Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012706

Physical Location & Seq

Genomic Coordinates Reverse (-)

239757 .. 240143

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG002000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAATTTCATGGACGAGGATGCTTCTTCGGGCTCTGGTGATGATGCACACTTGCTAGATGGAAACAAGCATCAGTCTGGGATACCATCAAATTCAGGGCGTAGGAAGAGAAGTCGCAAGGCTACAGGTGATGCTATAGTGGATGCTATGCTAGAAATAGCTGCCGCTTCAAAAATGAGGGCGACTGCAATCATGAAGAACGAGGACCGGTTTTCTATAAGCAAATGCATAAAGGTATTAGATGAGATGCTAGGCATCGATCAGCAGGTGTACTTTCTTGCATTGGATCTATTTGAGAATGCTAATGCGAGAGAAACATTCATCTCTCTTAAAAGTGAGAAGCGATTACTGTGGTTGCAGCGCAAGTTTAGTGCTTCCTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.25

Weight (kDa)

7.87

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10890 AT4G10890 AT4G10890
fragaria_vesca	FvH4_6g48771
rosa_chinensis	RchiOBHm_Chr1g0313081 RchiOBHm_Chr5g0008231
rosa_laevigata	RLG00000030825 RLG00000031551
rosa_multiflora	Rmu_sc0001387.1_g000001 Rmu_sc0001626.1_g000023
rosa_roxburghii	Rroxscaffold_1G00068240 Rroxscaffold_4G00320700 Rroxscaffold_5G00335140
rosa_rugosa	Rorug04G0434600 RorugPtG0000200
rosa_samantha	Rh1CG002000 Rh1CG005000
rosa_wichuraiana	Rw5G005810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	2 cut(s)	4, 91
AfaI	GTAC	1 cut(s)	272
AgeI	ACCGGT	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	171
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
AlwI	GGATC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	161, 358
ApoI	RAATTY	2 cut(s)	4, 91
AsiGI	ACCGGT	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	50, 140
AvaII	GGWCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	148, 370
BccI	CCATC	2 cut(s)	53, 94
BciVI	GTATCC	1 cut(s)	75
BfaI	CTAG	3 cut(s)	56, 152, 251
BfmI	CTRYAG	2 cut(s)	123, 135
BfuAI	ACCTGC	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	3 cut(s)	162, 165, 359
BlsI	GCNGC	3 cut(s)	163, 166, 360
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmsI	GCATC	7 cut(s)	10, 34, 79, 121, 133, 237, 264
Bsa29I	ATCGAT	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	258
BseGI	GGATG	2 cut(s)	25, 148
BseXI	GCAGC	2 cut(s)	148, 370
BshTI	ACCGGT	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	208
BsmI	GAATGC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	259, 286
BspACI	CCGC	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	207
BssMI	GATC	2 cut(s)	259, 286
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	25, 148
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	2 cut(s)	262, 289
BstMBI	GATC	2 cut(s)	259, 286
BstSFI	CTRYAG	2 cut(s)	123, 135
BstV1I	GCAGC	2 cut(s)	148, 370
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	75
BsuTUI	ATCGAT	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	25, 148
BveI	ACCTGC	1 cut(s)	256
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	1 cut(s)	363
Cfr10I	RCCGGY	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	271
CspAI	ACCGGT	1 cut(s)	207
CviAII	CATG	2 cut(s)	10, 193
CviJI	RGCY	3 cut(s)	33, 122, 161
CviKI_1	RGCY	3 cut(s)	33, 122, 161
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	2 cut(s)	261, 288
DpnII	GATC	2 cut(s)	259, 286
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	2 cut(s)	13, 196
FaiI	YATR	6 cut(s)	11, 137, 149, 194, 218, 230
FatI	CATG	2 cut(s)	9, 192
Fnu4HI	GCNGC	3 cut(s)	162, 165, 359
FokI	GGATG	2 cut(s)	32, 155
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	162, 165, 359
FspBI	CTAG	3 cut(s)	56, 152, 251
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	3 cut(s)	162, 165, 359
HapII	CCGG	1 cut(s)	208
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	13, 196
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	2 cut(s)	50, 140
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	5 cut(s)	47, 188, 228, 281, 358
Hsp92II	CATG	2 cut(s)	13, 196
HspAI	GCGC	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	259, 286
LpnPI	CCDG	6 cut(s)	21, 63, 81, 111, 221, 251
Lsp1109I	GCAGC	2 cut(s)	148, 370
LweI	GCATC	7 cut(s)	10, 34, 79, 121, 133, 237, 264
MaeI	CTAG	3 cut(s)	56, 152, 251
MalI	GATC	2 cut(s)	261, 288
MboI	GATC	2 cut(s)	259, 286
MboII	GAAGA	3 cut(s)	18, 118, 208
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	4, 91, 382
MnlI	CCTC	3 cut(s)	10, 171, 196
Mph1103I	ATGCAT	1 cut(s)	230
MseI	TTAA	1 cut(s)	330
MspI	CCGG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	304
NdeII	GATC	2 cut(s)	259, 286
NlaIII	CATG	2 cut(s)	13, 196
NsiI	ATGCAT	1 cut(s)	230
PagI	TCATGA	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	256
PctI	GAATGC	1 cut(s)	304
PinAI	ACCGGT	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	163, 166, 360
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	3 cut(s)	162, 165, 359
Sau3AI	GATC	2 cut(s)	259, 286
Sau96I	GGNCC	1 cut(s)	205
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	4 cut(s)	130, 163, 237, 270
SfaNI	GCATC	7 cut(s)	10, 34, 79, 121, 133, 237, 264
SfcI	CTRYAG	2 cut(s)	123, 135
SinI	GGWCC	1 cut(s)	205
Sse9I	AATT	3 cut(s)	4, 91, 382
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	3 cut(s)	56, 152, 251
TaaI	ACNGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	258
TasI	AATT	3 cut(s)	4, 91, 382
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	2 cut(s)	161, 358
TspDTI	ATGAA	3 cut(s)	17, 209, 310
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	2 cut(s)	4, 91
XspI	CTAG	3 cut(s)	56, 152, 251
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.