Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009138

Physical Location & Seq

Genomic Coordinates Forward (+)

27338390 .. 27342037

Gene Structure 3648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1229500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCAACGGCTACTTTGGCAAGGCAAATAGGCAGAGCTATTACAAACAGCACAAGCGCGGGAAACGGATGGTTCAACCCTCACATGGCTGCTGCTTCCCGCGCCATTGCCGAACGGATCCCATTGGTCGATCTCGTTCTCGAAGTCAGAGACTCAAGGATTCCATTTTCGTCAGAGTTTGACCTACTAAGGAACTATACACCACTCTCAAAGAGAATAATACTGTTCAACAAGATGGACCTTGCAAACCGTTCTCAACTGAAGGACTGGATGAAGTACCTTAAACAAAATAATCGTGTTTCATATGGAGTCAATGCCCATAATAACGAGAGCATTCAGCAGTTGTTGAACTTTTTGCAAGCTCAAGTAAGAAAATTGAAGAAAGCTGATCACTGTAATACCACAACAATATTGCTAGTTGGAATTCCTAATGTTGGAAAGTCAGCCCTTGCCAACTCTTTGCATCGGATTGGGAGGATTAGCGCAGCAGAGAAGGGAAAGTTGAAGTGTGCTACAGTGAGTTCACATCCTGGTGAGACAAAAAATATAAGCAGCTTGAAGATTGCAAGCCACCCCAATATTTACGTGTTGGACACCCCAGGCGTTTTGCCTCCACATATTTCGGATGATGATGTATGCACCAAGCTAGCCTTGACAGGAACGATTCGAGATTCTTTTGCTGGGGAAAAAGAACTGGCTCAGTATTTTCTGGCTATCTTGAACAGGAGTGACGAATACAAGAAATGGGCAAAGTTCTCCAACAGCGAGAATGAGGGATCACTTGCAAATAAGTATATAGAATCCTCAACTAGCTCTGAAATCGGCATGAAACGGAAAAATGAATACCCCACAGATCACACGCAGGATTTCATAGTGCATGAGGTTCGTAAGACACTCTTTGAGATGATATCATCTTTCGACGGTGATGTGGAAGACGAAAGGCTTATTAAGGAAGAAATCAAGGCTATGGGAGGAGCTTTTCACGTTCCTTTGGAATCCGAAGAAGATGCTGAAAATAAAGTCGCAGCTAAGTTGCTGAATCTTTTTCGTACCGGGAGGCTCGGACATTATATTTTAGACTGTATCCCAAGAAAACTCCAGTCCTGTGCAATTTCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022613 GO:0042254 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

374

Amino Acids

41.63

Weight (kDa)

