AT4G10890

Protein of unknown function (DUF2439)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
6688833 .. 6693903
5071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10890.3

Sequence Viewer

Length: 1584 bp
ATGCTAACTAGGCGATATGGATTACAAGAGCTTGAAAATGTCTATCTTGAGGAATCTGTTGCCATGTTTCTCGAGGAGGTTGATAAGAATAGGACTGTTCGAGATATAGTTGCAAGATATCAACAGTCATTGAATGTGGTGAAAAGAAAGATTGATGATGTTTTGAGCGCTCTTTTAAAGTTTGCAGCGGATACATTAAAGTCACAAGAATCACATGATACAAAGGTTTTGAAGTATTGTGCGAGGAATGAATCTTTTTCCCCTCATCCATCTAATCGAAAGTACTATCTTGTTAACTCTGTATATCCCACGACAACTGGATATCTTGGTCCACATCGTAGGATATTATATCATCTTGGTCAATTTGGTAGAGGAGGACCACCAGTAACTGTACAAGAGTTGTTCAACCGAAAACATTTAGATTTGCGATCTGTGATTGATAGGACATTTGGAGTATGGAAAGCAAAATGGAGGATTTTGGATCACACCTGCAAAAATGTTAACATCGCCATCAACGTCACGAAAACGAACATAAATCATGCATCAGCGACAACGGTAACGGCTGCGACAACAACACCAAAACAAACAAAAATCTGCAGTAGAGTTTGTAGCCGCTGCTACCACTACAGCATGCGTCAAAAGCTACGACACTCACTACACACTCGAATTTTAAAATCAAACAGCGAAAACGCGATTCTCTTCTCCGAGGAAGAAGAAGAAATGGCGGAGAAACAGAGATGGATTGCGATGTATACGAAACACCTCAAGCAGAAGCGAAAGGTCTATCACGATGGCTTCCTTGATTTACATATCGCCAGAAAAAAGGTGATGCTTTATGATGAGGACGATAATCTACTTGAAAGCAGGACGCTTAAGGCATGTGAAGTTGTGAACACAGGTGAAACACTCACATTTCAAGCATATCTTGTGGATATATGCGATCCTAAGGACGGAAGTAAAGCTTCTTCTGAGCCAAAGGTTGAACCAAGTGATCAAAAATGTGCACGCAAACCATTTACAGTTCTCAGGCCAAATTTCAAGAAAAGTTCTCTTCGTTGTGATGAGAAAAAACCTGACCTTGTGAATAAATTTTCTTCGAAAAGTCTCAGCCCATCTCACAATATGATTAGAGTATTCAAAAAGAGAGAACTGCATAAGTATGGGGCACTGACTCCAGACTCAACAACAAAAGGTACTGTATCTCTTGGCTCAGTTGATAAAGAAAGCAATAACCACCCTTTGATCAACTCTCCATGTACTGGAAGGTCTGTTGTAGATTCAAGGTTAGAGAATTGTAAGTTAAGCAAGGATGTTCCTCCACCCAAGCCTTTACGTGATGTAAATCAGATACTCTCCATTCTTCAGAAACGGAATGCTACAGAGACATGTTCTGATAATAACATGCAAACATCTGTGCTTTTGACAAAAGTACCTCCAGAATCTGAAACCAGCAAAAGACACAAAATGGAGTCTATTTCAACGAAAGAAGCATCTACGGAACAAGTAATGGTGCAAGAAACCTCATCGGCCAGCACAAGAGGTTGCTTAATGAGTGATCCTCCGAGTTTCGACCTCGGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

60.02

Weight (kDa)

9.39

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 2 - 59 2.5e-08 Domain of unknown function (DUF8040)
DDE_Tnp_4 PF13359 71 - 164 1.4e-06 DDE superfamily endonuclease
ZGRF1-like_N PF10382 246 - 316 1.7e-16 DNA helicase ZGRF1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 497
AccB7I CCANNNNNTGG 1 cut(s) 1259
AccI GTMKAC 1 cut(s) 752
AccII CGCG 1 cut(s) 692
AciI CCGC 3 cut(s) 188, 613, 725
AclWI GGATC 3 cut(s) 489, 935, 1550
AcoI YGGCCR 1 cut(s) 1527
AcsI RAATTY 4 cut(s) 666, 1033, 1088, 1578
AcuI CTGAAG 1 cut(s) 1346
AfaI GTAC 5 cut(s) 284, 393, 1195, 1258, 1431
AfeI AGCGCT 1 cut(s) 169
