Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Forward (+)

35516618 .. 35520627

Gene Structure 4010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG160200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAACGGCTAGTTTAGCGAGACGAATAGGCATGGCTATTGTAAAAGCCACCAACACCACAAGCTCTGGGAACGGTTGGTTCAGCCCTCACATGGCTGCTGCTTCTCGTGCCATCGCTGAACGTATCCCATTGGTTGATCTCGTTCTTGAAGTCAGAGACGCAAGGATTCCATTGTCATCAGCGTACAAGCAATTGGAGAACTACACATCCTCCTCCAAGCGAATCATAGTAATGAACAAGGTGGACCTTGCGAATCGTTCCCAGTTGAAGGAATGGATGAAGTATTTTGAGCAAAATAATTACATTTCATATGGAGTCAATGCCCATAATAAAGAGAGCATTAAGCAGTTTTTGAACTTTTTGCAAGCTCGTGTCAGAGAATTGAATAACAATGATAATTCTAGTTATACTGCAACGATATTGCTACTTGGAATTCCTAATGTTGGTAAGTCAGCCCTTGCCAACTCCTTACATCGAATTGGGAGGATTAGTGCAGCAGAAAAGGGAAAGTTGAAGCATGCTACAGTGAGTCCACAGCCTGGTGAAACAAAAGATATAAGCAGTTTGAAGATTGGAAGTCATCCCAATATTTATGTTTTGGACACACCAGGTGTTTTGCCTCCAGAGATTCATGATGTAGAGGTCTGCACCAAATTAGTGTTGACAGGAACCATTATAGATTGTTATGCTGGGGATAAAGAACTAGCTCAGTGTTTTCTGGCAATCTTGAACAGAAGCGACGAATACAAGAAATGGGCAAATTTGTCCAACAGTGAGAATGGTAGAACATTGATAGACCACAGTATAGAATGCTCGAAAGACATCAAACGGAAAAGAAGATACTCTGCAGATCACACACAGGTTTGCATGCTTATTGTCAGCACCCAAGAACTATGGTTTTCTATTTTGTTTTCACAATTGATTAAATTGATTTTTCTTTTTAAAATCCCCATAGTTGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

322

Amino Acids

36.02

Weight (kDa)

