DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G10890 AT4G10890 AT4G10890 |
| fragaria_vesca | FvH4_6g48771 |
| rosa_chinensis | RchiOBHm_Chr1g0313081 RchiOBHm_Chr5g0008231 |
| rosa_laevigata | RLG00000030825 RLG00000031551 |
| rosa_multiflora | Rmu_sc0001387.1_g000001 Rmu_sc0001626.1_g000023 |
| rosa_roxburghii | Rroxscaffold_1G00068240 Rroxscaffold_4G00320700 Rroxscaffold_5G00335140 |
| rosa_rugosa | Rorug04G0434600 RorugPtG0000200 |
| rosa_samantha | Rh1CG002000 Rh1CG005000 |
| rosa_wichuraiana | Rw5G005810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 8 |
| AciI | CCGC | 1 cut(s) | 12 |
| AfaI | GTAC | 3 cut(s) | 67, 302, 330 |
| AhlI | ACTAGT | 1 cut(s) | 104 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 22, 54 |
| AseI | ATTAAT | 1 cut(s) | 33 |
| AspS9I | GGNCC | 1 cut(s) | 231 |
| AsuC2I | CCSGG | 1 cut(s) | 262 |
| AsuHPI | GGTGA | 2 cut(s) | 262, 329 |
| AvaII | GGWCC | 1 cut(s) | 231 |
| BanI | GGYRCC | 1 cut(s) | 8 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 312 |
| BcnI | CCSGG | 1 cut(s) | 262 |
| BcuI | ACTAGT | 1 cut(s) | 104 |
| BfaI | CTAG | 2 cut(s) | 60, 105 |
| BisI | GCNGC | 1 cut(s) | 12 |
| BlsI | GCNGC | 1 cut(s) | 13 |
| Bme1390I | CCNGG | 1 cut(s) | 262 |
| Bme18I | GGWCC | 1 cut(s) | 231 |
| BmgT120I | GGNCC | 1 cut(s) | 231 |
| BmiI | GGNNCC | 2 cut(s) | 10, 233 |
| BmrFI | CCNGG | 1 cut(s) | 262 |
| BpuMI | CCSGG | 1 cut(s) | 262 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 256, 286 |
| Bse3DI | GCAATG | 1 cut(s) | 297 |
| BseMI | GCAATG | 1 cut(s) | 297 |
| BseMII | CTCAG | 1 cut(s) | 270 |
| BseRI | GAGGAG | 4 cut(s) | 164, 167, 176, 327 |
| BshNI | GGYRCC | 1 cut(s) | 8 |
| BsiSI | CCGG | 1 cut(s) | 262 |
| BslFI | GGGAC | 2 cut(s) | 7, 217 |
| BsmFI | GGGAC | 2 cut(s) | 7, 217 |
| Bsp1407I | TGTACA | 2 cut(s) | 300, 328 |
| BspACI | CCGC | 1 cut(s) | 12 |
| BspCNI | CTCAG | 1 cut(s) | 271 |
| BspHI | TCATGA | 1 cut(s) | 211 |
| BspLI | GGNNCC | 2 cut(s) | 10, 233 |
| BspT107I | GGYRCC | 1 cut(s) | 8 |
| BsrDI | GCAATG | 1 cut(s) | 297 |
| BsrGI | TGTACA | 2 cut(s) | 300, 328 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstAUI | TGTACA | 2 cut(s) | 300, 328 |
| BstDEI | CTNAG | 1 cut(s) | 279 |
| BstSCI | CCNGG | 1 cut(s) | 260 |
| CciI | TCATGA | 1 cut(s) | 211 |
| Cfr13I | GGNCC | 1 cut(s) | 231 |
| Csp6I | GTAC | 3 cut(s) | 66, 301, 329 |
| CviAII | CATG | 1 cut(s) | 212 |
| CviJI | RGCY | 2 cut(s) | 59, 278 |
| CviKI_1 | RGCY | 2 cut(s) | 59, 278 |
| CviQI | GTAC | 3 cut(s) | 66, 301, 329 |
| DdeI | CTNAG | 1 cut(s) | 279 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| Eco47I | GGWCC | 1 cut(s) | 231 |