AfiI CCNNNNNNNGG 2 cut(s) 950, 1259
AflII CTTAAG 1 cut(s) 872
AflIII ACRYGT 1 cut(s) 1385
AluBI AGCT 3 cut(s) 31, 643, 962
AluI AGCT 3 cut(s) 31, 643, 962
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 2 cut(s) 1109, 1376
Alw44I GTGCAC 1 cut(s) 1002
AlwI GGATC 3 cut(s) 489, 935, 1550
AlwNI CAGNNNCTG 2 cut(s) 389, 1442
Ama87I CYCGRG 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 169
AoxI GGCC 2 cut(s) 1028, 1527
ApaLI GTGCAC 1 cut(s) 1002
ApeKI GCWGC 3 cut(s) 185, 563, 615
ApoI RAATTY 4 cut(s) 666, 1033, 1088, 1578
AspLEI GCGC 1 cut(s) 170
AspS9I GGNCC 2 cut(s) 329, 377
AsuHPI GGTGA 3 cut(s) 151, 838, 911
AsuII TTCGAA 1 cut(s) 1097
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 2 cut(s) 329, 377
AxyI CCTNAGG 1 cut(s) 945
BaeGI GKGCMC 2 cut(s) 1006, 1168
BaeI ACNNNNGTAYC 4 cut(s) 210, 243, 1413, 1446
BarI GAAGNNNNNNTAC 2 cut(s) 949, 981
Bbv12I GWGCWC 1 cut(s) 1006
BbvI GCAGC 3 cut(s) 197, 550, 602
BccI CCATC 5 cut(s) 277, 518, 732, 785, 1120
BceAI ACGGC 1 cut(s) 576
BciVI GTATCC 1 cut(s) 184
BclI TGATCA 2 cut(s) 991, 1242
BcoDI GTCTC 2 cut(s) 1109, 1376
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 3 cut(s) 595, 625, 1377
BfoI RGCGCY 1 cut(s) 171
BfrI CTTAAG 1 cut(s) 872
BfuAI ACCTGC 1 cut(s) 497
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 4 cut(s) 186, 564, 613, 616
BlsI GCNGC 4 cut(s) 187, 565, 614, 617
BmcAI AGTACT 1 cut(s) 284
Bme18I GGWCC 2 cut(s) 329, 377
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 329, 377
BmsI GCATC 3 cut(s) 551, 819, 1499
BplI GAGNNNNNCTC 2 cut(s) 1543, 1575
BpmI CTGGAG 2 cut(s) 1158, 1419
Bpu14I TTCGAA 1 cut(s) 1097
BpuEI CTTGAG 2 cut(s) 68, 749
BsaAI YACGTR 1 cut(s) 1334
BsaBI GATNNNNATC 1 cut(s) 1341
BsaJI CCNNGG 2 cut(s) 705, 1573
Bsc4I CCNNNNNNNGG 2 cut(s) 950, 1259
Bse1I ACTGG 3 cut(s) 322, 383, 1264
Bse21I CCTNAGG 1 cut(s) 945
Bse8I GATNNNNATC 1 cut(s) 1341
BseDI CCNNGG 2 cut(s) 705, 1573
BseGI GGATG 2 cut(s) 265, 1315
BseJI GATNNNNATC 1 cut(s) 1341
BseLI CCNNNNNNNGG 2 cut(s) 950, 1259
BseMII CTCAG 4 cut(s) 960, 1039, 1120, 1224
BseNI ACTGG 3 cut(s) 322, 383, 1264
BseRI GAGGAG 2 cut(s) 89, 387
BseSI GKGCMC 2 cut(s) 1006, 1168
BseXI GCAGC 3 cut(s) 197, 550, 602
Bsh1236I CGCG 1 cut(s) 692
BshFI GGCC 2 cut(s) 1030, 1529
BsiHKAI GWGCWC 1 cut(s) 1006
BsiHKCI CYCGRG 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 950, 1259
BsmAI GTCTC 2 cut(s) 1109, 1376
BsmI GAATGC 1 cut(s) 1378
BsnI GGCC 2 cut(s) 1030, 1529
BsoBI CYCGRG 1 cut(s) 71
Bsp119I TTCGAA 1 cut(s) 1097
Bsp1286I GDGCHC 2 cut(s) 1006, 1168
