RchiOBHm_Chr5g0008231
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012706
Physical Location & Seq
Reverse (-)
5258113 .. 5259597
1485 bp
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UTR
Exon/CDS
Intron
PRQ28921

Sequence Viewer

Length: 306 bp
ATGAATCAGAATGGTGTATCAAAAGGAAGTTCTAGCTCAATTGAAAACACTTATGAAAGTCGCATTATACAAAGCCTTGACAAAATCTCCACCAGTTTTGAACGACTCTATAATCTACTAGAGAAAAGAGAAAGGGAGAGACAATATACAGTTTGGGATGCTATCAAGGAGATCCCAAACTTGGATCAAGGTACTCGTTTCACGGCGCTTGATATGATTGATACCAAAACAAAAAAAGATGCGTTCTTGAAGATGTCCCCTGAAGAACGATTAAATTGGATATTCTACAAGATGCAAGGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

101

Amino Acids

11.9

Weight (kDa)

7.93

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 51 - 97 1.4e-26 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 166, 192
AcuI CTGAAG 1 cut(s) 282
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 3 cut(s) 44, 101, 250
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 2 cut(s) 166, 192
AspLEI GCGC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 2 cut(s) 33, 119
BfoI RGCGCY 1 cut(s) 209
BmsI GCATC 3 cut(s) 148, 229, 282
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 171, 184
BspPI GGATC 2 cut(s) 166, 192
BsrI ACTGG 1 cut(s) 93
BssMI GATC 2 cut(s) 171, 184
Bst4CI ACNGT 1 cut(s) 151
BstF5I GGATG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 2 cut(s) 174, 187
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 171, 184
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BtsCI GGATG 1 cut(s) 163
CfoI GCGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 192
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviJI RGCY 2 cut(s) 36, 75
CviKI_1 RGCY 2 cut(s) 36, 75
CviQI GTAC 1 cut(s) 192
DpnI GATC 2 cut(s) 173, 186
DpnII GATC 2 cut(s) 171, 184
Eco57I CTGAAG 1 cut(s) 282
FaiI YATR 6 cut(s) 54, 68, 111, 147, 215, 304
FaqI GGGAC 1 cut(s) 241
FokI GGATG 1 cut(s) 170
FspBI CTAG 2 cut(s) 33, 119
GlaI GCGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 209
HhaI GCGC 1 cut(s) 208
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 2 cut(s) 4, 105
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 295
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 171, 184
LpnPI CCDG 2 cut(s) 106, 273
LweI GCATC 3 cut(s) 148, 229, 282
MaeI CTAG 2 cut(s) 33, 119
MalI GATC 2 cut(s) 173, 186
MboI GATC 2 cut(s) 171, 184
MboII GAAGA 2 cut(s) 262, 275
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 171
MluCI AATT 2 cut(s) 39, 274
MlyI GAGTC 1 cut(s) 99
MseI TTAA 1 cut(s) 272
MunI CAATTG 1 cut(s) 39
NdeII GATC 2 cut(s) 171, 184
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 272
Sau3AI GATC 2 cut(s) 171, 184
SchI GAGTC 1 cut(s) 99
SetI ASST 2 cut(s) 38, 193
SfaNI GCATC 3 cut(s) 148, 229, 282
Sse9I AATT 2 cut(s) 39, 274
SspMI CTAG 2 cut(s) 33, 119
TaaI ACNGT 1 cut(s) 151
TasI AATT 2 cut(s) 39, 274
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 17, 69
XspI CTAG 2 cut(s) 33, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.