| EcoO109I | RGGNCCY | 1 cut(s) | 231 |
| FaeI | CATG | 1 cut(s) | 215 |
| FaiI | YATR | 8 cut(s) | 131, 137, 197, 213, 221, 227, 246, 248 |
| FaqI | GGGAC | 2 cut(s) | 7, 217 |
| FatI | CATG | 1 cut(s) | 211 |
| Fnu4HI | GCNGC | 1 cut(s) | 12 |
| Fsp4HI | GCNGC | 1 cut(s) | 12 |
| FspBI | CTAG | 2 cut(s) | 60, 105 |
| GluI | GCNGC | 1 cut(s) | 12 |
| HapII | CCGG | 1 cut(s) | 262 |
| Hin1II | CATG | 1 cut(s) | 215 |
| HpaII | CCGG | 1 cut(s) | 262 |
| HphI | GGTGA | 2 cut(s) | 262, 329 |
| Hpy166II | GTNNAC | 4 cut(s) | 95, 253, 303, 329 |
| Hpy188III | TCNNGA | 1 cut(s) | 212 |
| Hpy8I | GTNNAC | 4 cut(s) | 95, 253, 303, 329 |
| HpyAV | CCTTC | 2 cut(s) | 83, 118 |
| HpyCH4IV | ACGT | 1 cut(s) | 74 |
| HpyCH4V | TGCA | 2 cut(s) | 80, 183 |
| HpyF3I | CTNAG | 1 cut(s) | 279 |
| HpySE526I | ACGT | 1 cut(s) | 74 |
| Hsp92II | CATG | 1 cut(s) | 215 |
| LpnPI | CCDG | 1 cut(s) | 275 |
| MaeI | CTAG | 2 cut(s) | 60, 105 |
| MaeII | ACGT | 1 cut(s) | 74 |
| MboII | GAAGA | 1 cut(s) | 170 |
| MluCI | AATT | 3 cut(s) | 17, 30, 174 |
| MnlI | CCTC | 8 cut(s) | 40, 49, 142, 145, 148, 154, 305, 308 |
| MseI | TTAA | 2 cut(s) | 33, 237 |
| MspI | CCGG | 1 cut(s) | 262 |
| MspR9I | CCNGG | 1 cut(s) | 262 |
| NciI | CCSGG | 1 cut(s) | 262 |
| NlaIII | CATG | 1 cut(s) | 215 |
| NlaIV | GGNNCC | 2 cut(s) | 10, 233 |
| PagI | TCATGA | 1 cut(s) | 211 |
| PfoI | TCCNGGA | 1 cut(s) | 260 |
| PkrI | GCNGC | 1 cut(s) | 13 |
| PpuMI | RGGWCCY | 1 cut(s) | 231 |
| PshBI | ATTAAT | 1 cut(s) | 33 |
| Psp5II | RGGWCCY | 1 cut(s) | 231 |
| PspN4I | GGNNCC | 2 cut(s) | 10, 233 |
| PspPI | GGNCC | 1 cut(s) | 231 |
| PspPPI | RGGWCCY | 1 cut(s) | 231 |
| RsaI | GTAC | 3 cut(s) | 67, 302, 330 |
| RsaNI | GTAC | 3 cut(s) | 66, 301, 329 |
| SaqAI | TTAA | 2 cut(s) | 33, 237 |
| SatI | GCNGC | 1 cut(s) | 12 |
| Sau96I | GGNCC | 1 cut(s) | 231 |
| ScrFI | CCNGG | 1 cut(s) | 262 |
| SetI | ASST | 7 cut(s) | 10, 51, 77, 94, 129, 233, 319 |
| SgeI | CNNG | 6 cut(s) | 53, 72, 117, 224, 273, 274 |
| SinI | GGWCC | 1 cut(s) | 231 |
| SpeI | ACTAGT | 1 cut(s) | 104 |
| Sse9I | AATT | 3 cut(s) | 17, 30, 174 |
| SsiI | CCGC | 1 cut(s) | 12 |
| SspMI | CTAG | 2 cut(s) | 60, 105 |
| StyD4I | CCNGG | 1 cut(s) | 260 |
| TaiI | ACGT | 1 cut(s) | 77 |
| TasI | AATT | 3 cut(s) | 17, 30, 174 |
| TatI | WGTACW | 2 cut(s) | 300, 328 |
| TauI | GCSGC | 1 cut(s) | 14 |
| Tru1I | TTAA | 2 cut(s) | 33, 237 |
| Tru9I | TTAA | 2 cut(s) | 33, 237 |
| TspDTI | ATGAA | 3 cut(s) | 137, 214, 228 |
| VpaK11BI | GGWCC | 1 cut(s) | 231 |
| VspI | ATTAAT | 1 cut(s) | 33 |
| XspI | CTAG | 2 cut(s) | 60, 105 |