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 6 cut(s) 428, 481, 940, 991, 1242, 1555
BspACI CCGC 3 cut(s) 188, 613, 725
BspANI GGCC 2 cut(s) 1030, 1529
BspCNI CTCAG 4 cut(s) 961, 1038, 1119, 1223
BspFNI CGCG 1 cut(s) 692
BspMAI CTGCAG 1 cut(s) 599
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 3 cut(s) 489, 935, 1550
BspT104I TTCGAA 1 cut(s) 1097
BspTI CTTAAG 1 cut(s) 872
BsrGI TGTACA 1 cut(s) 391
BsrI ACTGG 3 cut(s) 322, 383, 1264
BssECI CCNNGG 2 cut(s) 705, 1573
BssMI GATC 6 cut(s) 428, 481, 940, 991, 1242, 1555
BssNAI GTATAC 1 cut(s) 753
Bst1107I GTATAC 1 cut(s) 753
Bst4CI ACNGT 6 cut(s) 97, 126, 391, 556, 1021, 1198
Bst6I CTCTTC 2 cut(s) 704, 1056
BstAFI CTTAAG 1 cut(s) 872
BstAUI TGTACA 1 cut(s) 391
BstBAI YACGTR 1 cut(s) 1334
BstBI TTCGAA 1 cut(s) 1097
BstC8I GCNNGC 3 cut(s) 632, 1006, 1531
BstDEI CTNAG 5 cut(s) 945, 969, 1025, 1106, 1210
BstF5I GGATG 2 cut(s) 265, 1315
BstFNI CGCG 1 cut(s) 692
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstKTI GATC 6 cut(s) 431, 484, 943, 994, 1245, 1558
BstMAI GTCTC 2 cut(s) 1109, 1376
BstMBI GATC 6 cut(s) 428, 481, 940, 991, 1242, 1555
BstMWI GCNNNNNNNGC 2 cut(s) 10, 640
BstNSI RCATGY 4 cut(s) 634, 882, 1389, 1405
BstSFI CTRYAG 3 cut(s) 595, 625, 1377
BstSLI GKGCMC 2 cut(s) 1006, 1168
BstUI CGCG 1 cut(s) 692
BstV1I GCAGC 3 cut(s) 197, 550, 602
BstZ17I GTATAC 1 cut(s) 753
Bsu36I CCTNAGG 1 cut(s) 945
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 1030, 1529
BtgZI GCGATG 2 cut(s) 490, 761
BtsCI GGATG 2 cut(s) 265, 1315
BtsIMutI CAGTG 1 cut(s) 1166
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 3 cut(s) 632, 1006, 1531
CaiI CAGNNNCTG 2 cut(s) 389, 1442
CfoI GCGC 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 329, 377
CseI GACGC 2 cut(s) 623, 877
Csp6I GTAC 5 cut(s) 283, 392, 1194, 1257, 1430
CviAII CATG 8 cut(s) 64, 215, 539, 631, 879, 1254, 1386, 1402
CviQI GTAC 5 cut(s) 283, 392, 1194, 1257, 1430
DdeI CTNAG 5 cut(s) 945, 969, 1025, 1106, 1210
DpnI GATC 6 cut(s) 430, 483, 942, 993, 1244, 1557
DpnII GATC 6 cut(s) 428, 481, 940, 991, 1242, 1555
DraI TTTAAA 2 cut(s) 177, 672
EaeI YGGCCR 1 cut(s) 1527
Eam1104I CTCTTC 2 cut(s) 704, 1056
EarI CTCTTC 2 cut(s) 704, 1056
EciI GGCGGA 1 cut(s) 740
Eco32I GATATC 2 cut(s) 119, 323
Eco47I GGWCC 2 cut(s) 329, 377
Eco47III AGCGCT 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 1346
Eco81I CCTNAGG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 71
EcoRV GATATC 2 cut(s) 119, 323
EcoT22I ATGCAT 1 cut(s) 544