9.31

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsgA_GTPase	PF03193	71 - 207	8.7e-07	RsgA GTPase
MMR_HSR1	PF01926	141 - 208	2.3e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	542
AcsI	RAATTY	2 cut(s)	435, 763
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
AgsI	TTSAA	7 cut(s)	152, 271, 358, 388, 517, 571, 733
AjnI	CCWGG	2 cut(s)	541, 610
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	66, 371, 710
AluI	AGCT	3 cut(s)	66, 371, 710
Alw26I	GTCTC	2 cut(s)	16, 153
ApeKI	GCWGC	3 cut(s)	98, 101, 497
ApoI	RAATTY	2 cut(s)	435, 763
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	247
BauI	CACGAG	2 cut(s)	108, 372
BbvI	GCAGC	3 cut(s)	85, 88, 509
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	543, 612
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	16, 153
BfaI	CTAG	3 cut(s)	12, 405, 707
BfmI	CTRYAG	2 cut(s)	525, 849
BfuI	GTATCC	1 cut(s)	137
BisI	GCNGC	3 cut(s)	99, 102, 498
BlsI	GCNGC	3 cut(s)	100, 103, 499
Bme1390I	CCNGG	2 cut(s)	543, 612
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	673
BmrFI	CCNGG	2 cut(s)	543, 612
BmrI	ACTGGG	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	609
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 478, 508
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	543, 612
BseGI	GGATG	3 cut(s)	209, 285, 583
BseLI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
BseMII	CTCAG	1 cut(s)	725
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	85, 88, 509
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	2 cut(s)	516, 634
BslI	CCNNNNNNNGG	4 cut(s)	94, 271, 446, 542
BsmAI	GTCTC	2 cut(s)	16, 153
BsmBI	CGTCTC	2 cut(s)	16, 153
BsmI	GAATGC	1 cut(s)	818
Bsp143I	GATC	2 cut(s)	139, 853
BspCNI	CTCAG	1 cut(s)	724
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	673
BspMAI	CTGCAG	1 cut(s)	853
BsrI	ACTGG	1 cut(s)	265
BssMI	GATC	2 cut(s)	139, 853
BssSI	CACGAG	2 cut(s)	108, 372
Bst2BI	CACGAG	2 cut(s)	108, 372
Bst2UI	CCWGG	2 cut(s)	543, 612
Bst4CI	ACNGT	4 cut(s)	77, 529, 776, 806
BstC8I	GCNNGC	3 cut(s)	369, 522, 872
BstDEI	CTNAG	1 cut(s)	711
BstF5I	GGATG	3 cut(s)	209, 285, 583
BstKTI	GATC	2 cut(s)	142, 856
BstMAI	GTCTC	2 cut(s)	16, 153
BstMBI	GATC	2 cut(s)	139, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 110
BstNI	CCWGG	2 cut(s)	543, 612
BstNSI	RCATGY	2 cut(s)	524, 874
BstSCI	CCNGG	2 cut(s)	541, 610
BstSFI	CTRYAG	2 cut(s)	525, 849
BstV1I	GCAGC	3 cut(s)	85, 88, 509
BsuI	GTATCC	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	209, 285, 583
BtsIMutI	CAGTG	3 cut(s)	534, 719, 781
Cac8I	GCNNGC	3 cut(s)	369, 522, 872
CciI	TCATGA	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	1 cut(s)	170
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	5 cut(s)	34, 94, 521, 635, 871
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	711
DpnI	GATC	2 cut(s)	141, 855
DpnII	GATC	2 cut(s)	139, 853
DraI	TTTAAA	1 cut(s)	946
DraIII	CACNNNGTG	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	541, 610
Esp3I	CGTCTC	2 cut(s)	16, 153
FaeI	CATG	5 cut(s)	37, 97, 524, 638, 874
FatI	CATG	5 cut(s)	33, 93, 520, 634, 870
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	99, 102, 498
FokI	GGATG	3 cut(s)	196, 292, 570
Fsp4HI	GCNGC	3 cut(s)	99, 102, 498
FspBI	CTAG	3 cut(s)	12, 405, 707
GluI	GCNGC	3 cut(s)	99, 102, 498
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	609
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	5 cut(s)	37, 97, 524, 638, 874
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HinfI	GANTC	6 cut(s)	169, 225, 256, 318, 532, 631
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	3 cut(s)	247, 536, 666
Hpy188I	TCNGA	2 cut(s)	158, 380
Hpy188III	TCNNGA	4 cut(s)	149, 626, 635, 730
Hpy8I	GTNNAC	3 cut(s)	247, 536, 666
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	4 cut(s)	77, 529, 776, 806
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	6 cut(s)	367, 416, 497, 651, 851, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 110
HpyF3I	CTNAG	1 cut(s)	711
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	5 cut(s)	37, 97, 524, 638, 874
Kzo9I	GATC	2 cut(s)	139, 853
Lsp1109I	GCAGC	3 cut(s)	85, 88, 509
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	3 cut(s)	12, 405, 707
MaeII	ACGT	1 cut(s)	124
MalI	GATC	2 cut(s)	141, 855
MboI	GATC	2 cut(s)	139, 853
MboII	GAAGA	2 cut(s)	583, 852
MfeI	CAATTG	2 cut(s)	194, 920
MlyI	GAGTC	2 cut(s)	327, 541
MmeI	TCCRAC	1 cut(s)	795
MnlI	CCTC	6 cut(s)	99, 223, 226, 480, 633, 637
MseI	TTAA	3 cut(s)	345, 927, 945
MslI	CAYNNNNRTG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	543, 612
MunI	CAATTG	2 cut(s)	194, 920
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	543, 612
MwoI	GCNNNNNNNGC	2 cut(s)	17, 110
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	2 cut(s)	139, 853
NlaIII	CATG	5 cut(s)	37, 97, 524, 638, 874
NlaIV	GGNNCC	1 cut(s)	673
NspI	RCATGY	2 cut(s)	524, 874
PaeI	GCATGC	2 cut(s)	524, 874
PagI	TCATGA	1 cut(s)	634
PctI	GAATGC	1 cut(s)	818
PfeI	GAWTC	4 cut(s)	169, 225, 256, 631
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	100, 103, 499
PleI	GAGTC	2 cut(s)	326, 540
PpsI	GAGTC	2 cut(s)	326, 540
Psp6I	CCWGG	2 cut(s)	541, 610
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	2 cut(s)	541, 610
PspN4I	GGNNCC	1 cut(s)	673
PspPI	GGNCC	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	853
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	345, 927, 945
SatI	GCNGC	3 cut(s)	99, 102, 498
Sau3AI	GATC	2 cut(s)	139, 853
Sau96I	GGNCC	1 cut(s)	247
SchI	GAGTC	2 cut(s)	327, 541
ScrFI	CCNGG	2 cut(s)	543, 612
SetI	ASST	9 cut(s)	68, 127, 246, 252, 373, 616, 648, 712, 867
SexAI	ACCWGGT	1 cut(s)	610
SfcI	CTRYAG	2 cut(s)	525, 849
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	233
SphI	GCATGC	2 cut(s)	524, 874
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	3 cut(s)	12, 405, 707
StyD4I	CCNGG	2 cut(s)	541, 610
TaaI	ACNGT	4 cut(s)	77, 529, 776, 806
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	478, 818
TfiI	GAWTC	4 cut(s)	169, 225, 256, 631
Tru1I	TTAA	3 cut(s)	345, 927, 945
Tru9I	TTAA	3 cut(s)	345, 927, 945
TscAI	CASTG	3 cut(s)	534, 719, 781
TseI	GCWGC	3 cut(s)	98, 101, 497
TspDTI	ATGAA	4 cut(s)	251, 296, 300, 623
TspGWI	ACGGA	1 cut(s)	847
TspRI	CASTG	3 cut(s)	534, 719, 781
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	2 cut(s)	435, 763
XceI	RCATGY	2 cut(s)	524, 874
XspI	CTAG	3 cut(s)	12, 405, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.