGC	3 cut(s)	102, 164, 205
BspCNI	CTCAG	2 cut(s)	670, 776
BspFNI	CGCG	2 cut(s)	164, 207
BspLI	GGNNCC	1 cut(s)	224
BspOI	GCTAGC	2 cut(s)	608, 771
BspPI	GGATC	3 cut(s)	217, 230, 742
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	3 cut(s)	377, 657, 1057
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	4 cut(s)	222, 235, 734, 811
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	6 cut(s)	85, 330, 356, 481, 495, 881
BstBAI	YACGTR	1 cut(s)	544
BstC8I	GCNNGC	4 cut(s)	513, 526, 606, 769
BstDEI	CTNAG	4 cut(s)	293, 657, 763, 987
BstF5I	GGATG	3 cut(s)	179, 381, 589
BstFNI	CGCG	2 cut(s)	164, 207
BstHHI	GCGC	3 cut(s)	164, 209, 1067
BstKTI	GATC	4 cut(s)	225, 238, 737, 814
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	4 cut(s)	222, 235, 734, 811
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 206, 521
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	2 cut(s)	556, 1010
BstUI	CGCG	2 cut(s)	164, 207
BstV1I	GCAGC	3 cut(s)	181, 184, 995
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	1052
BtsCI	GGATG	3 cut(s)	179, 381, 589
Cac8I	GCNNGC	4 cut(s)	513, 526, 606, 769
CfoI	GCGC	3 cut(s)	164, 209, 1067
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	343
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	3 cut(s)	382, 751, 1008
CspAI	ACCGGT	1 cut(s)	21
CviAII	CATG	3 cut(s)	190, 784, 836
CviQI	GTAC	3 cut(s)	382, 751, 1008
DdeI	CTNAG	4 cut(s)	293, 657, 763, 987
DpnI	GATC	4 cut(s)	224, 237, 736, 813
DpnII	GATC	4 cut(s)	222, 235, 734, 811
DraI	TTTAAA	1 cut(s)	388
Eco32I	GATATC	1 cut(s)	867
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	867
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	3 cut(s)	193, 787, 839
FalI	AAGNNNNNCTT	4 cut(s)	593, 625, 839, 871
FatI	CATG	3 cut(s)	189, 783, 835
FauI	CCCGC	2 cut(s)	157, 212
FauNDI	CATATG	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	195, 198, 984
FokI	GGATG	3 cut(s)	186, 388, 596
Fsp4HI	GCNGC	3 cut(s)	195, 198, 984
FspBI	CTAG	3 cut(s)	347, 605, 768
FspI	TGCGCA	1 cut(s)	1066
GlaI	GCGC	3 cut(s)	163, 208, 1066
GluI	GCNGC	3 cut(s)	195, 198, 984
GsaI	CCCAGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	1040
HapII	CCGG	2 cut(s)	22, 1011
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	3 cut(s)	164, 209, 1067
Hin1II	CATG	3 cut(s)	193, 787, 839
Hin6I	GCGC	3 cut(s)	162, 207, 1065
HinP1I	GCGC	3 cut(s)	162, 207, 1065
HinfI	GANTC	7 cut(s)	265, 414, 622, 629, 758, 953, 997
HpaII	CCGG	2 cut(s)	22, 1011
HphI	GGTGA	1 cut(s)	893
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	6 cut(s)	254, 280, 583, 775, 958, 1022
Hpy188III	TCNNGA	3 cut(s)	245, 626, 676
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	2 cut(s)	280, 881
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	6 cut(s)	85, 330, 356, 481, 495, 881
HpyCH4IV	ACGT	2 cut(s)	543, 942
HpyCH4V	TGCA	5 cut(s)	511, 524, 597, 743, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 206, 521
HpyF3I	CTNAG	4 cut(s)	293, 657, 763, 987
HpySE526I	ACGT	2 cut(s)	543, 942
Hsp92II	CATG	3 cut(s)	193, 787, 839
HspAI	GCGC	3 cut(s)	162, 207, 1065
Kzo9I	GATC	4 cut(s)	222, 235, 734, 811
LmnI	GCTCC	1 cut(s)	932
Lsp1109I	GCAGC	3 cut(s)	181, 184, 995
LweI	GCATC	1 cut(s)	955
MaeI	CTAG	3 cut(s)	347, 605, 768
MaeII	ACGT	2 cut(s)	543, 942
MaeIII	GTNAC	2 cut(s)	686, 990
MalI	GATC	4 cut(s)	224, 237, 736, 813
MboI	GATC	4 cut(s)	222, 235, 734, 811
MboII	GAAGA	4 cut(s)	902, 923, 971, 974
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	2 cut(s)	519, 1068
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	2 cut(s)	258, 741
MnlI	CCTC	8 cut(s)	195, 468, 579, 724, 772, 832, 923, 1008
MseI	TTAA	2 cut(s)	387, 906
MspI	CCGG	2 cut(s)	22, 1011
MspR9I	CCNGG	2 cut(s)	558, 1012
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	2 cut(s)	164, 207
MwoI	GCNNNNNNNGC	3 cut(s)	122, 206, 521
NciI	CCSGG	1 cut(s)	1012
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	4 cut(s)	222, 235, 734, 811
NheI	GCTAGC	2 cut(s)	604, 767
NlaIII	CATG	3 cut(s)	193, 787, 839
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	686
NsbI	TGCGCA	1 cut(s)	1066
PctI	GAATGC	1 cut(s)	438
PfeI	GAWTC	6 cut(s)	265, 622, 629, 758, 953, 997
PinAI	ACCGGT	1 cut(s)	21
PkrI	GCNGC	3 cut(s)	196, 199, 985
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	556
PspFI	CCCAGC	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	3 cut(s)	383, 752, 1009
RsaNI	GTAC	3 cut(s)	382, 751, 1008
SaqAI	TTAA	2 cut(s)	387, 906
SatI	GCNGC	3 cut(s)	195, 198, 984
Sau3AI	GATC	4 cut(s)	222, 235, 734, 811
Sau96I	GGNCC	1 cut(s)	343
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	2 cut(s)	558, 1012
SfaNI	GCATC	1 cut(s)	955
SinI	GGWCC	1 cut(s)	343
Sse9I	AATT	2 cut(s)	519, 1068
SsiI	CCGC	3 cut(s)	102, 164, 205
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	3 cut(s)	347, 605, 768
StyD4I	CCNGG	2 cut(s)	556, 1010
TaaI	ACNGT	6 cut(s)	85, 330, 356, 481, 495, 881
TaiI	ACGT	2 cut(s)	546, 945
TaqI	TCGA	6 cut(s)	26, 73, 97, 234, 246, 876
TasI	AATT	2 cut(s)	519, 1068
TatI	WGTACW	2 cut(s)	381, 750
TfiI	GAWTC	6 cut(s)	265, 622, 629, 758, 953, 997
Tru1I	TTAA	2 cut(s)	387, 906
Tru9I	TTAA	2 cut(s)	387, 906
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	3 cut(s)	194, 197, 983
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	4 cut(s)	392, 396, 800, 817
TspGWI	ACGGA	4 cut(s)	42, 186, 235, 805
VpaK11BI	GGWCC	1 cut(s)	343
XspI	CTAG	3 cut(s)	347, 605, 768
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.