FaeI CATG 8 cut(s) 67, 218, 542, 634, 882, 1257, 1389, 1405
FalI AAGNNNNNCTT 4 cut(s) 909, 941, 946, 978
FatI CATG 8 cut(s) 63, 214, 538, 630, 878, 1253, 1385, 1401
FbaI TGATCA 2 cut(s) 991, 1242
FblI GTMKAC 1 cut(s) 752
Fnu4HI GCNGC 4 cut(s) 186, 564, 613, 616
FokI GGATG 2 cut(s) 252, 1322
Fsp4HI GCNGC 4 cut(s) 186, 564, 613, 616
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 169
GluI GCNGC 4 cut(s) 186, 564, 613, 616
GsuI CTGGAG 2 cut(s) 1158, 1419
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 2 cut(s) 1030, 1529
HgaI GACGC 2 cut(s) 623, 877
HhaI GCGC 1 cut(s) 170
Hin1II CATG 8 cut(s) 67, 218, 542, 634, 882, 1257, 1389, 1405
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 2 cut(s) 295, 502
HindII GTYRAC 2 cut(s) 295, 502
HindIII AAGCTT 1 cut(s) 960
HinfI GANTC 9 cut(s) 53, 209, 251, 694, 1171, 1178, 1277, 1439, 1469
HpaI GTTAAC 2 cut(s) 295, 502
HphI GGTGA 3 cut(s) 151, 838, 911
Hpy166II GTNNAC 6 cut(s) 295, 332, 502, 753, 892, 1004
Hpy188I TCNGA 8 cut(s) 706, 970, 1347, 1365, 1393, 1444, 1563, 1577
Hpy188III TCNNGA 8 cut(s) 47, 71, 101, 520, 788, 1039, 1175, 1436
Hpy8I GTNNAC 6 cut(s) 295, 332, 502, 753, 892, 1004
HpyAV CCTTC 1 cut(s) 1257
HpyCH4III ACNGT 6 cut(s) 97, 126, 391, 556, 1021, 1198
HpyCH4IV ACGT 2 cut(s) 516, 1333
HpyCH4V TGCA 9 cut(s) 113, 185, 492, 542, 597, 1004, 1153, 1405, 1513
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 640
HpyF3I CTNAG 5 cut(s) 945, 969, 1025, 1106, 1210
HpySE526I ACGT 2 cut(s) 516, 1333
Hsp92II CATG 8 cut(s) 67, 218, 542, 634, 882, 1257, 1389, 1405
HspAI GCGC 1 cut(s) 168
Ksp22I TGATCA 2 cut(s) 991, 1242
KspAI GTTAAC 2 cut(s) 295, 502
Kzo9I GATC 6 cut(s) 428, 481, 940, 991, 1242, 1555
Lsp1109I GCAGC 3 cut(s) 197, 550, 602
LweI GCATC 3 cut(s) 551, 819, 1499
MaeI CTAG 1 cut(s) 9
MaeII ACGT 2 cut(s) 516, 1333
MaeIII GTNAC 4 cut(s) 201, 385, 517, 556
MalI GATC 6 cut(s) 430, 483, 942, 993, 1244, 1557
MboI GATC 6 cut(s) 428, 481, 940, 991, 1242, 1555
MboII GAAGA 8 cut(s) 691, 722, 725, 728, 957, 1043, 1086, 1352
MhlI GDGCHC 2 cut(s) 1006, 1168
MluCI AATT 6 cut(s) 362, 666, 1033, 1088, 1291, 1578
MlyI GAGTC 3 cut(s) 1165, 1172, 1478
Mph1103I ATGCAT 1 cut(s) 544
MseI TTAA 9 cut(s) 176, 197, 294, 501, 671, 873, 1301, 1547, 1582
MslI CAYNNNNRTG 1 cut(s) 1158
MspA1I CMGCKG 2 cut(s) 188, 615
MspCI CTTAAG 1 cut(s) 872
Mva1269I GAATGC 1 cut(s) 1378
MvnI CGCG 1 cut(s) 692
MwoI GCNNNNNNNGC 2 cut(s) 10, 640
NdeII GATC 6 cut(s) 428, 481, 940, 991, 1242, 1555
NlaIII CATG 8 cut(s) 67, 218, 542, 634, 882, 1257, 1389, 1405