8.91

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsgA_GTPase	PF03193	71 - 202	9.2e-07	RsgA GTPase
MMR_HSR1	PF01926	137 - 212	2.1e-10	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10650
fragaria_vesca	FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960 FvH4_7g07960
malus_domestica	MD02G1229500.v1.1 MD02G1234100.v1.1
prunus_persica	Prupe.2G108800_v2.0.a1 Prupe.2G108800_v2.0.a1
pyrus_communis	pycom02g19810
rosa_chinensis	RchiOBHm_Chr1g0341331
rosa_laevigata	RLG00000029084
rosa_multiflora	Rmu_sc0000047.1_g000015
rosa_rugosa	Rorug01G0157300.1
rosa_samantha	Rh1AG172100 Rh1BG139900 Rh1CG160200 Rh1DG172300
rosa_wichuraiana	Rw1G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	59, 102
AciI	CCGC	2 cut(s)	59, 100
AclWI	GGATC	3 cut(s)	112, 125, 784
AcsI	RAATTY	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	2 cut(s)	278, 1051
AfiI	CCNNNNNNNGG	2 cut(s)	85, 434
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	7 cut(s)	76, 229, 349, 379, 505, 559, 721
AjnI	CCWGG	2 cut(s)	529, 598
AluBI	AGCT	8 cut(s)	38, 362, 386, 555, 646, 813, 977, 1028
AluI	AGCT	8 cut(s)	38, 362, 386, 555, 646, 813, 977, 1028
Alw26I	GTCTC	2 cut(s)	144, 530
AlwI	GGATC	3 cut(s)	112, 125, 784
ApeKI	GCWGC	5 cut(s)	89, 92, 485, 552, 1025
ApoI	RAATTY	1 cut(s)	423
AspLEI	GCGC	3 cut(s)	59, 104, 485
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	1054
AsuHPI	GGTGA	2 cut(s)	545, 935
AsuNHI	GCTAGC	1 cut(s)	646
AvaII	GGWCC	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	939
BbvI	GCAGC	5 cut(s)	76, 79, 497, 564, 1037
BccI	CCATC	2 cut(s)	63, 229
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	4 cut(s)	866, 900, 989, 1023
BciT130I	CCWGG	2 cut(s)	531, 600
BciVI	GTATCC	1 cut(s)	1094
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	1054
BcoDI	GTCTC	2 cut(s)	144, 530
BfaI	CTAG	3 cut(s)	416, 647, 810
BfmI	CTRYAG	1 cut(s)	513
BfuI	GTATCC	1 cut(s)	1094
BisI	GCNGC	5 cut(s)	90, 93, 486, 553, 1026
BlsI	GCNGC	5 cut(s)	91, 94, 487, 554, 1027
Bme1390I	CCNGG	3 cut(s)	531, 600, 1054
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	3 cut(s)	531, 600, 1054
BmsI	GCATC	2 cut(s)	472, 997
BmtI	GCTAGC	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	939
BpmI	CTGGAG	1 cut(s)	1082
BpuEI	CTTGAG	2 cut(s)	139, 348
BpuMI	CCSGG	1 cut(s)	1054
BsaAI	YACGTR	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 434
Bse1I	ACTGG	3 cut(s)	272, 699, 1099
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	531, 600
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	4 cut(s)	74, 276, 526, 631
BseLI	CCNNNNNNNGG	2 cut(s)	85, 434
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	3 cut(s)	272, 699, 1099
BseRI	GAGGAG	1 cut(s)	987
BseXI	GCAGC	5 cut(s)	76, 79, 497, 564, 1037
BseYI	CCCAGC	1 cut(s)	680
Bsh1236I	CGCG	2 cut(s)	59, 102
BsiSI	CCGG	1 cut(s)	1053
BslI	CCNNNNNNNGG	2 cut(s)	85, 434
BsmAI	GTCTC	2 cut(s)	144, 530
BsmI	GAATGC	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	117, 130, 388, 776, 853
BspACI	CCGC	2 cut(s)	59, 100
BspCNI	CTCAG	1 cut(s)	712
BspFNI	CGCG	2 cut(s)	59, 102
BspLI	GGNNCC	1 cut(s)	119
BspOI	GCTAGC	1 cut(s)	650
BspPI	GGATC	3 cut(s)	112, 125, 784
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	272, 699, 1099
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	5 cut(s)	117, 130, 388, 776, 853
Bst2UI	CCWGG	2 cut(s)	531, 600
Bst4CI	ACNGT	6 cut(s)	225, 251, 395, 517, 923, 1082
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	3 cut(s)	360, 568, 648
BstDEI	CTNAG	3 cut(s)	188, 699, 1029
BstF5I	GGATG	4 cut(s)	74, 276, 526, 631
BstFNI	CGCG	2 cut(s)	59, 102
BstHHI	GCGC	3 cut(s)	59, 104, 485
BstKTI	GATC	5 cut(s)	120, 133, 391, 779, 856
BstMAI	GTCTC	2 cut(s)	144, 530
BstMBI	GATC	5 cut(s)	117, 130, 388, 776, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 101
BstNI	CCWGG	2 cut(s)	531, 600
BstSCI	CCNGG	3 cut(s)	529, 598, 1052
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	2 cut(s)	59, 102
BstV1I	GCAGC	5 cut(s)	76, 79, 497, 564, 1037
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	1094
BtsCI	GGATG	4 cut(s)	74, 276, 526, 631
BtsIMutI	CAGTG	2 cut(s)	391, 522
Cac8I	GCNNGC	3 cut(s)	360, 568, 648
CfoI	GCGC	3 cut(s)	59, 104, 485
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	277, 1050
CviAII	CATG	3 cut(s)	85, 826, 878
CviQI	GTAC	2 cut(s)	277, 1050
DdeI	CTNAG	3 cut(s)	188, 699, 1029
DpnI	GATC	5 cut(s)	119, 132, 390, 778, 855