NmuCI GTSAC 2 cut(s) 201, 517
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 4 cut(s) 634, 882, 1389, 1405
NspV TTCGAA 1 cut(s) 1097
PaeI GCATGC 1 cut(s) 634
PaeR7I CTCGAG 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 497
PciI ACATGT 1 cut(s) 1385
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PctI GAATGC 1 cut(s) 1378
PfeI GAWTC 6 cut(s) 53, 209, 251, 694, 1277, 1439
PflMI CCANNNNNTGG 1 cut(s) 1259
PkrI GCNGC 4 cut(s) 187, 565, 614, 617
PleI GAGTC 3 cut(s) 1165, 1172, 1477
PpsI GAGTC 3 cut(s) 1165, 1172, 1477
Ppu21I YACGTR 1 cut(s) 1334
PscI ACATGT 1 cut(s) 1385
PspPI GGNCC 2 cut(s) 329, 377
PstI CTGCAG 1 cut(s) 599
PstNI CAGNNNCTG 2 cut(s) 389, 1442
RsaI GTAC 5 cut(s) 284, 393, 1195, 1258, 1431
RsaNI GTAC 5 cut(s) 283, 392, 1194, 1257, 1430
RseI CAYNNNNRTG 1 cut(s) 1158
SaqAI TTAA 9 cut(s) 176, 197, 294, 501, 671, 873, 1301, 1547, 1582
SatI GCNGC 4 cut(s) 186, 564, 613, 616
Sau3AI GATC 6 cut(s) 428, 481, 940, 991, 1242, 1555
Sau96I GGNCC 2 cut(s) 329, 377
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 3 cut(s) 1165, 1172, 1478
SduI GDGCHC 2 cut(s) 1006, 1168
SfaNI GCATC 3 cut(s) 551, 819, 1499
SfcI CTRYAG 3 cut(s) 595, 625, 1377
Sfr274I CTCGAG 1 cut(s) 71
SfuI TTCGAA 1 cut(s) 1097
SinI GGWCC 2 cut(s) 329, 377
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 1158
SmlI CTYRAG 4 cut(s) 47, 71, 764, 872
SmoI CTYRAG 4 cut(s) 47, 71, 764, 872
SphI GCATGC 1 cut(s) 634
Sse9I AATT 6 cut(s) 362, 666, 1033, 1088, 1291, 1578
SsiI CCGC 3 cut(s) 188, 613, 725
SspMI CTAG 1 cut(s) 9
TaaI ACNGT 6 cut(s) 97, 126, 391, 556, 1021, 1198
TaiI ACGT 2 cut(s) 519, 1336
TaqI TCGA 6 cut(s) 72, 100, 277, 664, 1097, 1569
TasI AATT 6 cut(s) 362, 666, 1033, 1088, 1291, 1578
TatI WGTACW 3 cut(s) 282, 391, 1256
TauI GCSGC 1 cut(s) 615
TfiI GAWTC 6 cut(s) 53, 209, 251, 694, 1277, 1439
Tru1I TTAA 9 cut(s) 176, 197, 294, 501, 671, 873, 1301, 1547, 1582
Tru9I TTAA 9 cut(s) 176, 197, 294, 501, 671, 873, 1301, 1547, 1582
TscAI CASTG 1 cut(s) 1173
TseFI GTSAC 2 cut(s) 201, 517
TseI GCWGC 3 cut(s) 185, 563, 615
Tsp45I GTSAC 2 cut(s) 201, 517
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 3 cut(s) 966, 1384, 1511
TspRI CASTG 1 cut(s) 1173
Van91I CCANNNNNTGG 1 cut(s) 1259
Vha464I CTTAAG 1 cut(s) 872
VneI GTGCAC 1 cut(s) 1002
VpaK11BI GGWCC 2 cut(s) 329, 377
XapI RAATTY 4 cut(s) 666, 1033, 1088, 1578
XceI RCATGY 4 cut(s) 634, 882, 1389, 1405
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 752
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.