DpnII	GATC	5 cut(s)	117, 130, 388, 776, 853
Eco32I	GATATC	1 cut(s)	909
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	423
EcoRII	CCWGG	2 cut(s)	529, 598
EcoRV	GATATC	1 cut(s)	909
FaeI	CATG	3 cut(s)	88, 829, 881
FalI	AAGNNNNNCTT	4 cut(s)	635, 667, 881, 913
FatI	CATG	3 cut(s)	84, 825, 877
FauI	CCCGC	2 cut(s)	52, 107
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	5 cut(s)	90, 93, 486, 553, 1026
FokI	GGATG	4 cut(s)	81, 283, 513, 638
Fsp4HI	GCNGC	5 cut(s)	90, 93, 486, 553, 1026
FspBI	CTAG	3 cut(s)	416, 647, 810
GlaI	GCGC	3 cut(s)	58, 103, 484
GluI	GCNGC	5 cut(s)	90, 93, 486, 553, 1026
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	1 cut(s)	1082
HapII	CCGG	1 cut(s)	1053
HhaI	GCGC	3 cut(s)	59, 104, 485
Hin1II	CATG	3 cut(s)	88, 829, 881
Hin6I	GCGC	3 cut(s)	57, 102, 483
HinP1I	GCGC	3 cut(s)	57, 102, 483
HinfI	GANTC	8 cut(s)	152, 160, 309, 664, 671, 800, 995, 1039
HpaII	CCGG	1 cut(s)	1053
HphI	GGTGA	2 cut(s)	545, 935
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	7 cut(s)	149, 175, 468, 625, 817, 1000, 1064
Hpy188III	TCNNGA	3 cut(s)	140, 668, 718
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	1 cut(s)	923
HpyAV	CCTTC	2 cut(s)	256, 487
HpyCH4III	ACNGT	6 cut(s)	225, 251, 395, 517, 923, 1082
HpyCH4IV	ACGT	2 cut(s)	585, 984
HpyCH4V	TGCA	8 cut(s)	245, 358, 463, 566, 639, 785, 877, 1109
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 101
HpyF3I	CTNAG	3 cut(s)	188, 699, 1029
HpySE526I	ACGT	2 cut(s)	585, 984
Hsp92II	CATG	3 cut(s)	88, 829, 881
HspAI	GCGC	3 cut(s)	57, 102, 483
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	117, 130, 388, 776, 853
LmnI	GCTCC	1 cut(s)	974
Lsp1109I	GCAGC	5 cut(s)	76, 79, 497, 564, 1037
LweI	GCATC	2 cut(s)	472, 997
MaeI	CTAG	3 cut(s)	416, 647, 810
MaeII	ACGT	2 cut(s)	585, 984
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	5 cut(s)	119, 132, 390, 778, 855
MboI	GATC	5 cut(s)	117, 130, 388, 776, 853
MboII	GAAGA	6 cut(s)	391, 571, 944, 965, 1013, 1016
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	3 cut(s)	374, 423, 1110
MlyI	GAGTC	2 cut(s)	146, 318
MmeI	TCCRAC	4 cut(s)	400, 415, 570, 783
MnlI	CCTC	8 cut(s)	90, 468, 621, 766, 814, 874, 965, 1050
MseI	TTAA	2 cut(s)	282, 948
MslI	CAYNNNNRTG	1 cut(s)	531
MspI	CCGG	1 cut(s)	1053
MspR9I	CCNGG	3 cut(s)	531, 600, 1054
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	2 cut(s)	531, 600
MvnI	CGCG	2 cut(s)	59, 102
MwoI	GCNNNNNNNGC	2 cut(s)	17, 101
NciI	CCSGG	1 cut(s)	1054
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	5 cut(s)	117, 130, 388, 776, 853
NheI	GCTAGC	1 cut(s)	646
NlaIII	CATG	3 cut(s)	88, 829, 881
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	728
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	6 cut(s)	160, 664, 671, 800, 995, 1039
PkrI	GCNGC	5 cut(s)	91, 94, 487, 554, 1027
PleI	GAGTC	2 cut(s)	146, 317
PpsI	GAGTC	2 cut(s)	146, 317
Ppu21I	YACGTR	1 cut(s)	586
Psp6I	CCWGG	2 cut(s)	529, 598
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	2 cut(s)	529, 598
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	117
RsaI	GTAC	2 cut(s)	278, 1051
RsaNI	GTAC	2 cut(s)	277, 1050
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	282, 948
SatI	GCNGC	5 cut(s)	90, 93, 486, 553, 1026
Sau3AI	GATC	5 cut(s)	117, 130, 388, 776, 853
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	2 cut(s)	146, 318
ScrFI	CCNGG	3 cut(s)	531, 600, 1054
SfaNI	GCATC	2 cut(s)	472, 997
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	2 cut(s)	154, 363
SmoI	CTYRAG	2 cut(s)	154, 363
Sse9I	AATT	3 cut(s)	374, 423, 1110
SsiI	CCGC	2 cut(s)	59, 100
SspI	AATATT	2 cut(s)	411, 580
SspMI	CTAG	3 cut(s)	416, 647, 810
StyD4I	CCNGG	3 cut(s)	529, 598, 1052
TaaI	ACNGT	6 cut(s)	225, 251, 395, 517, 923, 1082
TaiI	ACGT	2 cut(s)	588, 987
TaqI	TCGA	4 cut(s)	129, 141, 667, 918
TasI	AATT	3 cut(s)	374, 423, 1110
TfiI	GAWTC	6 cut(s)	160, 664, 671, 800, 995, 1039
Tru1I	TTAA	2 cut(s)	282, 948
Tru9I	TTAA	2 cut(s)	282, 948
TscAI	CASTG	2 cut(s)	398, 522
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	5 cut(s)	89, 92, 485, 552, 1025
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	5 cut(s)	287, 291, 842, 855, 859
TspGWI	ACGGA	3 cut(s)	81, 130, 847
TspRI	CASTG	2 cut(s)	398, 522
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	423
XspI	CTAG	3 cut(s)	416, 647, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.